BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496691
Length=1378
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64760.1 | Symbols: RPN5B | regulatory particle non-ATPase s... 2218 0.0
AT5G09900.3 | Symbols: EMB2107, RPN5A, MSA | 26S proteasome reg... 1448 0.0
> AT5G64760.1 | Symbols: RPN5B | regulatory particle non-ATPase
subunit 5B | chr5:25893780-25896582 REVERSE LENGTH=1713
Length=1713
Score = 2218 bits (1201), Expect = 0.0
Identities = 1320/1379 (96%), Gaps = 2/1379 (0%)
Strand=Plus/Plus
Query 1 CGGAGTATTGATTCCCGGCGTTTAGCAATGGAAGAAAGTAAACAACTCGAATCGTCGATT 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 111 CGGAGTATTGATTCCCGGCGTTTAGCAATGGAAGAAAGTAGACAACTCGAATCGTCGATT 170
Query 61 GATAGGCTTCTGAACGAAGAGAAGCAGATGAGGCTCGCGGAAAATGTCGCCGGAACTAGA 120
||| |||| |||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 171 GATCGGCTGCTGAACGAAGAGAAACAGATGAGGCTCGCAGAAAATGTCGCCGGAACTAGA 230
Query 121 AAAGCAGCTACCGAGATTCTGAAGCTTTGTTTCGAAGCTAAGGATTGGAAACTTCTCAAC 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 231 AAAGCAGCTACCGAGATTCTTAAGCTTTGTTTCGAAGCTAAGGATTGGAAACTTCTCAAC 290
Query 181 GAACAGATTTTGAATCTCTCCAAGAAACGTGGTCAGCTTAAGCAGGCTGTACAATCCATG 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 291 GAACAGATTTTGAATCTCTCGAAGAAACGTGGTCAGCTTAAGCAGGCTGTACAATCCATG 350
Query 241 GTGCAACAAGCAATGCAGTATATTGATCAGACACCGGATATCGAAACTCGGGTTGAGCTT 300
|||||||||||||||||||||||||||||||||| || || ||||||||| ||||||||
Sbjct 351 GTGCAACAAGCAATGCAGTATATTGATCAGACACTAGACATAGAAACTCGGATTGAGCTT 410
Query 301 ATTAAGACCT-TACTCAACGTATCTGCTGGAAAGATATATGTCGAAATCGAGAGAGCTCG 359
||||||| || || ||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 411 ATTAAGA-CTCTAAACAATGTAGCTGCTGGAAAGATATATGTCGAAATCGAGAGAGCTCG 469
Query 360 TTTGACCAAGAAGCTTGCTAAGATTAAGGAAGAACAAGGTTTGATTGCTGAAGCTGCAGA 419
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 470 TTTGACCAAGATGCTTGCTAAGATTAAGGAAGAACAAGGTTTGATTGCTGAAGCTGCGGA 529
Query 420 TCTTATGCAAGAAGTTGCTGTGGAGACATTTGGTGCCATGGCAAAAACTGAGAAAATTGC 479
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 530 TCTCATGCAAGAAGTTGCTGTGGAGACATTTGGTGCTATGGCAAAAACTGAGAAAATTGC 589
Query 480 TTTCATCCTTGAACAAGTCCGCTTGTGTTTGGATCGACGAGATTTTGTCCGTGCACAAAT 539
|||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 590 TTTCATTCTTGAACAAGTCCGCTTGTGTTTGGATCAAAAAGATTTTGTCCGTGCACAAAT 649
Query 540 TTTATCTAGGAAGATCAACCCAAGAGTGTTTGATGCAGACACCAAGAAAGAGAAAAAGAA 599
||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||
Sbjct 650 TTTATCTAGGAAGATCAACCCAAGAGTGTTTGATGCAGATACCACGAAGGAGAAAAAGAA 709
