BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg496696

Length=321
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G64800.1 | Symbols: CLE21 | CLAVATA3/ESR-RELATED 21 | chr5:2...   483    6e-136


> AT5G64800.1 | Symbols: CLE21 | CLAVATA3/ESR-RELATED 21 | chr5:25906083-25906403 
FORWARD LENGTH=321
Length=321

 Score =  483 bits (261),  Expect = 6e-136
 Identities = 302/322 (94%), Gaps = 2/322 (1%)
 Strand=Plus/Plus

Query  1    ATGTTAATTTTATATTCACGATATGCAATGAAACGAGATGTTGTAATCATTTTAATCTTT  60
            ||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct  1    ATGTTAATTTTATCTTCACGATATGCAATGAAACGAGATGTTTTAATCATTGTAATCTTT  60

Query  61   ACACTGTTAGTTTTGATCATTATCTCCCGTTCAAGTTCGATCCAAGCTGGAAGATTCATG  120
            ||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   ACAGTGTTAGTATTAATCATTATCTCCCGTTCAAGTTCGATCCAAGCTGGAAGATTCATG  120

Query  121  ACTACAAGAAGAAAGCAAAATTTGAGCGTTGCTCGATCACTATACTACAAGAATCATCAC  180
            |||||| ||||||| |  ||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  ACTACAGGAAGAAATCGTAATTTGAGCGTTGCTCGATCACTATACTACAAGAATCATCAC  180

Query  181  AAGTTTGTGATCACGGAGATGTCCAGTTTTAATAAAGTCAGACGAAGATCGTCTAAAGTT  240
            ||| ||||||||||||||||||| | |||||||||||| |||||||||||||||| | ||
Sbjct  181  AAGGTTGTGATCACGGAGATGTCAAATTTTAATAAAGTTAGACGAAGATCGTCTAGATTT  240

Query  241  CGGAGAAAGATCG-ACGGCGACGAGGAAGAAGAAGAGAAGCGATCTATCCCCACCGGTCC  299
            |||||||||| || ||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct  241  CGGAGAAAGA-CGGACGGCGACGAGGAAGAAGAAGAGAAACGATCTATCCCCACAGGTCC  299

Query  300  AAATCCTTTGCACAACAAGTAG  321
            ||||||||||||||||||||||
Sbjct  300  AAATCCTTTGCACAACAAGTAG  321



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14929521453


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5