BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496675
Length=1792
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64630.2 | Symbols: FAS2, NFB01, NFB1, MUB3.9 | Transducin/W... 2693 0.0
> AT5G64630.2 | Symbols: FAS2, NFB01, NFB1, MUB3.9 | Transducin/WD40
repeat-like superfamily protein | chr5:25833174-25836384
FORWARD LENGTH=1814
Length=1814
Score = 2693 bits (1458), Expect = 0.0
Identities = 1695/1805 (94%), Gaps = 33/1805 (2%)
Strand=Plus/Plus
Query 1 TTTTAGTTCTTCTTCTTCCCACTAATCCCACAAACCCTAG-AAATTTTCTCGAGAAAATC 59
|||||||| |||||||||||| |||| ||||||||||||| |||||||||| ||||||||
Sbjct 28 TTTTAGTTATTCTTCTTCCCAGTAAT-CCACAAACCCTAGAAAATTTTCTCAAGAAAATC 86
Query 60 CGAATCACGATTCTGGGCATTGTGGAGGATTGACAAAAATGAAGGGAGGTACGATACAGA 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 87 CGAATCACGATTCTGGGCATTGTGGAGGATTGACAAAAATGAAGGGAGGTACGATACAGA 146
Query 120 TAAGTTGGCACGATGGGAAACCGGTGCTAACCCTAGATTTTCACCCGATTTCCGGTTTAC 179
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 147 TAAGTTGGCACGATGGGAAGCCGGTGCTAACCGTAGATTTTCACCCGATTTCCGGTTTAC 206
Query 180 TCGCCACCGCCGGAGCCGATTACGACATCAAGCTATGGTTGATAAATTCTGGTCAAGCGG 239
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 207 TCGCCACCGCCGGAGCCGATTACGATATCAAGCTATGGTTGATAAATTCGGGTCAAGCGG 266
Query 240 AGAAGAAGGTTCCTAGTGTATCTTATCAGAGTAGCCTTACTTACCATGGATGTGCTGTCA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 267 AGAAGAAGGTTCCTAGTGTATCTTATCAGAGTAGCCTTACTTACCATGGATGTGCTGTCA 326
Query 300 ATACCATTCGTTTTTCTCCATCTGGGGAACTACTTGCCTCGGGAGCAGATGGAGGCGAGC 359
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 327 ATACCATTCGTTTTTCTCCATCTGGGGAACTACTTGCCTCGGGAGCAGACGGAGGTGAGC 386
Query 360 TTATTATATGGAAGTTGCATCCTAGTGAAACCAATCAGTCCTGGAAAGTTCACAAATCTT 419
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 387 TTTTTATATGGAAGTTGCATCCTAGTGAAACCAATCAGTCCTGGAAAGTTCACAAATCAT 446
Query 420 TATCATTTCATCGAAAGGATGTCCTGGATCTCCAATGGTCTCCTGATGATGCCTATCTGA 479
||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||| |
Sbjct 447 TATCATTTCATCGAAAGGATGTCCTGGATCTTCAGTGGTCTCCTGATGATGCATATCTTA 506
Query 480 TTTCTGGCTCAGTGGACAACTCTTGCATTATATGGGACGTTAGCAAAGGTACTGTCCATC 539
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 507 TTTCTGGCTCAGTGGACAACTCTTGCATTATATGGGACGTTAACAAAGGTTCTGTCCATC 566
Query 540 AGATACTGGATGCCCACTGTCATTATGTTCAAGGTGTTGCCTGGGATCCCTTAGCTAAGT 599
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 567 AGATACTGGATGCCCATTGTCATTATGTTCAAGGTGTTGCCTGGGATCCCTTAGCAAAGT 626
Query 600 ATGTAGCCTCTCTTAGTTCAGACAGAACATGCCGTATATATGTCAATAAGCCTCAAACAA 659
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 627 ATGTAGCCTCTCTTAGTTCAGACAGAACATGCCGTATATATGCCAATAAGCCTCAAACAA 686
Query 660 AGAGTAAAGGTGTTGAAAAAATGAACTATGTTTGCCAGCATGTTATCACAAAAGCAGATC 719
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 687 AGAGTAAAGGTGTTGAAAAAATGAACTATGTTTGCCAGCATGTTATCATGAAAGCAGATC 746
Query 720 AGCAACGGGGAGATGAGACTAAGACAATAAAAACCCATCTCTTTCATGATGAGACATTGC 779
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 747 AGCAACGGGGTGATGAAACTAAGACAATAAAAACCCATCTCTTTCATGATGAGACATTGC 806
Query 780 CGTCTTTCTTTCGAAGATTGTCATGGTCACCTGATGGATCTTTTTTACTCATTCCAGCAG 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 807 CGTCTTTCTTTCGAAGATTGTCATGGTCACCTGATGGATCTTTTTTACTCATTCCAGCAG 866
Query 840 GTTCTTTCAAGGTTTCACCCACATCCGAAGCTGTAAATGCTACCTATGTCTTTTCTAGGA 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 867 GTTCTTTCAAGGTTTCACCCACATCCGAAGCTGTAAATGCTACCTATGTCTTTTCTAGGA 926
