BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496694
Length=773
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64780.1 | Symbols: | Uncharacterised conserved protein UCP... 946 0.0
> AT5G64780.1 | Symbols: | Uncharacterised conserved protein UCP009193
| chr5:25900559-25902127 REVERSE LENGTH=841
Length=841
Score = 946 bits (512), Expect = 0.0
Identities = 640/697 (92%), Gaps = 27/697 (4%)
Strand=Plus/Plus
Query 102 TAGGGTTTGT--GATTCGTTCGGACTCTAATGGTGAAGAAGCGAAAATCCGAGGCCACGC 159
|||||||||| ||||||||||||||||||||| |||||| |||||||||||||| ||||
Sbjct 144 TAGGGTTTGTGAGATTCGTTCGGACTCTAATGGGGAAGAAACGAAAATCCGAGGCTACGC 203
Query 160 GGCTCGATGAGGTTGATCGAACCATGTATGGTGCGTTTCGAGGTGCTGCTAATTCGCTCT 219
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 204 GGCTCGATGAGGTTGATCGAACCATGTATGGCGCGTTTCGAGGCGCTGCTAATTCGCTCT 263
Query 220 CTCAGCTCTATACTCATGCCATGAATCACCAAAACGTCTCTTTCCTCGCCGGTGAACGTC 279
| ||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 264 CGCAGCTCTATACACATGCCATGAATCACCAACGCGTTTCTTTCCTCGCCGGTGAACGTC 323
Query 280 GCGGCATGGAGAAACTTTACCAATGGATTGTGAGACAAGAAGAACAAGGAACTAGAGTAT 339
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 324 GCGGAATGGAGAAGCTTTACCAATGGATTGTGAGACAAGAAGAACAAGGAACTAGAGTAT 383
Query 340 CCACAGTTGATATTACTACCTACTTGCAGAATGCGCTTGAATATGAACCTGAGGAGACGT 399
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 384 CCACAGCTGATATTACTACCTACTTACAGAATGCGCTTGAATATGAACCTGAGGAGACGT 443
Query 400 CAATACCACTCCCCATGCAAGAGTTTCATCAGCACCAATTCGCTCCACCAAACGTAAATA 459
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 444 CGATACCACTCCCCATGCAAGAGTTTTATCAGCACCAATTCGCTCCACCAAACGTAAATA 503
Query 460 CTTCAGTAGCTCATGTTCCTTCAAGTCATATA--AC-ACAACAATACTATGATTGTAACC 516
| |||||||||||||||||||||||||| ||| || ||||||| | |||||||||||||
Sbjct 504 CATCAGTAGCTCATGTTCCTTCAAGTCACATAGCACAACAACAACATTATGATTGTAACC 563
Query 517 AAGAGAAAGTCTTGATTCCACCAAATGGTCTCTCAAGTCCGGTTCGAAGAACCCTTCAGG 576
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 564 AAGAGAAACTCTTGATTCCACCAAATGGTCTCTCAAGTCCGGTTCGAAGAACCCTTCAGG 623
Query 577 AATTCAACTTGTGTGAGGCTGAGTCTGGTAATAAC--C-ACAATCCAAACTCTACAGGTG 633
| |||||||||||||||||||||||||||||||| | ||||||| |||||||||||||
Sbjct 624 ACTTCAACTTGTGTGAGGCTGAGTCTGGTAATAATAACTACAATCCCAACTCTACAGGTG 683
Query 634 AAGACTTATCTTACTGAA-AAAATCTTATTTCATTTGCC-AAA--T------CAT---TC 680
|| ||||||||||||||| |||||||| ||||||||||| ||| | ||| ||
Sbjct 684 AACACTTATCTTACTGAATAAAATCTTGTTTCATTTGCCGAAAGATGAAAAACATAAATC 743
Query 681 ---C-ATTGTAAAGTCTCAATTGTTTCTGTGGTAAAGTACTGTCTCATGTAATACACAAA 736
| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 744 ATTCCATTGTAAAGTCTCAATTGTTT--GTGGTAAAGTATTGTCTCATGTAATACACAAA 801
Query 737 ACACTTTTTCCTAATCTTGCAAAGAAATTGGATGAAT 773
|||||||||||||||||| ||||||| |||||||||
Sbjct 802 ACACTTTTTCCTAATCTTTCAAAGAAGCTGGATGAAT 838
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37575141956
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5