BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496695
Length=1604
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64790.1 | Symbols: | O-Glycosyl hydrolases family 17 prote... 2518 0.0
> AT5G64790.1 | Symbols: | O-Glycosyl hydrolases family 17 protein
| chr5:25902641-25904701 FORWARD LENGTH=1672
Length=1672
Score = 2518 bits (1363), Expect = 0.0
Identities = 1475/1529 (96%), Gaps = 7/1529 (0%)
Strand=Plus/Plus
Query 1 AAACATAGCTTCGAGATCAAACAAGCCCTAATTTATCATTCATCGTCGCCTTCTC---A- 56
||||| | |||||||||||||||| |||||| ||||||| ||||||||||||||| |
Sbjct 12 AAACACATCTTCGAGATCAAACAAACCCTAA-TTATCATCCATCGTCGCCTTCTCAATAT 70
Query 57 ATATGGCCGGAAGAGCAGCGATGCTCGTTAACGTCGGGACGGTTATAATGACCGTTTTGA 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 71 ATATGGCCGGAAGAGCAGCGATGCTCGTTAACGTCGGGACGGTTATAATGACCGTTTTGA 130
Query 117 CCCTGGCTAGTTTGGTCGGAGGCTTCGGTGTCAATTGGGGCAATATCGCATCGCATCCGT 176
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 131 CCCTGGCTAGTTTGGTCGGAGGCTTCGGTGTGAATTGGGGCAATATCGCATCACATCCGT 190
Query 177 TGAATCCCAACATTGTTGTTCAGATGCTCAAGGACAATAAGATCAATAAAGTGAAGCTTT 236
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 191 TGAATCCCAACATTGTTGTTCAGATGCTTAAGGACAATAAGATCAATAAAGTGAAGCTTT 250
Query 237 TTGACGCTGATTCATGGACGATGAATGCTTTGGCCGGTACGGGCATGGAGGTTATGGTTG 296
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 251 TTGACGCTGATTCATGGACGATGAATGCTTTGGCTGGTACGGGCATGGAGGTTATGGTTG 310
Query 297 GAATTCCTAATAACCTTCTTGAAACTCTCGCTGATGATTACGATAATGCTAAAGATTGGG 356
|||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 311 GAATCCCTAATAACCTTCTTGAGTCTCTCGCAGATGATTACGATAATGCTAAAGATTGGG 370
Query 357 TTAAAGAAAACGTGACCCAGTATATGCGTAAGGGGGGCGTCGACATCAAGTACGTAGCCG 416
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 371 TTAAAGAAAACGTGACCCAGTATATTCGTAAGGGTGGCGTCGACATCAAGTACGTAGCCG 430
Query 417 TGGGGAACGAGCCATTTTTGTCTGCATACAACGGATCGTTCTTGAAGACAACATTTCCAG 476
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 TGGGGAACGAGCCGTTTTTGTCTGCATACAACGGATCGTTCTTGAAGACAACATTTCCAG 490
Query 477 CGCTAAAGAACATTCACAGGGCGTTAAAAGAAGCTGGACACACCGATA-AGATGAAAGCC 535
|| ||||||||||||||| ||||||||||||||||||||||||| ||| | |||||||||
Sbjct 491 CGTTAAAGAACATTCACAAGGCGTTAAAAGAAGCTGGACACACCAATATA-ATGAAAGCC 549
Query 536 ACGATCCCACAAAACGCAGAAGTTTACCAATCAGCAAACGACAAGCCATCAGAAGGTGAT 595
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 550 ACGATCCCACAAAACGCAGAAGTTTACCAATCAGCCAACGACAAGCCATCAGAAGGTGAT 609
Query 596 TTCCGCAAGGATGTGAAGCAAACGATGCTTGACATCGTCAATTTCTTCCACGATAATGAC 655
|||||||||||||| || |||||||||||||| |||||||||||||||||||| || |||
Sbjct 610 TTCCGCAAGGATGTCAAACAAACGATGCTTGATATCGTCAATTTCTTCCACGAAAACGAC 669
Query 656 TTACCTTTCACCGTCAACATTTACCCTTTCCTTAGTCTTTACCTAAACGAGCATTTCCCC 715
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 670 TTACCTTTCACCGTCAACATTTACCCTTTCCTTAGTCTTTACCTAAACGAGCATTTTCCC 729
