BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496698
Length=1761
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64813.1 | Symbols: LIP1 | Ras-related small GTP-binding fam... 2071 0.0
AT5G09910.1 | Symbols: | Ras-related small GTP-binding family ... 754 0.0
> AT5G64813.1 | Symbols: LIP1 | Ras-related small GTP-binding family
protein | chr5:25910279-25912896 FORWARD LENGTH=1857
Length=1857
Score = 2071 bits (1121), Expect = 0.0
Identities = 1248/1308 (95%), Gaps = 14/1308 (1%)
Strand=Plus/Plus
Query 460 AATGAAGTTTTGGAGGGAACGTGAAAGGGACAATAAGGAGCACATCTTAGCTCCATTATG 519
|||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||
Sbjct 557 AATGAAGTTTTGGAGGGAACGTGAAAGGGAAAATAAGGAGCAGATCTTAGCGCCATTATG 616
Query 520 TGGGCAAGTTCGAGTATTGGTTGTTGGTGACTCAGGTGTTGGAAAAACATCACTTGTACA 579
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 617 TGGGCAAGTTCGAGTGTTGGTAGTTGGTGACTCAGGTGTTGGAAAAACATCACTTGTACA 676
Query 580 CCTCATCAACAAAGGTTCTTCTATTGTTCGCCCACCTCAAACTATTGGATGCACAGTTGG 639
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 677 CCTCATCAACAAAGGTTCTTCTATTGTTCGCCCACCTCAAACGATTGGATGCACTGTTGG 736
Query 640 TGTCAAGCACATAACCTACGGGAGTCCAGCTAGTTCTTCAAGTAGCATTCAAGGTGACTC 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 737 TGTCAAGCACATAACCTACGGGAGTCCAGCTAGTTCTTCAAGTAGCATTCAAGGTGACTC 796
Query 700 AGAGAGAGATTTCTTTGTTGAACTCTGGGATGTGTCTGGGCATGAGAGATACAAAGATTG 759
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 797 AGAGAGAGATTTCTTTGTTGAACTCTGGGATGTATCAGGGCATGAGAGATACAAAGATTG 856
Query 760 TCGGTCACTGTTCTATTCACAAATCAATGGCGTTATTTTTGTTCACGATCTATCTCAAAG 819
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 857 CCGGTCACTGTTCTATTCACAAATCAATGGAGTTATTTTTGTTCACGATCTCTCTCAAAG 916
Query 820 AAGAACAAAAACAAGCTTGCAGAGATGGGCGTCTGAGGTTGCAGCGACTGGGACTTTTTC 879
|||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 917 AAGAACAAAAACGAGCTTGCAGAAATGGGCATCTGAGGTTGCAGCGACTGGGACTTTTTC 976
Query 880 AGCTCCTCTTCCCTCGGGTGGTCCTGGTGGTCTTCCTGTTCCATACATTGTAGTTGGCAA 939
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 977 AGCTCCTCTTCCCTCGGGAGGTCCCGGTGGTCTTCCTGTTCCATACATTGTAGTTGGCAA 1036
Query 940 CAAAGCAGATATTGCTGCAAAAGAAGGAACAAAAGGAAGCAGTGGAAATCTTGTTGATGC 999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CAAAGCAGATATTGCTGCAAAAGAAGGAACAAAAGGAAGCAGTGGAAATCTTGTTGATGC 1096
Query 1000 AGCTCGTCATTGGGTTGAGAAGCAAGGTTTGCTTCCTTCTTCAAGTGAGGATCTTCCTCT 1059
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1097 AGCTCGTCATTGGGTTGAGAAGCAAGGTTTGCTTCCTTCTTCAAGTGAGGATCTCCCTCT 1156
Query 1060 CTTTGAAAGCTTTCCTGGTAATGGCGGTCTCATAGCGGCTGCCAAAGAAACCAGATACGA 1119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1157 CTTTGAAAGCTTTCCTGGTAATGGCGGTCTCATAGCGGCTGCCAAAGAAACCAGATACGA 1216
