BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg496679 Length=689 Score E Sequences producing significant alignments: (Bits) Value AT5G64650.1 | Symbols: | Ribosomal protein L17 family protein ... 990 0.0 AT5G09770.1 | Symbols: | Ribosomal protein L17 family protein ... 562 2e-159 > AT5G64650.1 | Symbols: | Ribosomal protein L17 family protein | chr5:25839360-25840809 REVERSE LENGTH=699 Length=699 Score = 990 bits (536), Expect = 0.0 Identities = 642/692 (93%), Gaps = 11/692 (2%) Strand=Plus/Plus Query 1 TCGCATTTTCCGATCGCTTCGCCGTCGCAGAAATGACCAAGTTCAGGAAGCTCGGCCGCC 60 ||||||| |||||||| |||||| || |||||||||||||||||||||||||||||||| Sbjct 3 TCGCATTCTCCGATCGAATCGCCGACGGAGAAATGACCAAGTTCAGGAAGCTCGGCCGCC 62 Query 61 CAGCTGGTCATCGTATGTCCATGCTCAGGACTATGGTTTCTCAATTGGTGAAACACGAGA 120 |||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 63 CAGCAGGTCACCGTATGTCCATGCTCAGGACTATGGTTTCTCAATTGGTGCAACACGAGC 122 Query 121 GAATTGAGACCACTGTTGCAAAGGCTAAAGAAGTCCGTCGTCTTGCTGATAATATGGTTC 180 ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||| Sbjct 123 GAATTGAGACCACTGTTACAAAGGCTAAAGAAGTTCGTCGTCTTGCTGATAATATGATTC 182 Query 181 AACTTGGAAAAGAGGGCTCACTCGCTGCAGCAAGACGAGCTGCTGGGTTTGTTAGAGGAG 240 |||| ||||||||||| ||||| |||||||||||| |||||||||||||||||||||||| Sbjct 183 AACTCGGAAAAGAGGGTTCACTAGCTGCAGCAAGAAGAGCTGCTGGGTTTGTTAGAGGAG 242 Query 241 ATGATGTACTTCACAAGATTTTTACAGAATTGGCTTATCGATACAAAGATAGAGCTGGTG 300 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 243 ATGATGTACTTCACAAGATTTTTACAGAATTGGCTCATCGATACAAAGATAGAGCTGGTG 302 Query 301 GATACACAAGAATGCTTCGTACTCGCATACGTGTTGGTGATGCTGCACCAATGGCCTATA 360 |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 303 GATACACAAGAATGCTTCGTACTCGCATTCGTGTTGGTGATGCTGCCCCAATGGCCTATA 362 Query 361 TCGAGTTTATTGATAGAGAGAACGAGCTAAGACAATCAAAACCAGCAACACCTCAACCGC 420 |||||||||| |||||||||||||||||||| |||||||||||||| || |||||||| | Sbjct 363 TCGAGTTTATCGATAGAGAGAACGAGCTAAGGCAATCAAAACCAGCTACTCCTCAACCTC 422 Query 421 CACCTCGAGTGCCGCTTGATCCATGGGCTAGATCCCGTCTCACCAGGCAGTATGCTCCAC 480 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 423 CACCTCGAGTGCCACTTGATCCATGGGCTAGATCCCGTCTCACCAGGCAGTATGCTCCAC 482 Query 481 CAAAGGAGGAGAAAAGTTGGGATTCCGACCTATAAATATAAGA---TCTCTCTCGCTCTC 537 |||||||||| |||| || ||||| |||||||||||| |||| |||||||||||||| Sbjct 483 CAAAGGAGGAAAAAACTTCTGATTCTGACCTATAAATAGAAGAAGATCTCTCTCGCTCTC 542 Query 538 TCACACCAAAAGATCATGTTTTGTTCCCCTTGCCCTGTTGCCCATGTTGTTTCTCTTTCA 597 |||||||| ||||||||||||| || || |||| | |||||||||||||||| |||| Sbjct 