BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496690
Length=1456
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64750.1 | Symbols: ABR1 | Integrase-type DNA-binding superf... 2185 0.0
> AT5G64750.1 | Symbols: ABR1 | Integrase-type DNA-binding superfamily
protein | chr5:25891506-25893888 FORWARD LENGTH=1581
Length=1581
Score = 2185 bits (1183), Expect = 0.0
Identities = 1373/1463 (94%), Gaps = 20/1463 (1%)
Strand=Plus/Plus
Query 1 TTCTAAAAtctctgtctttctttctttctctttgtctctgtttttttg-tt-tctctctc 58
|||||||||||||||||||||||||| ||||||||||||| ||| ||| || ||||||||
Sbjct 1 TTCTAAAATCTCTGTCTTTCTTTCTTCCTCTTTGTCTCTG-TTTCTTGTTTCTCTCTCTC 59
Query 59 t-ac-atacagagttttctttcCCTCGAAGAAAAAGAATATTTTTAAATTTAATTTTCTC 116
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TCTCTCTACAGAGTTTTCTTTCCCTCGAAGAAAAAGAATATTTTTAAATTTAATTTTCTC 119
Query 117 TGGGTTTATAAGCTTTAAGTCTCCGAGGAGGAGGATTTACAAGGAAGGATTTGTATGTGT 176
|| ||||||||||||||||| || ||||||||||||||| ||||| || |||||||||||
Sbjct 120 TGCGTTTATAAGCTTTAAGTTTCAGAGGAGGAGGATTTAGAAGGAGGGTTTTGTATGTGT 179
Query 177 GTCTTAAAAGTGGCAAATCAGGAAGATAACGTTGGCAAAAAAGCCGAGTCTACTAGAGAT 236
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 180 GTCTTAAAAGTGGCAAATCAGGAAGATAACGTTGGCAAAAAAGCCGAGTCTATTAGAGAC 239
Query 237 GATGATCATCGGACGTTATCTGAAATCGATCAATGGCTTTACTTCTACGCGGCCGAAGAC 296
|||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||
Sbjct 240 GATGATCATCGGACGTTATCTGAAATCGATCAATGGCTTTACTTATTCGCAGCCGAAGAC 299
Query 297 GACCACCTCCGTCATAACTTCGCTACGCACCCGCCTCCTCCATCGTCGTCCTCGTCCTCA 356
||||||| |||||||| |||| ||||||| | ||| |||||||||||| |||||||||
Sbjct 300 GACCACCACCGTCATAGCTTCCCTACGCAGCAGCCGCCTCCATCGTCG---TCGTCCTCA 356
Query 357 TCTCTTATGTCCGGTTTCAGTAGAGAGATGGAGACGTCTGCAATCGTCTCTGCTTTGACT 416
|||||||| || |||||||||||||||||||||| |||||| || |||||||||||||||
Sbjct 357 TCTCTTATCTCAGGTTTCAGTAGAGAGATGGAGATGTCTGCTATTGTCTCTGCTTTGACT 416
Query 417 CACGTTGTTGCCGGAAATGTTCCTCAGCATCAACAAGGAGGCGGTGAAGGTAGCGGAGAA 476
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 CACGTTGTTGCTGGAAATGTTCCTCAGCATCAACAAGGAGGCGGTGAAGGTAGCGGAGAA 476
Query 477 GGGACTTCGAATTCCTCTTCTTCCTCGGGACAGAAAAGGAGGAGAGATGTGGAGGAAGGT 536
|||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 477 GGGACTTCGAATTCGTCTTCTTCCTCGGGGCAGAAAAGGAGGAGAGAGGTGGAGGAAGGT 536
Query 537 GGTGGCAAAGCGGTTAAGGCCGCTAATACTTTGACGGTTGATCAATATTTTTCTGGTGGT 596
|| | ||||||||||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 537 GGCGCCAAAGCGGTTAAGGCAGCTAATACTTTGACGGTTGATCAATATTTCTCCGGTGGT 596
Query 597 AGTTCTACTTCTAAAGTGAGAGAAGCTTCGAGTAACATGTCAGGTCCGGGCCCAACATAC 656
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 AGCTCTACTTCTAAAGTGAGAGAAGCTTCGAGTAACATGTCAGGTCCGGGCCCAACATAC 656
Query 657 GAGTACACAACTACGGCAACTGCTAATAGTGAAACGTCGTCGTTTAGTGGGGACCAACCT 716
