BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496679
Length=689
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64650.1 | Symbols: | Ribosomal protein L17 family protein ... 990 0.0
AT5G09770.1 | Symbols: | Ribosomal protein L17 family protein ... 562 2e-159
> AT5G64650.1 | Symbols: | Ribosomal protein L17 family protein
| chr5:25839360-25840809 REVERSE LENGTH=699
Length=699
Score = 990 bits (536), Expect = 0.0
Identities = 642/692 (93%), Gaps = 11/692 (2%)
Strand=Plus/Plus
Query 1 TCGCATTTTCCGATCGCTTCGCCGTCGCAGAAATGACCAAGTTCAGGAAGCTCGGCCGCC 60
||||||| |||||||| |||||| || ||||||||||||||||||||||||||||||||
Sbjct 3 TCGCATTCTCCGATCGAATCGCCGACGGAGAAATGACCAAGTTCAGGAAGCTCGGCCGCC 62
Query 61 CAGCTGGTCATCGTATGTCCATGCTCAGGACTATGGTTTCTCAATTGGTGAAACACGAGA 120
|||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 63 CAGCAGGTCACCGTATGTCCATGCTCAGGACTATGGTTTCTCAATTGGTGCAACACGAGC 122
Query 121 GAATTGAGACCACTGTTGCAAAGGCTAAAGAAGTCCGTCGTCTTGCTGATAATATGGTTC 180
||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||
Sbjct 123 GAATTGAGACCACTGTTACAAAGGCTAAAGAAGTTCGTCGTCTTGCTGATAATATGATTC 182
Query 181 AACTTGGAAAAGAGGGCTCACTCGCTGCAGCAAGACGAGCTGCTGGGTTTGTTAGAGGAG 240
|||| ||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 183 AACTCGGAAAAGAGGGTTCACTAGCTGCAGCAAGAAGAGCTGCTGGGTTTGTTAGAGGAG 242
Query 241 ATGATGTACTTCACAAGATTTTTACAGAATTGGCTTATCGATACAAAGATAGAGCTGGTG 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 243 ATGATGTACTTCACAAGATTTTTACAGAATTGGCTCATCGATACAAAGATAGAGCTGGTG 302
Query 301 GATACACAAGAATGCTTCGTACTCGCATACGTGTTGGTGATGCTGCACCAATGGCCTATA 360
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 303 GATACACAAGAATGCTTCGTACTCGCATTCGTGTTGGTGATGCTGCCCCAATGGCCTATA 362
Query 361 TCGAGTTTATTGATAGAGAGAACGAGCTAAGACAATCAAAACCAGCAACACCTCAACCGC 420
|||||||||| |||||||||||||||||||| |||||||||||||| || |||||||| |
Sbjct 363 TCGAGTTTATCGATAGAGAGAACGAGCTAAGGCAATCAAAACCAGCTACTCCTCAACCTC 422
Query 421 CACCTCGAGTGCCGCTTGATCCATGGGCTAGATCCCGTCTCACCAGGCAGTATGCTCCAC 480
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 CACCTCGAGTGCCACTTGATCCATGGGCTAGATCCCGTCTCACCAGGCAGTATGCTCCAC 482
Query 481 CAAAGGAGGAGAAAAGTTGGGATTCCGACCTATAAATATAAGA---TCTCTCTCGCTCTC 537
|||||||||| |||| || ||||| |||||||||||| |||| ||||||||||||||
Sbjct 483 CAAAGGAGGAAAAAACTTCTGATTCTGACCTATAAATAGAAGAAGATCTCTCTCGCTCTC 542
Query 538 TCACACCAAAAGATCATGTTTTGTTCCCCTTGCCCTGTTGCCCATGTTGTTTCTCTTTCA 597
|||||||| ||||||||||||| || || |||| | |||||||||||||||| ||||