Query 600 ACCTAAGGAAGGTGATAACATGGTAGAGGAGGCTCCAGCTGATATACCAACATTGTTGGA 659
|||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 710 GCCTAAGGAAGGTGAAAACATGGTAGAGGAGGCTCCGGCTGATATACCTACATTGTTGGT 769
Query 660 GCTAAAGCGAATTTACTATGAGCTCATGATTCGGTATTATTCTCACAACAATGAGTACAT 719
|||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 770 GCTAAAACGGATTTACTATGAGCTAATGATTCGGTATTATTCTCACAACAATGAGTACAT 829
Query 720 TGAGATATGCCGTAGCTACAAGGCGATATATGATATTCCTTCGGTAAAGGAAAACCCAGA 779
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 830 TGAGATATGCCGTAGCTACAAGGCGATATATGATATCCCTTCTGTAAAGGAAAACCCAGA 889
Query 780 ACAATGGATTCCAGTCCTGAGGAAGATCTGCTGGTTTTTGGCCTTGGCACCACATGATCC 839
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 890 ACAATGGATTCCAGTCCTGAGAAAGATTTGCTGGTTTTTGGCCTTGGCACCACATGATCC 949
Query 840 GATGCAATCGAGCCTGCTTAATGCAACCTTAGAAGATAAAAAATTATCAGAGATTCCTGA 899
|||||||||||||| || ||||||||||| ||||||||||| |||||||||||||||||
Sbjct 950 AATGCAATCGAGCCTACTCAATGCAACCTTGGAAGATAAAAAGTTATCAGAGATTCCTGA 1009
Query 900 TTTCAAGATGCTTCTAAAACAGATTGTTACAATGGAGGTGATTCAGTGGACATCTCTCTG 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 TTTCAAGATGCTTCTAAAACAGATTGTTACAATGGAGGTGATTCAGTGGACATCTCTCTG 1069
Query 960 GAATAAATACAAGGACGAATTTGAGAGTGAGAAAAACATGATTGGAGGCTCTTTGGGTGA 1019
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 1070 GAATAAATACAAGGACGAGTTTGAGAATGAGAAAAACATGATTGGAGGCTCTTTGGGTGA 1129
Query 1020 CAAAGCTGGTGAAGATCTCAAACTAAGAATAATCGAACACAATATTCTCGTCGTCTCAAA 1079
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1130 CAAAGCTGGTGAAGATCTCAAACTAAGAATAATCGAACACAATATTCTCGTTGTCTCAAA 1189
Query 1080 GTATTATTCAAGGATTACCTTAAAGAGACTTGCAGAACTTTTATGCCTAACCACTGAGGA 1139
||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1190 GTACTACTCAAGGATTACCTTTAAGAGACTTGCAGAACTTTTATGCCTAACCACTGAGGA 1249
Query 1140 AGCAGAGAAGCATCTATCTGAAATGGTTGTGTCCAAAGCCTTGATAGCAAAAATCGACAG 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1250 AGCAGAGAAGCATCTATCTGAAATGGTTGTGTCCAAAGCCTTGATAGCAAAAATCGACAG 1309
Query 1200 ACCATCCGGAATAATCTGCTTCCAGATTGTTAAAGACAGCAACGAAATTCTCAACTCGTG 1259
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1310 ACCATCAGGAATAATCTGCTTCCAGATTGTTAAAGACAGCAACGAAATCCTCAACTCGTG 1369
Query 1260 GGCAACAAACTTGGAGAAGCTTTTGGATCTTGTTGAAAAGAGTTGTCACCAGATTCACAA 1319
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1370 GGCAACAAACTTGGAGAAGCTTTTGGATCTTGTTGAAAAGAGTTGTCACCAAATTCACAA 1429
Query 1320 AGAAACAATGGTTCATAAAGCTGCACTAAGAGCTTGAGAAGCCTGTTTAGCCACACACA 1378
|||||||||||||||||||| ||||||||||||||||||| || || ||||||||||||