||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 657 GAGTATACAACTACGGCAACTGCTAGTAGCGAAACGTCGTCGTTTAGTGGGGACCAACCT 716
Query 717 CGGAGAAGATACAGAGGAGTTAGACAAAGACCTTGGGGAAAGTGGGCAGCTGAGATTCGA 776
||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 717 CGGCGAAGATACAGAGGAGTTAGACAAAGACCATGGGGAAAGTGGGCGGCTGAGATTCGA 776
Query 777 GATCCGTTCAAAGCAGCTAGAGTTTGGCTGGGTACGTTCGACAATGCTGAATCAGCAGCA 836
||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 777 GATCCATTTAAAGCAGCTAGAGTTTGGCTCGGTACGTTCGACAATGCTGAATCAGCAGCA 836
Query 837 AGAGCTTACGACGAAGCTGCACTTCGGTTTAGAGGCAACAAAGCCAAACTCAACTTCCCT 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 AGAGCTTACGACGAAGCTGCACTTCGGTTTAGAGGCAACAAAGCCAAACTCAACTTCCCT 896
Query 897 GAAAACGTCAAACTCGTTAGACCTGCTTCAACCGAAGCACAACCTGTGCCCCAAACCGCT 956
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 897 GAAAACGTCAAACTCGTTAGACCTGCTTCAACCGAAGCACAACCTGTGCACCAAACCGCT 956
Query 957 GCTCAAAGACCGACCCAGTTAAGGAACTCGGGTTCTACAACTACCCTTTTGCCCATACTA 1016
||||||||||||||||||| ||||||||||||||| || |||||||||||||||||| |
Sbjct 957 GCTCAAAGACCGACCCAGTCAAGGAACTCGGGTTCAACGACTACCCTTTTGCCCATAAGA 1016
Query 1017 CCTGCTTCAAATCAAACCGTTCATTCGCAGCCGCTGATGCAATCGTACAACTTGAGTTAC 1076
|||||||| ||||||| |||||||||||||||| |||||||||| |||||||||||||||
Sbjct 1017 CCTGCTTCGAATCAAAGCGTTCATTCGCAGCCGTTGATGCAATCATACAACTTGAGTTAC 1076
Query 1077 TCTGAAATGGCTCGTCAACAACAACAGTTTCAGCAATATCATCAACAATCTATGGATTCA 1136
|||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct 1077 TCTGAAATGGCTCGTCAACAACAACAGTTTCAGCAACATCATCAACAATCTTTGGATTTA 1136
Query 1137 TATGATCAAATGTCGTTTCCGTTGCGTTTCGGTCACACCGGAGATTCAATGATGCAATCT 1196
|| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1137 TACGATCAAATGTCGTTTCCGTTGCGTTTCGGTCACACTGGAGGTTCAATGATGCAATCT 1196
Query 1197 ACGTCGTCATCATCATCTCATTCTCGTCCTCTGTTTTCCCCGGCTGCTGTTCAGCCGCCG 1256
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 ACGTCGTCATCATCATCTCATTCTCGTCCTCTGTTTTCCCCGGCTGCTGTTCAGCCGCCA 1256
Query 1257 CCAGAATCAGCTAGCGAAACCGGTTACCTCCAGGATATACAATGGCCATCAGACAAGACA 1316
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1257 CCAGAATCAGCTAGCGAAACCGGTTATCTCCAGGATATACAATGGCCATCAGACAAGACT 1316
Query 1317 AGTAATAACTACAATAATAGTCCATCCTCCTGATGACTTGCTTCAttttttttttATTTG 1376
||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1317 AGTAATAACTACAATAATAGTCCATCCTCCTGATGACTTGCTTCATTTT------ATTTG 1370
Query 1377 TTTCACTATAGAGTAATAGGGGGA-A--AAAACGATTATATGTTATAGGGTTACTTTTCC 1433
||||||||||||||||||| | | |||| ||||||||||||||| |||| ||||||
Sbjct 1371 TTTCACTATAGAGTAATAGAAA-ACAGGAAAATGATTATATGTTATAGAGTTATTTTTCC 1429
Query 1434 CCAAATATTATAGGGTTTAGGTT 1456
|||||||||||||||||||||
Sbjct 1430 --AAATATTATAGGGTTTAGGTT 1450
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71786779350
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5