Sbjct 543 TCACACCAGAAGATCATGTTTT-TT----TTCCCCT-T-GCCCATGTTGTTTCTCCTTCA 595
Query 598 ACCCATAGCTTTGTGTGTCTGTCACCTTATTCATCAATGTCATTCACAATATGTGTTGAA 657
|||||||||||||| |||||| |||||||||||||| ||||||||||||| ||| || ||
Sbjct 596 ACCCATAGCTTTGTATGTCTGGCACCTTATTCATCACTGTCATTCACAATGTGT-TTAAA 654
Query 658 ACAGTTTAAATGTAGTTTCCTTGAAGCATCAA 689
||||||||||||||||||||||||||||||||
Sbjct 655 ACAGTTTAAATGTAGTTTCCTTGAAGCATCAA 686
> AT5G09770.1 | Symbols: | Ribosomal protein L17 family protein
| chr5:3035040-3036561 REVERSE LENGTH=753
Length=753
Score = 562 bits (304), Expect = 2e-159
Identities = 426/486 (88%), Gaps = 4/486 (1%)
Strand=Plus/Plus
Query 12 GATCGCTTCGCCGTCGCAGAAATGACCAAGTTCAGGAAGCTCGGCCGCCCAGCTGGTCAT 71
|||| |||| ||| |||||||||||| |||||||||||||| || || || || |||||
Sbjct 23 GATCACTTCTCCGACGCAGAAATGACGAAGTTCAGGAAGCTTGGTCGGCCGGCGGGTCAC 82
Query 72 CGTATGTCCATGCTCAGGACTATGGTTTCTCAATTGGTGAAACACGAGAGAATTGAGACC 131
|||||||||||||| ||||||||||||||||| |||||||| |||||| | |||||||||
Sbjct 83 CGTATGTCCATGCTTAGGACTATGGTTTCTCAGTTGGTGAAGCACGAGCGTATTGAGACC 142
Query 132 ACTGTTGCAAAGGCTAAAGAAGTCCGTCGTCTTGCTGATAATATGGTTCAACTTGGAAAA 191
||||| | ||||||||||| || ||||||||||||||||||||| ||||||| || |||
Sbjct 143 ACTGTCACTAAGGCTAAAGAGGTTCGTCGTCTTGCTGATAATATGATTCAACTCGGCAAA 202
Query 192 GAGGGCTCACTCGCTGCAGCAAGACGAGCTGCTGGGTTTGTTAGAGGAGATGATGTACTT 251
||||| |||||| |||| ||||| ||||| ||||| ||||| |||||||||||||| |||
Sbjct 203 GAGGGGTCACTCTCTGCTGCAAGGCGAGCAGCTGGTTTTGTGAGAGGAGATGATGTCCTT 262
Query 252 CACAAGATTTTTACAGAATTGGCTTATCGATACAAAGATAGAGCTGGTGGATACACAAGA 311
||||||||||| |||||| |||| || ||||||||||||||||||||||||||||||||
Sbjct 263 CACAAGATTTTCACAGAACTGGCACATAGATACAAAGATAGAGCTGGTGGATACACAAGA 322
Query 312 ATGCTTCGTACTCGCATACGTGTTGGTGATGCTGCACCAATGGCCTATATCGAGTTTATT 371
|||| |||||||||||||| |||||||||||||| || |||||||||||||||||||||
Sbjct 323 CTGCTACGTACTCGCATACGAGTTGGTGATGCTGCTCCTATGGCCTATATCGAGTTTATT 382
Query 372 GATAGAGAGAACGAGCTAAGACAATCAAAACCAGCAACACCTCAACCGCCACCTCGAGTG 431
|| |||||||||||||| || |||||||||||||||||||||||||| || | ||||||
Sbjct 383 GACAGAGAGAACGAGCTTAGGCAATCAAAACCAGCAACACCTCAACCACCGCAACGAGTG 442
Query 432 CCGCTTG-ATCCATGGGCTAGATCCCGTCTCACCAGGCAGTAT-GCTCCACCAAAGGAGG 489
|| ||| | ||||||| ||||| || ||||||||||||| | ||||| || |||||||
Sbjct 443 CCA-TTGGACCCATGGGAAAGATCTCGGCTCACCAGGCAGT-TCGCTCCGCCTAAGGAGG 500
Query 490 AGAAAA 495
||||||
Sbjct 501 AGAAAA 506
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33355473608
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5