Query 900 AGGACCTTTCAAGACCTGCACTGCAGCTTCCAGGTGCCAGCAAACCGGTTGTAGTGGTTC 959
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 927 AGGACCTTTCAAGACCTGCACTGCAGCTTCCTGGCGCCAGCAAACCGGTTGTAGTGGTTC 986
Query 960 GTTTTTGCCCTGTTGCATTCAAACTCCGTGGTTCAAATTCTGAAGAGGGTTTCTTCAAGC 1019
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 987 GTTTTTGCCCTGTTGCATTTAAACTCCGTGGTTCAAGTTCTGAAGAGGGTTTCTTCAAGC 1046
Query 1020 TTCCTTACCGTCTTGTCTTTGCCATAGCAACTTTAAATTCGGTGTACATATATGACACAG 1079
||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||
Sbjct 1047 TTCCTTACCGTCTTGTCTTTGCCATTGCAACTTTAAACTCCGTGTACATATATGACACAG 1106
Query 1080 AGTGTGTTGCTCCAATTGCAGTCTTAGCAGGTCTCCACTACGCTGCAATAACCGATATAA 1139
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1107 AGTGTGTCGCTCCAATTGCAGTCTTAGCAGGTCTCCACTATGCTGCAATAACCGATATAA 1166
Query 1140 CATGGTCACCTAATGCATCGTATCTAGCACTGTCCTCACAAGATGGCTACTGCACACTAG 1199
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1167 CATGGTCACCTAATGCATCGTATCTGGCACTGTCCTCACAAGATGGCTATTGCACACTAG 1226
Query 1200 TTGAATTCGAAGATAACGAACTAGGAGAATCCATCCCTATCTCAATTACAGTTGGAAGGA 1259
||||||| |||||||| |||||||||||| | || | | || || ||||||||| ||
Sbjct 1227 TTGAATTTGAAGATAAAGAACTAGGAGAAGCTGTC--T--C-CATTT-CAGTTGGAAAGA 1280
Query 1260 AACCCGTCGATGCTGAGGAGAAAAAGCATGATTTAGAGAAAG-CTGATGAACTAATGACC 1318
|||| || |||| ||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1281 AACCTGTTGATGGTGAGGAGAAAAAGCATGATTTAGAGAAAGGC-GATGAACTAATGACA 1339
Query 1319 GAAACAACACCAGACGAGAGCAAGAAACAGGCTGAATTAGAACAAAACGAAGAGAACAAA 1378
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1340 GAAACAACACCAGACGAGAGCAAGAAACAAGCTGAATTAGAACAAAACGAAGAGAGCAAA 1399
Query 1379 CAGCCATTGCCGAGCAAAATTACCACGGATGGTGAGGAGAAAGAGCATGTTATGCAGAAA 1438
||||||||||| ||||||||||||||||||||| |||| ||||||||| |||||||||||
Sbjct 1400 CAGCCATTGCCAAGCAAAATTACCACGGATGGTAAGGAAAAAGAGCATATTATGCAGAAA 1459
Query 1439 ACCGATGATGAAGTGATGACAGAAACAAGGCATGAGGAAGAGAATCAGCCATTGCAGAGC 1498
|||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1460 ACCGATGATGAAGTAATGACAGAAACAAGACATGAGGAAGAGAATCAGCCATTACAGAGC 1519
Query 1499 AAAGTTAACACACCGGTCTCAAATAAACCAGCAAGGAAGCGCATCACACCAATGGCTATT 1558
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1520 AAAGTTAACACACCGGTCTCAAATAAACCAGCAAGGAAACGCATCACACCCATGGCTATT 1579
Query 1559 GACCCCTAATGAC-TGATGTTTTCTTTT-TCCATCTGTCTTGTA-CTCTGCTACAAATAT 1615
||||||| ||| | | || ||| | | | | | | || || ||||| ||||||||
Sbjct 1580 GACCCCTGATGTCGTCAT-TTTCCATCAGTGTTTTTTT-TT-TAACTCTGATACAAATAG 1636
Query 1616 CTTTCTCATAGTCTACATTTAGACATCAAA-TGTAT-GAATTGTATCGGCCATGTTGGAA 1673
||||||||||| |||||||||||||||||| || || | |||| | ||||||||||||||
Sbjct 1637 CTTTCTCATAGGCTACATTTAGACATCAAAATGAATCGTATTG-A-CGGCCATGTTGGAA 1694
Query 1674 ATGGACTTGTTTATTTAGTCATATGTCTCGTCTC-AAAGGCAATGTACATAGATAGACTC 1732
|||||||||||| |||||||||| |||||||||| |||||||||||||||| |||||
Sbjct 1695 ATGGACTTGTTTCTTTAGTCATACGTCTCGTCTCTAAAGGCAATGTACATA--TAGAC-- 1750
Query 1733 ACATATGTATGAACG--CA--TGTGATGGTTTTGCGTACATTGTGGATCATT-TCTGGGC 1787
|||| ||||||||| || || |||||||||||||||||||||||||||| | |||||
Sbjct 1751 ACAT--GTATGAACGTTCACATGAGATGGTTTTGCGTACATTGTGGATCATTAT-TGGGC 1807
Query 1788 TCGTA 1792
|||||
Sbjct 1808 TCGTA 1812
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88654162470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5