BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496685
Length=1277
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64690.1 | Symbols: | neurofilament triplet H protein-relat... 1611 0.0
> AT5G64690.1 | Symbols: | neurofilament triplet H protein-related
| chr5:25862869-25864778 FORWARD LENGTH=1392
Length=1392
Score = 1611 bits (872), Expect = 0.0
Identities = 1166/1298 (90%), Gaps = 59/1298 (5%)
Strand=Plus/Plus
Query 1 ACCTCCGTTTTCAGCATTTCTCTCTCTAATCTCTCGGAAGATATAAGGCAAATCAAGAGA 60
|||| ||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||
Sbjct 1 ACCTTCGTTTTCAGCATTTCTCTCTCTAATCTATCGGAAGATAAAAGGCAAATTAAGAGA 60
Query 61 GAG--AA-A---------AT-AT-T-T-TT----TACGAGATGGGAAACTGTGCCATCAA 100
||| || | || || | | || ||||||||||||||||||||||||||
Sbjct 61 GAGAAAATATTTTTTCTCATAATCTGTGTTAACGTACGAGATGGGAAACTGTGCCATCAA 120
Query 101 GCCAAAGGTTCTCAAAGATTCTGACGAGGATCTGGCTCCGGTGGAGCGAGAGACGGCGGT 160
||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||
Sbjct 121 GCCAAAGGTTCTCAAAGATTCTGACGAGGATCTTGTTCCGGTGGAGCGAGAGACGACGGT 180
Query 161 TCTGGCTGATCATGACAAGGATCCGGCTG-AGAAGAGCGAGAACGTCATTGCTCCTAACG 219
|| | |||||| |||||| |||||||| | |||||| ||||||| ||||| |||||||||
Sbjct 181 TCCGACTGATCTTGACAAAGATCCGGC-GCAGAAGAACGAGAACATCATTTCTCCTAACG 239
Query 220 CTGCGGAAGAAGCTGCCGCTGCTGCACGACGGAGCGAGAAGGGAAAAGAGATTTTGATTG 279
||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 240 CTGCGGAGGAAGCTGCGGCTGCGGCACGACGGAGCGAGAAGGGAAAAGAGATTTTGATTG 299
Query 280 AAGATGACGTTGATGATCA-CCACAAACGCCCTTCTCTTAGTCACTTGTTTCATGAGGAC 338
|||||||| |||| ||||| || ||| ||||| |||||||||||||||||||||||||||
Sbjct 300 AAGATGACATTGAAGATCAACC-CAAGCGCCCATCTCTTAGTCACTTGTTTCATGAGGAC 358
Query 339 AAGACAGTAGTCGAAAAAGAAGTAACTGATCTAACTCCGAGAAAACCAGACACCAATAAC 398
||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 359 AAGACAGTAGTGGAAAAAGAAGTAACCGATCTAACTCCGACAAAACCAGACACCAATAAC 418
Query 399 AAAACCAGTCCTTCTTCAGAGATTTCAAAGCTTGATACTACTGCTTTAGGGGCTTCGAAT 458
|||||| |||||||||||||| |||||| | |||||||||||||||||| |||||| |||
Sbjct 419 AAAACCGGTCCTTCTTCAGAGGTTTCAATGTTTGATACTACTGCTTTAGTGGCTTCTAAT 478
Query 459 GTCAAAGATCCAAAAGA-ACCATTTGACGTTCAGACTCGAGATGACCTCGAAGTTAAGAT 517
| |||||||||| |||| | | |||||||||||||||||| |||||||||||||||||||
Sbjct 479 GCCAAAGATCCAGAAGATATC-TTTGACGTTCAGACTCGAAATGACCTCGAAGTTAAGAT 537
Query 518 TCCAAGAGATTCTGATGTTAAGACTCCTGAAACTCCTAAAGCTAAGGAAGCTGAAGAAAA 577
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 538 TCCAAAAGATTCTGATGTTAAGACTCCTGAAACTCCTAAAGCTAATGAAGCTGAAGATAA 597