Query 716 GTTGAATTTGCTTTTCTTGACGGTAATGGTCAGACAATGACTGATAAAGGAAAGAATTAT 775
||||| || ||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 730 GTTGAGTTCGCTTTTCTTGACGGTGATGGTCAGACAATGACTGACAAAGGAAAGAATTAT 789
Query 776 GATAACGTGTTCGATGCCAATTACGACACACTCGTTTACGCGTTGAAGAAAGCTGGGATT 835
||||||||||| || ||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 790 GATAACGTGTTTGACGCCAATTACGACACACTTGTTTACGCGTTGAAGAAGGCTGGGATT 849
Query 836 CACGATATGAAGATTATCGTTGGAGAGGTTGGATGGCCAACGGATGGTCACAAATATGCA 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 CACGATATGAAGATTATCGTTGGAGAGGTTGGATGGCCAACGGATGGTCACAAATATGCA 909
Query 896 ACCCCGAAGCTAGCGGAGAAATTCTATGCAGGGCTTATGAAAAGACTTGCTAAGGACGGT 955
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 TCGCCGAAGCTAGCGGAGAAATTCTATGCAGGGCTTATGAAAAGACTTGCTAAGGACGGT 969
Query 956 GGGACTCCAACGAGGCCTGAAAGATTAGAGGTCTATCTCTTCGGTTTCCTCGACGAAGAC 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 970 GGGACTCCAACGAGGCCTGAAAGATTAGAGGTCTATCTCTTCGGTTTCCTCGACGAAGAC 1029
Query 1016 ATGAAGAGTATTCTTCCTGGGCCCTTTGAGAGACATTGGGGAATCTTTAGATACGATGGG 1075
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1030 ATGAAGAGTATTCTTCCAGGGCCTTTTGAGAGACATTGGGGAATCTTTAGATACGATGGG 1089
Query 1076 ACACCGAAGTTTATGCTAGATTTCACCGGACAAGGACGCCAAATGGTGCCCGTTGCAGCT 1135
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1090 ACACCAAAGTTTATGCTAGATTTCACGGGACAAGGACGCCAAATGGTGCCCGTTGCAGCT 1149
Query 1136 AAAGGTGTGCAATACTTGGAAAAACAATGGTGCGTAGTGAACAACGACACAGTAAATCTA 1195
||||||||||| |||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 1150 AAAGGTGTGCAGTACTTGGAAAAACAATGGTGCGTAGTGAACAAAGACACGGTCAATCTA 1209
Query 1196 GACGAAGTTGGTCCTGATCTAGACTATGCGTGTTACCACGGGGACTGCACCGCGATGGAG 1255
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1210 GACGAAGTTGGTCCTGATCTAGACTATGCGTGTTACCACGGGGACTGCACCGCGATGGAA 1269
Query 1256 GCCGGGTCAACGTGTAGTAAGCTAACCAAAGTCCAAAACATATCATACGCATTTAACATG 1315
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1270 GCCGGGTCAACTTGTAGTAAGCTAACCAAAGTCCAAAACATATCATACGCATTTAACATG 1329
Query 1316 TATTTCCAGATACAAGACCAAGACGTTAGGGCTTGCGATTTCAAAGGAGCTGCAATGATC 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1330 TATTTCCAGATACAAGACCAAGACGTTAGGGCTTGCGATTTCAAAGGAGCTGCAATGATC 1389
Query 1376 ACCAAGGTCAATGCATCCGTGGGAAGTTGCTTGTTCCCTGTTCAGATTGTTAGTGGAAGT 1435
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1390 ACCAAGGTCAATGCATCCGTGGGAAGTTGCTTGTTCCCTGTTCAGATCGTTAGTGGAAGT 1449
Query 1436 GATGATTTCAGGATCAACTTTGTGTTCGGAAGATTTGTCGTCTTTGGACTTGTTCTTCTT 1495
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1450 GATGATTTCAGGATCAACTTTGTGTTCGGAAGATTCGTCGTCTTTGGACTTGTTCTTCTT 1509
Query 1496 GGATTGCTCACGGTTATATAATTTGTTTT 1524
|||||||||||||||||||||||||||||
Sbjct 1510 GGATTGCTCACGGTTATATAATTTGTTTT 1538
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79216460010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5