Sbjct 1430 AGAAACAATGGTTCATAAAGTTGCACTAAGAGCTTGAGAACCCGGTCTAGCCACACACA 1488
> AT5G09900.3 | Symbols: EMB2107, RPN5A, MSA | 26S proteasome regulatory
subunit, putative (RPN5) | chr5:3089278-3092595 REVERSE
LENGTH=1678
Length=1678
Score = 1448 bits (784), Expect = 0.0
Identities = 1140/1313 (87%), Gaps = 20/1313 (2%)
Strand=Plus/Plus
Query 56 CGATTGATAGGCTTCTGAACGAAGAGAAGCAGATGAGGCTCGCGGAAAATGTCGCCGGAA 115
|||| ||| |||||||||| ||||||||||||||||| ||||| ||||| || ||||| |
Sbjct 190 CGATAGATCGGCTTCTGAATGAAGAGAAGCAGATGAGACTCGCCGAAAACGTAGCCGGTA 249
Query 116 CTAGAAAAGCAGCTACCGAGATTCTGAAGCTTTGTTTCGAAGCTAAGGATTGGAAACTTC 175
| || ||||| || || |||||||| ||||||||||||| |||||||||||||||||||
Sbjct 250 CAAGGAAAGCCGCCACTGAGATTCTTCAGCTTTGTTTCGATGCTAAGGATTGGAAACTTC 309
Query 176 TCAACGAACAGATTTTGAATCTCTCCAAGAAACGTGGTCAGCTTAAGCAGGCTGTACAAT 235
| || || |||||| | |||||||| ||||||||||||||||| || |||||||| ||||
Sbjct 310 TGAATGAGCAGATTCTCAATCTCTCTAAGAAACGTGGTCAGCTCAAACAGGCTGTGCAAT 369
Query 236 CCATGGTGCAACAAGCAATGCAGTATATTGATCAGACACCGGATATCGAAACTCGGGTTG 295
|||||||||| ||||||||||||||||| ||||||||||| || || ||||||||| | |
Sbjct 370 CCATGGTGCAGCAAGCAATGCAGTATATCGATCAGACACCAGACATTGAAACTCGGATAG 429
Query 296 AGCTTATTAAGAC-CTTACTCAACGTATCTGCTGGAAAGATATATGTCGAAATCGAGAGA 354
||||||| ||||| || | ||| ||||||||||||||||||||||| |||||||||||
Sbjct 430 AGCTTATCAAGACGCTGA-ACAATGTATCTGCTGGAAAGATATATGTTGAAATCGAGAGG 488
Query 355 GCTCGTTTGACCAAGAAGCTTGCTAAGATTAAGGAAGAACAAGGTTTGATTGCTGAAGCT 414
|| ||| | |||||||| ||||||||||||||||||||||| ||| ||| |||||||||
Sbjct 489 GCACGTCTCACCAAGAAACTTGCTAAGATTAAGGAAGAACAGGGTCAGATAGCTGAAGCT 548
Query 415 GCAGATCTTATGCAAGAAGTTGCTGTGGAGACATTTGGTGCCATGGCAAAAACTGAGAAA 474
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 549 GCAGATCTTATGCAAGAAGTTGCTGTGGAGACATTTGGTGCTATGGCAAAAACTGAGAAA 608
Query 475 ATTGC-TTTCATCCTTGAACAAGTCCGCTTGTGTTTGGATCGACGAGATTTTGTCCGTGC 533
||||| ||| |||||||||||||| |||||||| |||||||| | ||||||||| |||||
Sbjct 609 ATTGCATTT-ATCCTTGAACAAGTTCGCTTGTGCTTGGATCGTCAAGATTTTGTTCGTGC 667
Query 534 ACAAATTTTATCTAGGAAGATCAACCCAAGAGTGTTTGATGCAGACACCAAGAAAGAGAA 593
|||||| ||||||||||||||||| || ||||| ||||| ||||| || || ||||| ||
Sbjct 668 ACAAATCTTATCTAGGAAGATCAATCCTAGAGTTTTTGACGCAGATACAAAAAAAGATAA 727
Query 594 AAAGAAACCTAAGGAAGGTGATAACATGGTAGAGGAGGCTCCAGCTGATATACCAACA-T 652
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
Sbjct 728 GAAGAAACCTAAGGAAGGTGATAACATGGTAGAAGAGGCTCCTGCTGATATACCAACCCT 787
Query 653 TGTTGGAGCTAAAGCGAATTTACTATGAGCTCATGATTCGGTATTATTCTCACAACAATG 712
| |||||||| |||||||||||||| ||||| ||||||||||| |||||||| |||||||
