BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496682
Length=1200
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64670.1 | Symbols: | Ribosomal protein L18e/L15 superfamil... 1812 0.0
> AT5G64670.1 | Symbols: | Ribosomal protein L18e/L15 superfamily
protein | chr5:25852267-25853989 REVERSE LENGTH=1223
Length=1223
Score = 1812 bits (981), Expect = 0.0
Identities = 1133/1205 (94%), Gaps = 15/1205 (1%)
Strand=Plus/Plus
Query 1 AAATCTCATAAACCCTAAATCCCCAAAATGGCATAATCAAATTTTCATCAGAAGAAGATC 60
||||||||||||||||||||||||||||||| ||||||||| ||||||||| | |||||
Sbjct 16 AAATCTCATAAACCCTAAATCCCCAAAATGGAATAATCAAAATTTCATCAG--G-AGATC 72
Query 61 GCTAAAATCGAAATCTGCTTGATCCCGCAACGAAGAAATGATAAGAAGAAGACTCTCGTC 120
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 73 TCTAAAATCGAAATCTACTTGATCCCGCAACGAAGAAATGTTAAGAAGAAGACTCTTGTC 132
Query 121 GATCATATCAACATCACTCATCAATTCTTCGTTTCATCAAACCGCAAAACCCAGATTCAT 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 133 GATCATATCAACATCACTCATCAATTCTTCGTTTCATCAAACCGCGAAACCCAGATTCAT 192
Query 181 CATCTCTTCACCACTTCTTCAATGCCGTCATTCTCCGATCTCTACTCAAATCCCGACCTT 240
||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 193 CATTTCTTCACCACTTCTTCAATGCCGTCCTTCTCCGATCTCTACTCAAATTCCGACCTC 252
Query 241 TACGAGCAGGGCTTTGTCGTTTCAGGGAACT-AGGGCGTATAGTTTATTGAGCTTGAACG 299
|||||||||||||||||||||||| |||| | ||||| ||||||||||||||||||||||
Sbjct 253 TACGAGCAGGGCTTTGTCGTTTCAAGGAA-TCAGGGCTTATAGTTTATTGAGCTTGAACG 311
Query 300 ATCTGAGAGACAATGTGCCGAGAAAGCTCAAGACGAGGAAAGGAAGAGGTATTGGGTCTG 359
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 312 ATCTGAGAGACAATGTGCCGAGAAAACTCAAGACGAGGAAAGGAAGAGGTATTGGGTCTG 371
Query 360 GTAAAGGTAAAACTGCTGGAAGAGGTCACAAGGGGCAAAAAGCGAGAGGAACAATGAAGT 419
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 372 GTAAAGGTAAAACTGCTGGAAGAGGTCACAAGGGGCAAAAAGCGAGAGGAACGATGAAGT 431
Query 420 TTGGTTTTGAAGGTGGGCAAACTCCATTGCGACGTCGTTTACCTAAACGTGGCTTCAAGA 479
||||||| |||||||| || |||||| | |||||||||||||| ||||||||||||||||
Sbjct 432 TTGGTTTCGAAGGTGGTCAGACTCCACTACGACGTCGTTTACCCAAACGTGGCTTCAAGA 491
Query 480 ACAAGTTTAAGCTCCATTTTCAGCCGGTTGGTCTAGGAAAGATCGCCAAACTCATAAACG 539
|||| |||||||||||||||||||||||||||||||| ||||| || |||||||||||||
Sbjct 492 ACAAATTTAAGCTCCATTTTCAGCCGGTTGGTCTAGGGAAGATTGCTAAACTCATAAACG 551
Query 540 CTGGGAAGATAGATTCTCATGAATTGATTACGATGAAAACGCTCAAGGATGTGGGAGCCA 599
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 552 CTGGGAAGATAGATTCTCATGAATTGATTACAATGAAAACGCTCAAGGATGTGGGAGCCA 611
Query 600 TAGGAAAGCAAATAGAAGATGGAGTAAGACTAATGGGTCGTGGTGCTGATGATATCCAAT 659
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 612 TAGGAAAGCAAATAGAAGATGGAGTAAGACTAATGGGTCGTGGTGCTGATGATATCAAAT 671
Query 660 GGCCACTTCATTTCGAGGTTTCGAGAGTGACGGTTAGGGCAAAAGAGGTGGTGGAAGCAG 719
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 672 GGCCACTTCATTTCGAGGTTTCGAGAGTGACGGTTAGGGCCAAAGAGGTGGTGGAAGCAG 731
Query 720 CAGGAGGATCAGTGAGAAGAGTGTATTACAACAAGTTGGGCTTAAGAGCATTGCTTAAAC 779
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 732 CAGGAGGATCAGTGAGAAGAGTGTATTACAACAAGTTGGGCTTAAGGGCATTGCTTAAAC 791
Query 780 CGGAATGGTTTGAGAAGAAAGGAAGGTTATTGCCGAAAGCAGCGCGACCACCTCCTAAAC 839
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 792 CGGAATGGTTTGAGAAGAAAGGAAGGTTATTGCCAAAAGCAGCGCGACCACCTCCTAAAC 851
Query 840 AACAAGATAAGGTTGATAGCATTGGACGTCTTCCAGCTCCGAAAAAACCCATTCCCTTCT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 852 AACAAGATAAGGTTGATAGCATTGGACGTCTTCCAGCTCCGAAAAAACCCATTCCCTTCT 911
Query 900 TTGCAGCTGAGGAAAACAAAGTTGATTCCCCTGTTGAATCATGATTT-GGGATTGGC-TT 957
||||||||||||| | ||||||||| || ||||||||||||| |||| ||| | | | ||
Sbjct 912 TTGCAGCTGAGGAGACCAAAGTTGAATCTCCTGTTGAATCATAATTTTGGGCT-GCCATT 970
Query 958 CTAACGTTTGATGTTTCGGTTTAAAGTTGTTTGTGTTGTTTCTTGGTCAAAGTTCTC-AC 1016
|||||||||||||||| |||||| ||||||||||||||||||||||||| |||| | ||
Sbjct 971 -TAACGTTTGATGTTTCTGTTTAA-GTTGTTTGTGTTGTTTCTTGGTCAATGTTCACCAC 1028
Query 1017 CAGAAGATTGAGAATGCCGGATATTTTTAGTTGCCAAATAAGGTCTTTCTCGTTTTACTT 1076
|||| |||||||||| ||||| ||| | ||| ||||||||||||||||||||||||||
Sbjct 1029 TAGAAAATTGAGAATGTCGGAT-TTTA-ATTTGACAAATAAGGTCTTTCTCGTTTTACTT 1086
Query 1077 TTTCTGTATTTGGTCGCAACAAGTTCTT-AACCATTTTCAGACTTCTTGTTTGGGATCAA 1135
| |||||| |||| | ||||||||| || |||||||||||||||| ||||||||||||||
Sbjct 1087 TATCTGTAGTTGGCCACAACAAGTTATTCAACCATTTTCAGACTTGTTGTTTGGGATCAA 1146
Query 1136 GGCCTGTTCTTGAAGAAGGTAGAGGAAACAAGTGAACAATCTACGTTAGATTTGAATTCA 1195
|||||||||||| ||||||| ||| |||| || |||||||| ||||||||||||||||||
Sbjct 1147 GGCCTGTTCTTGTAGAAGGTTGAGAAAACCAGAGAACAATC-ACGTTAGATTTGAATTCA 1205
Query 1196 TTATT 1200
|||||
Sbjct 1206 TTATT 1210
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58935439830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5