BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496683
Length=825
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64680.3 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 979 0.0
AT5G64685.1 | Symbols: | transposable element gene | chr5:2585... 165 6e-40
> AT5G64680.3 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; Has 53 Blast hits to 53 proteins in 20 species:
Archae - 0; Bacteria - 8; Metazoa - 8; Fungi - 0; Plants
- 34; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
| chr5:25854140-25855484 FORWARD LENGTH=857
Length=857
Score = 979 bits (530), Expect = 0.0
Identities = 752/853 (88%), Gaps = 39/853 (5%)
Strand=Plus/Plus
Query 1 GTTTTAGGTCATCGCCGCCATCGATATTTCTCCGTTTTTGTGACCTCGTGAGAGCTGATT 60
||||||||||||||||| || | |||||||||| |||||||| ||| |||||||||||
Sbjct 1 GTTTTAGGTCATCGCCG-AATTGCTATTTCTCCGGTTTTGTGAAATCGCGAGAGCTGATT 59
Query 61 TGAGCAGAGATGGA-TTCTGGTTAT-AAACCTGCCGAAGATTACGTAGTCAGTGGCGCAG 118
|||||||||||||| ||| | || | ||| | ||| ||||| | |||||||||||||||
Sbjct 60 TGAGCAGAGATGGATTTC-GATT-TCAAAGTTTCCGGAGATTTCATAGTCAGTGGCGCAG 117
Query 119 AGCAGCTAGATGACGCTGATATAACGCGTTCTGATGAGCTTTGGCTTATCCAAGCCCCTT 178
|||||||||||||| ||||| | ||||||||||||||| |||||||||||||||||||||
Sbjct 118 AGCAGCTAGATGACACTGATTTGACGCGTTCTGATGAGTTTTGGCTTATCCAAGCCCCTT 177
Query 179 TAGGCCGATTTCCAGAAATCGAAGAGGACACTCTTAAGGTTGAGCCAGACAAAGATGGGT 238
|||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 178 TAGGCCAATTTCCAGAAATCGAAGAGAACACTCTTAAGATTGAGCCAGACAAAGATGGGT 237
Query 239 TATTTGGAGGATTCGAGG------A---T---TCA--A-A--------T-GGTGGAAAGT 274
||||||||| |||| ||| | | ||| | | | |||| |||||
Sbjct 238 TATTTGGAGAATTCAAGGATTCAAATGCTGGCTCATTACACCTTTGTTTAGGTGCAAAGT 297
Query 275 ATGATCTTGCTAGCTTTAC-TTGTCAAGATGTTGATGCAGAGTTGATTATACCTTCTGAA 333
||||||||||||||||| | || |||||||| || |||||||||||||||||||||||||
Sbjct 298 ATGATCTTGCTAGCTTT-CATTCTCAAGATGCTGGTGCAGAGTTGATTATACCTTCTGAA 356
Query 334 GAATCAATGATTGCTGGGAAGATTGCTCGGCGGGTTGCAATAGTTCGTTACCCTGAACCA 393
||||||||||||| |||||||||| ||||||| |||||| ||||||||||||||||||||
Sbjct 357 GAATCAATGATTGTTGGGAAGATTACTCGGCGAGTTGCATTAGTTCGTTACCCTGAACCA 416
Query 394 AACGAGCTGCTTCAGAAAATGAAGGCCAGAACACAACAGAAGCTTGTTGGATCAGTCACG 453
|||||| ||||||||||||||||||| |||||||||||||||||||| |||||||| |||
Sbjct 417 AACGAGTTGCTTCAGAAAATGAAGGCTAGAACACAACAGAAGCTTGTCGGATCAGTGACG 476
Query 454 AATTCCTCTAAGAAATCATCTAACCTAACTCAAAGCAGCCGGCATAAAAGCGGTACACGT 513
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 477 AATTCCTCTAAGAAATCATCTAACCTTACTCAAAGCAGCCGGCATAAAAGCGGCACACGT 536
Query 514 AGCAGCAAATCGAAGAGCATGTTCTCTAGCTTCACCGAGACTCCAAAGTCGCCAAAAAGA 573
||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 537 AGCAGCAGAGAGAAGAGCATGTTCTCTGGCTTCACCGAGACTCCAAAGTCGCCAAAAAGA 596
Query 574 AAACATTCAGAGTCCTCCTCAGGTAAACATCGGAGCTCAACAAGTACCGTTTCAGGGTCT 633
||| |||||||||| |||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 597 AAAAATTCAGAGTCTTCCTCAGGTAAACATCGGAGCTCAACAAGTACGGTTTCAGGCTCT 656
Query 634 TCAGAACGATCGGgaaagattaagaagaagaaggtgaagaaggaagaataaagaTCTTTA 693
||||||||||| | |||| | | | ||||||||||||||||||||| |||||||||||
Sbjct 657 TCAGAACGATCAGCAAAG-TCCA-A-GAAGAAGGTGAAGAAGGAAGAGTAAAGATCTTTG 713
Query 694 CGCCTGtttttttttttGTAAGAGAGTGTTTGTGGCTGTTAAGATGTTGAATTTCGATTA 753
| ||||||||||| |||||| |||||||| |||||||||||||||||||||||||
Sbjct 714 CTCCTGTTTTTTTCA----AAGAGAATGTTTGTGACTGTTAAGATGTTGAATTTCGATTA 769
Query 754 TGCAGACGATAAACAGCCAGTATTGAATTGTA-TTCATAAGTTATTTCGCCATAGATGCT 812
|||||| ||||||||||||||| || ||| | |||||||||||||||||| ||||||||
Sbjct 770 TGCAGATGATAAACAGCCAGTAATGTATTCAAATTCATAAGTTATTTCGCCGTAGATGCT 829
Query 813 TATAAAAGTTCAA 825
|||||||||||||
Sbjct 830 TATAAAAGTTCAA 842
> AT5G64685.1 | Symbols: | transposable element gene | chr5:25855347-25857377
REVERSE LENGTH=2031
Length=2031
Score = 165 bits (89), Expect = 6e-40
Identities = 112/123 (91%), Gaps = 1/123 (1%)
Strand=Plus/Minus
Query 704 tttttttGTAAGAGAGTGTTTGTGGCTGTTAAGATGTTGAATTTCGATTATGCAGACGAT 763
||||||| |||||| |||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 2031 TTTTTTTCAAAGAGAATGTTTGTGACTGTTAAGATGTTGAATTTCGATTATGCAGATGAT 1972
Query 764 AAACAGCCAGTATTGAATT-GTATTCATAAGTTATTTCGCCATAGATGCTTATAAAAGTT 822
|||||||||||| || ||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 1971 AAACAGCCAGTAATGTATTCAAATTCATAAGTTATTTCGCCGTAGATGCTTATAAAAGTT 1912
Query 823 CAA 825
|||
Sbjct 1911 CAA 1909
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40187317600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5