BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496693
Length=590
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64770.1 | Symbols: RGF9 | Encodes a root meristem growth fa... 798 0.0
> AT5G64770.1 | Symbols: RGF9 | Encodes a root meristem growth
factor (RGF). Belongs to a family of functionally redundant
homologous peptides that are secreted, tyrosine-sulfated, and
expressed mainly in the stem cell area and the innermost
layer of central columella cells. RGFs are required for maintenance
of the root stem cell niche and transit amplifying cell
proliferation. Members of this family include: At5g60810
(RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4),
At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830
(RGF8) and At5g64770 (RGF9). | chr5:25897367-25898124
REVERSE LENGTH=593
Length=593
Score = 798 bits (432), Expect = 0.0
Identities = 542/593 (91%), Gaps = 16/593 (3%)
Strand=Plus/Plus
Query 1 TATATAACCAAAGaaaaaaaaaTCTCTTCCAAAAATGGCAATTAGGGTTTCCTACAAGTC 60
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 6 TATATAACCAAAGAAAAAAAACTCTCTTCCAAAAATGGCAATTAGGGTTTCCCACAAGTC 65
Query 61 TTTCCTCGCCGCAGTTCTTCTCATACTCTTCATTTGTTCTCCTACTCAAGCACGAAGCTT 120
|||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 66 TTTCCTCGTCGCACTTCTTCTCATACTCTTCATTTCCTCTCCTACTCAAGCACGAAGCTT 125
Query 121 ACGAGAAATCGTGAGGAATAGAACGCTATTGGTTGTGGAGAAGGGTCAAGCGAGTCGGAA 180
||||||| | || |||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 126 ACGAGAAGTAGTAAGGAATAGAACGCTATTGGTTGTGGAGAAGAGTCAAGAGAGTCGGAA 185
Query 181 AATAAGGCACGAAGGTGGAGGAAGTGATGTTGATGGATTGGTGGATATGGATTATAATTC 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 186 AATAAGGCACGAAGGTGGAGGAAGTGATGTTGATGGATTGATGGATATGGATTATAATTC 245
Query 241 TGCGAACAAGAAAAGACCAATACACAATCGCTAATAAACACACATGAGAGCTTATCGAAT 300
|||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||
Sbjct 246 TGCGAACAAGAAAAGACCGATACACAATCGCTAATAAACACACATGA-A-CTTATCGAAT 303
Query 301 TCTTGTGAGATATCCTGAGATCCAAAGATATCCCGAGATTTTATCTTTTACGAAACATAA 360
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 304 TCTTGTGAGATATCCTGAGATCCAAAGATATCCCGAGATTTTATCTTTTACTAAACATAA 363
Query 361 ATTATAAGAAGTGAGAATGTATTATATATTTaaaaaaaaaaaaaaaaGTGAGAATGTAAA 420
||||||||||||||||||||||| ||||| || |||| || |||||||||||||
Sbjct 364 ATTATAAGAAGTGAGAATGTATTTTATAT--AAGAAAAGAA------GTGAGAATGTAAA 415
Query 421 ATA--AT-ATTTATATGAACATATAAATATAGACGACTTTGTATGCATATGTGTACAGTC 477
|| || ||||||| ||||||||||||||| |||||||||||||||| |||||||||
Sbjct 416 CTATTATTATTTATAGGAACATATAAATATAAACGACTTTGTATGCAT--GTGTACAGTA 473
Query 478 TTATCTCGAGAAAAAACCGTTTTATATAATAATCATAGCTTGTGTGTGTTTTATGTAGAG 537
|||||||||| ||||| ||| |||| ||||||||||||||||||||| | | || |
Sbjct 474 TTATCTCGAGGGAAAACAGTTCTATACAATAATCATAGCTTGTGTGTGCTAGCTTTAT-G 532
Query 538 TATGGATTGCATCATGGTTTTCTGTTTGTGAAATAAAGGTCAATAATATATTA 590
||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 533 TATGGATTGCATCATGGTTTTCTGTTTGTGAAATAAAACTCTATAATATATTA 585
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28382293055
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5