Sbjct 788 T-TTGGAGCTTAAGCGAATTTACTACGAGCTTATGATTCGGTACTATTCTCATAACAATG 846
Query 713 AGTACATTGAGATATGCCGTAGCTACAAGGCGATATATGATATTCCTTCGGTAAAGGAAA 772
|||||||||| || ||||||||||||||||||||||||||||| ||||| ||||| ||||
Sbjct 847 AGTACATTGAAATCTGCCGTAGCTACAAGGCGATATATGATATCCCTTCAGTAAAAGAAA 906
Query 773 AC-CCAGAACAATGGATTCCAGTCCTGAGGAAGATCTGCTGGTTTTTGGCCTTGGCACCA 831
| || || || |||||||| ||||||||||||||||||||||| |||| |||||||||
Sbjct 907 -CTCCGGAGCAGTGGATTCCGGTCCTGAGGAAGATCTGCTGGTTCTTGGTCTTGGCACCT 965
Query 832 CATGATCCGATGCAATCGAGCCTGCTTAATGCAAC-CTTAGAAGATAAAAAATTATCAGA 890
||||| || |||||||| ||| |||| |||||||| || ||||| || || ||||||||
Sbjct 966 CATGACCCAATGCAATCAAGCTTGCTCAATGCAACTCTG-GAAGACAAGAATTTATCAGA 1024
Query 891 GATTCCTGATTTCAAGATGCTTCTAAAACAGATTGTTACAATGGAGGTGATTCAGTGGAC 950
|| ||||||||||||||||||||||||||| | || ||||||||||| ||||| |||||
Sbjct 1025 AATCCCTGATTTCAAGATGCTTCTAAAACAGGTAGTGACAATGGAGGTTATTCAATGGAC 1084
Query 951 ATCTCTCTGGAATAAATACAAGGACGAATTTGAGAGTGAGAAAAACATGATTGGAGGCTC 1010
|||||| ||||| ||||||||||| || || |||| ||||||| |||||||||||| ||
Sbjct 1085 ATCTCTGTGGAACAAATACAAGGATGAGTTCGAGAAAGAGAAAAGCATGATTGGAGGTTC 1144
Query 1011 TTTGGGTGACAAAGCTGGTGAAGATCTCAAACTAAGAATAATCGAACAC--AATAT-TC- 1066
||||||||||||||||||||||||||| ||||| ||||| |||||||| || || ||
Sbjct 1145 TTTGGGTGACAAAGCTGGTGAAGATCTGAAACTGAGAATCATCGAACATGTAAAATATCC 1204
Query 1067 TCGTCGTCTCAAAGTATTATTCAAGGATTACCTTAAAGAGACTTGCAGAACTTTTATGCC 1126
|||| ||||||||||| || ||||||| ||||||||||||||||| || ||||||||||
Sbjct 1205 TCGTTGTCTCAAAGTACTACGCAAGGATAACCTTAAAGAGACTTGCCGAGCTTTTATGCC 1264
Query 1127 TAACCACTG-AGGAAGCAGAGAAGCATCTATCTGAAATGGTTGTGTCCAAAGC-CTTGAT 1184
| | || || |||| || |||||||||||||| || ||||| ||||| ||||| || |||
Sbjct 1265 TGAGCA-TGGAGGAGGCGGAGAAGCATCTATCGGAGATGGTAGTGTCAAAAGCACT-GAT 1322
Query 1185 AGCAAAAATCGACAGACCATCCGGAATAATCTGCTTCCAGATTGTTAAAG-ACAGCAACG 1243
|||||||| ||||||||||| ||||| | ||||||||||| | |||| |||||||||
Sbjct 1323 TGCAAAAATAGACAGACCATCTGGAATTGTGTGCTTCCAGATCGC-AAAGGACAGCAACG 1381
Query 1244 AAATTCTCAACTCGTGGGCAACAAACTTGGAGAAGCTTTTGGATCTTGTTGAAAAGAGTT 1303
| ||||| |||||||||||| || |||||||||||| | |||||||| ||||||||||
Sbjct 1382 AGATTCTAAACTCGTGGGCAGGGAATTTGGAGAAGCTTCTAGATCTTGTGGAAAAGAGTT 1441
Query 1304 GTCACCAGATTCACAAAGAAACAATGGTTCATAAAGCTGCACTAAGAGCTTGA 1356
| ||||| |||||||| ||||| |||||||| ||||| || || ||| |||||
Sbjct 1442 GCCACCAAATTCACAAGGAAACCATGGTTCACAAAGCCGCTCTCAGACCTTGA 1494
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67871136840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5