543 TCACACCAGAAGATCATGTTTT-TT----TTCCCCT-T-GCCCATGTTGTTTCTCCTTCA 595 Query 598 ACCCATAGCTTTGTGTGTCTGTCACCTTATTCATCAATGTCATTCACAATATGTGTTGAA 657 |||||||||||||| |||||| |||||||||||||| ||||||||||||| ||| || || Sbjct 596 ACCCATAGCTTTGTATGTCTGGCACCTTATTCATCACTGTCATTCACAATGTGT-TTAAA 654 Query 658 ACAGTTTAAATGTAGTTTCCTTGAAGCATCAA 689 |||||||||||||||||||||||||||||||| Sbjct 655 ACAGTTTAAATGTAGTTTCCTTGAAGCATCAA 686 > AT5G09770.1 | Symbols: | Ribosomal protein L17 family protein | chr5:3035040-3036561 REVERSE LENGTH=753 Length=753 Score = 562 bits (304), Expect = 2e-159 Identities = 426/486 (88%), Gaps = 4/486 (1%) Strand=Plus/Plus Query 12 GATCGCTTCGCCGTCGCAGAAATGACCAAGTTCAGGAAGCTCGGCCGCCCAGCTGGTCAT 71 |||| |||| ||| |||||||||||| |||||||||||||| || || || || ||||| Sbjct 23 GATCACTTCTCCGACGCAGAAATGACGAAGTTCAGGAAGCTTGGTCGGCCGGCGGGTCAC 82 Query 72 CGTATGTCCATGCTCAGGACTATGGTTTCTCAATTGGTGAAACACGAGAGAATTGAGACC 131 |||||||||||||| ||||||||||||||||| |||||||| |||||| | ||||||||| Sbjct 83 CGTATGTCCATGCTTAGGACTATGGTTTCTCAGTTGGTGAAGCACGAGCGTATTGAGACC 142 Query 132 ACTGTTGCAAAGGCTAAAGAAGTCCGTCGTCTTGCTGATAATATGGTTCAACTTGGAAAA 191 ||||| | ||||||||||| || ||||||||||||||||||||| ||||||| || ||| Sbjct 143 ACTGTCACTAAGGCTAAAGAGGTTCGTCGTCTTGCTGATAATATGATTCAACTCGGCAAA 202 Query 192 GAGGGCTCACTCGCTGCAGCAAGACGAGCTGCTGGGTTTGTTAGAGGAGATGATGTACTT 251 ||||| |||||| |||| ||||| ||||| ||||| ||||| |||||||||||||| ||| Sbjct 203 GAGGGGTCACTCTCTGCTGCAAGGCGAGCAGCTGGTTTTGTGAGAGGAGATGATGTCCTT 262 Query 252 CACAAGATTTTTACAGAATTGGCTTATCGATACAAAGATAGAGCTGGTGGATACACAAGA 311 ||||||||||| |||||| |||| || |||||||||||||||||||||||||||||||| Sbjct 263 CACAAGATTTTCACAGAACTGGCACATAGATACAAAGATAGAGCTGGTGGATACACAAGA 322 Query 312 ATGCTTCGTACTCGCATACGTGTTGGTGATGCTGCACCAATGGCCTATATCGAGTTTATT 371 |||| |||||||||||||| |||||||||||||| || ||||||||||||||||||||| Sbjct 323 CTGCTACGTACTCGCATACGAGTTGGTGATGCTGCTCCTATGGCCTATATCGAGTTTATT 382 Query 372 GATAGAGAGAACGAGCTAAGACAATCAAAACCAGCAACACCTCAACCGCCACCTCGAGTG 431 || |||||||||||||| || |||||||||||||||||||||||||| || | |||||| Sbjct 383 GACAGAGAGAACGAGCTTAGGCAATCAAAACCAGCAACACCTCAACCACCGCAACGAGTG 442 Query 432 CCGCTTG-ATCCATGGGCTAGATCCCGTCTCACCAGGCAGTAT-GCTCCACCAAAGGAGG 489 || ||| | ||||||| ||||| || ||||||||||||| | ||||| || ||||||| Sbjct 443 CCA-TTGGACCCATGGGAAAGATCTCGGCTCACCAGGCAGT-TCGCTCCGCCTAAGGAGG 500 Query 490 AGAAAA 495 |||||| Sbjct 501 AGAAAA 506 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33355473608 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5