Query 578 CTTTTCAGAGAATTGGGAAGTTAAGTTTCCAGAGGAGTTGGAAGCTAAGAAAACATCTGA 637
||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 598 CTTTTCAGAGAGTTGGGAAGTTAAGTTTCCAGAGGAATTGGAAGCTAAGAAGACATCTGA 657
Query 638 AGCTGTTAAGGTTGTAGAAGAGTCAAAACTTCCAGAAACTTATGAGGTTTCTGCTCCTGA 697
|| ||||||||||| ||||||||| ||| |||||||| | |||||||||||||
Sbjct 658 AGTTGTTAAGGTTGCAGAAGAGTCGAAAGTTCCAGAA------G---TTTCTGCTCCTGA 708
Query 698 ATTGTCTGAAATTAAGGTTACAAAAGGATCAGGTGTTCCTGAAGTCTTGGTGGATAAGAA 757
|||||||||||||||||||||||||| ||||| ||||||||||||||||| ||| |||||
Sbjct 709 ATTGTCTGAAATTAAGGTTACAAAAGAATCAGATGTTCCTGAAGTCTTGGAGGACAAGAA 768
Query 758 TATTCCAGAAGTTCCGGAAGTCAAGTCTGATGAAGTTAAAGTTGCAGAGTCAGAACTTCT 817
||| ||||||||| ||||| ||| |||||||||||||||| |||||||||||||||||
Sbjct 769 TATCCCAGAAGTTGTTGAAGTGAAGACTGATGAAGTTAAAGTCGCAGAGTCAGAACTTCT 828
Query 818 AAAGGTTTCAGAAGTTGAATCTACAGAGGATTTAGAGATTAAAGTTCCAAAAGTTTTTGA 877
||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||
Sbjct 829 AAAGGTTTCAGAAGTTGAAGCAACAGAGGATTTAGAGATTAAAGTTCCAAAAGTCTTTGA 888
Query 878 AGCCAAGACTCCTGAAACATCGAACGTTAAGGTTACAGATGAAGCAGAGGTAAAGACTGA 937
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 889 AGCCAAGACTCCTGAAACATCGAACGTTAAGGTTACAGGTGAAGCAGAGGTAAAGACTGA 948
Query 938 TCAACGATTGGAAGTTGAGGTCACAGAAGAAGAAAAGGAGGTTCCAGAGTTTGTGGATGC 997
||||||| |||||||||||||| |||| || |||| ||||||||||||||||||||||
Sbjct 949 TCAACGAGTGGAAGTTGAGGTCGCAGATGAC-AAAA--AGGTTCCAGAGTTTGTGGATGC 1005
Query 998 TAAAGAGAAGATCGAAAAATCTGATCAAGACAAAGAGATTGTGTTGCCTAAACCAGAGGG 1057
|||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1006 TAAAGAAAAGATCGACAAATCTGATCAAGACAAAGAGATTGTGTTGCCTAAAACAGAGGA 1065
Query 1058 AGCAGAAAAAGATGTGTCTTTGGAGAAGCAAGTCAAAGAGTCTACATTGTCTGATTTAGG 1117
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 AGAAGGGAAAGATGTGTCTTTGGAGAAGCAAGTCAAAGAGTCTACATTGTCTGATTTAGG 1125
Query 1118 AAACAAATGAGTTACAAGAGAAAC-AGCAGAGAAATTACCAATCAGGAGTAGCTAAAATG 1176
||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||
Sbjct 1126 AAACAAATGAGTTACAAGAGAGACTA-CAGAGAAATTACCAATCAGGAGTAGCTAAAATT 1184
Query 1177 ATAttttttt------t-t-AT-------a-aaa-caaaacaaaaaaCGATTTAGCATTC 1219
|||||||||| | | || | ||| |||||||||||||||||||||||||
Sbjct 1185 ATATTTTTTTCGACCATGTCATGGTTTTTATAAAACAAAACAAAAAACGATTTAGCATTC 1244
Query 1220 TTTAGGCAATTTCAGTTTGTGT--GTCTCTTTATTGTT 1255
|||||||||||||||||||||| || |||||||||||
Sbjct 1245 TTTAGGCAATTTCAGTTTGTGTATGTTTCTTTATTGTT 1282
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62800881795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5