BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg496681

Length=498
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G64667.1 | Symbols: IDL2 | inflorescence deficient in abscis...   556    5e-158


> AT5G64667.1 | Symbols: IDL2 | inflorescence deficient in abscission 
(IDA)-like 2 | chr5:25850656-25851337 FORWARD LENGTH=682
Length=682

 Score =  556 bits (301),  Expect = 5e-158
 Identities = 390/430 (91%), Gaps = 18/430 (4%)
 Strand=Plus/Plus

Query  1    ATTTCTTGCTGTCAACAAATTCATTCAGCAATCTCCTTTTTCCCCATCAACAACAAAC-A  59
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  1    ATTTCTTGCTGTCAACAAATTCATTCAGCAATCTCCTTTTTCCCCATCAACAACAAACAA  60

Query  60   AAAATAAAGTCCTTTCACAACAATTATA-TTA-AACAAATCCACCAAAAACCCTTTCACA  117
            |||||||||||||||||||||||||||| ||| ||||||| |||||||||||||| ||||
Sbjct  61   AAAATAAAGTCCTTTCACAACAATTATATTTAGAACAAATTCACCAAAAACCCTTCCACA  120

Query  118  AAATAGGTCTC-TCTTCAACAATGTCGTCTAGAAACCGAAGATCAAGAATCAACTCTAAG  176
            ||| |  |||| |||||||||||||||||| |||||| |||||||||||||| |||| ||
Sbjct  121  AAAAACCTCTCTTCTTCAACAATGTCGTCTCGAAACCAAAGATCAAGAATCACCTCT-AG  179

Query  177  ----ttc-t-t-cttcttcacaagtaccattcttcttc-t-tc--tc--cttctAGGTTT  223
                ||| | | ||||||||| || ||||||||||||| | ||  ||  ||||| |||||
Sbjct  180  TTTCTTCGTCTCCTTCTTCACTAGAACCATTCTTCTTCTTCTCATTCTTCTTCTTGGTTT  239

Query  224  ATGCAATGGAGCAAGAACAAACTCGAACGTCTTCGACTCGAAACCACACAAGAAACACAA  283
             ||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||
Sbjct  240  CTGCAATGGAGCAAGAACAAACACGAACGTCTTCAACTCGAAACCACACAAGAAGCACAA  299

Query  284  CGACGCCGTTTCGTCTTCATCGAAACAGTTCTTGGGGTTCTTGCCACGTCACTTCCCTGT  343
            |||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct  300  CGACGCCGTTTCTTCTTCAACTAAACAGTTCTTGGGGTTCTTGCCACGTCACTTCCCTGT  359

Query  344  TCCAGCTTCTGGTCCCTCTAGAAAACACAATGATATCGGTTTACTTAGTTGGCACCGAGC  403
            |||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||| |
Sbjct  360  TCCAGCTTCTGGTCCCTCCAGAAAACACAATGATATTGGTTTACTTAGTTGGCATCGATC  419

Query  404  TTCTCCGTGA  413
            ||||||||||
Sbjct  420  TTCTCCGTGA  429



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23760751531


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5