BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496697
Length=681
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64810.1 | Symbols: WRKY51, ATWRKY51 | WRKY DNA-binding prot... 1075 0.0
> AT5G64810.1 | Symbols: WRKY51, ATWRKY51 | WRKY DNA-binding protein
51 | chr5:25908413-25909803 FORWARD LENGTH=703
Length=703
Score = 1075 bits (582), Expect = 0.0
Identities = 652/685 (95%), Gaps = 8/685 (1%)
Strand=Plus/Plus
Query 1 AAATGAATATCTCTCAAAACCCTAGCCCTAATTTCACGTACTTCTCGGATGAAAACTTTA 60
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1 AAATGAATATCTCTCAAAACCCTAGCCCTAATTTTACGTACTTCTCCGATGAAAACTTTA 60
Query 61 TCAATCCGTTTATGGATAACAATGATTTCTCAAATTTGATGTTCTTCGACGTCGATGAAG 120
| |||||||||||||||||||| ||||||||||||||||||||||| ||| | |||||||
Sbjct 61 TTAATCCGTTTATGGATAACAACGATTTCTCAAATTTGATGTTCTTTGACATAGATGAAG 120
Query 121 GA-GTCAGCAATGGATTAGTCGAGGAAGAGATTTCATCTCCGACAAGCATAGTTTCGTCG 179
|| || | |||||||||| ||||||||||||| ||||||||||||||||| |||||||||
Sbjct 121 GAGGT-AACAATGGATTAATCGAGGAAGAGATCTCATCTCCGACAAGCATCGTTTCGTCG 179
Query 180 GAGACATTTACCGGTGAAAGCGGCGGATCCGGCAGCGCAACAACGTTGAGTAAAAAGGAA 239
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GAGACATTTACCGGGGAAAGCGGCGGATCCGGCAGCGCAACAACGTTGAGTAAAAAGGAA 239
Query 240 TCAACTAATAGAGGAAGTAAAGAGAGTGATCAGACCAAGGAGACGGGTCATAGAGTTGCA 299
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 240 TCAACTAATAGAGGAAGTAAAGAGAGTGATCAGACGAAGGAGACGGGTCATCGAGTTGCA 299
Query 300 TTTAGAACGAGATCGAAGATTGATGTGATGGATGATGGTTTTAAATGGAGGAAGTATGGC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TTTAGAACGAGATCGAAGATTGATGTGATGGATGATGGTTTTAAATGGAGGAAGTATGGC 359
Query 360 AAGAAATCTGTCAAAAACAACATTAACAAGAGGAATTACTACAAATGCTCAAGTGAAGGT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 AAGAAATCTGTCAAAAACAACATTAACAAGAGGAATTACTACAAATGCTCAAGTGAAGGT 419
Query 420 TGCTCGGTGAAGAAGAGGGTAGAGAGAGATGGTGACGATGCAGCTTATGTAATTACAACA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TGCTCGGTGAAGAAGAGGGTAGAGAGAGATGGTGACGATGCAGCTTATGTAATTACAACA 479
Query 480 TATGAAGGAGTCCATAACCATGAGAGCCCCTCTCATGTCTATTACGATGACATGGTTTTG 539
|||||||||||||||||||||||||| | |||| ||||||||||| |||| ||||||||
Sbjct 480 TATGAAGGAGTCCATAACCATGAGAGTCTCTCTAATGTCTATTACAATGAAATGGTTTTA 539
Query 540 TCTTATGATCATGATAACTGGAACCAACACTCTCTTCTTCGATCTTAATCCAAATCTCTC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TCTTATGATCATGATAACTGGAACCAACACTCTCTTCTTCGATCTTAATCCAAATCTCTC 599
Query 600 ATCCTCCTTGAGATTGTAGGATACCAA-A-TATTA-TAATCTCAAATTCTCAATGCTTTG 656
|||||| ||||||||||| |||||||| | ||||| || | | || | ||||||||||||
Sbjct 600 ATCCTCGTTGAGATTGTAAGATACCAACAATATTAATATTAT-AA-T-CTCAATGCTTTG 656
Query 657 TATAATTTTATAGGTGTATAATAAA 681
|||||||| ||||||||||||||||
Sbjct 657 TATAATTTGATAGGTGTATAATAAA 681
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32953600432
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5