Query 1120 TAAGGAAGCTTTGAACAAATTTTTCCGGATGTTGATAAGAAGAAGATATTTCTCAGATGA 1179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1217 TAAGGAAGCTTTGAACAAATTTTTCCGGATGTTGATAAGAAGAAGATATTTCTCAGATGA 1276
Query 1180 ACTGCCAGCAGCCTCACCATGGTCTGTTTCGTCCA-TTCCAACCTCATCATCCCAACGGT 1238
|||||||||||| |||||||||||| ||||| || ||||||| |||||||| |||||||
Sbjct 1277 ACTGCCAGCAGCTTCACCATGGTCTATTTCG-CCGGTTCCAACGTCATCATCGCAACGGT 1335
Query 1239 TAGACGAGATCACAAGTGATGATGATCAATTTTACAAGCGAACAAGTTTACATGGAGAAC 1298
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1336 TAGACGAGATTACAAGTGATGATGATCAATTTTACAAGCGAACAAGTTTCCATGGAGATC 1395
Query 1299 CATACAAGTACAACAACACATTACTGCCACTTCCAGCACAACGCAACCTAACTCCGCCTC 1358
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1396 CATACAAGTACAACAACACAATACCACCACTTCCAGCACAACGCAACCTAACTCCGCCTC 1455
Query 1359 CCACGCTCTATCCGCAACAACCTGTGTCTACCCCTGATAACTACGCCATCCCGAGATACT 1418
|||||||||||||||||||||| ||||| ||||||||||||||| |||| ||||||||||
Sbjct 1456 CCACGCTCTATCCGCAACAACCAGTGTCCACCCCTGATAACTACACCATTCCGAGATACT 1515
Query 1419 CTCTTTCCAGTGTACAAGAATCAACCAACAATGGCAGTGCCAGAG-CTAAGCGAATGGAT 1477
|||||||||||||||||||| |||||||||||||||||||||| | | ||||||||||||
Sbjct 1516 CTCTTTCCAGTGTACAAGAAACAACCAACAATGGCAGTGCCAG-GTCAAAGCGAATGGAT 1574
Query 1478 ATAAACGTCTGAAGTCTCTCATCTCTTGTTTGCTCTTCTCATTCCAAGAAAACTTCATGT 1537
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1575 ATTAACGTCTGAAGTCTCTCATCTCTTGTTAGCTCTTCTCATTCCAAGAAAACTTTATGT 1634
Query 1538 TATTGCTTTTGGATCTCTATTATTCTTTTTGATTCTTCTTTGTAGGTTGGTAAAGTGAAT 1597
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1635 T---GCTTTTGGATCTCTATTATTCTTTTTGATTCTTCTTTGTAGGTTGGTAAAGTGAAT 1691
Query 1598 ATGTGTG-TAAACCC-TCTTTGGTTTGTACATTGTGGGGTTTTGATCTTATAGCAAATTC 1655
||||||| | ||||| |||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 1692 ATGTGTGCTTAACCCCTCTTTGATTTGTACATTGTGGGGTTT-GATCTTATAGCAAATTC 1750
Query 1656 TTTGAATGtttttttttttttGGTTATCATATGTATTACACAGTGAACGGTTACAAAATC 1715
||||||||||||||||| || ||||||||| |||||||||| |||| | ||||||||||
Sbjct 1751 TTTGAATGTTTTTTTTTCTTGGGTTATCAT--GTATTACACACTGAATGATTACAAAATC 1808
Query 1716 ACAATAATGTTTGTTAttttt-tt-ACAATCTAAGCATATCAGTTTGT 1761
||||||||||||||||||||| || ||||||||| |||||||||||||
Sbjct 1809 ACAATAATGTTTGTTATTTTTGTTTACAATCTAATCATATCAGTTTGT 1856
Score = 357 bits (193), Expect = 2e-97
Identities = 283/323 (88%), Gaps = 19/323 (6%)
Strand=Plus/Plus
Query 1 AAACGAAGTCGTTTCATATTTACGCTCTTCCGCCCCAAATCTGAAACACTCGTAAGTAAA 60
||||||||||||||||||| | | ||||||| ||||||||| ||||||| |||||||||
Sbjct 3 AAACGAAGTCGTTTCATATCT--GTTCTTCCG-CCCAAATCTCAAACACTAGTAAGTAAA 59
Query 61 TTCGAA-GGAATTTTGGATCTCTCTGATCTCGATCCAGATTCTCTCTACTT-TGCTTATC 118
|||||| ||| | |||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 60 TTCGAAGGGAGTCTTGGATCTCTCTGATCTCGATCCAGATTCTCTCTACTTCT-CTTATC 118
Query 119 TTCCAGAGAGAAATTTGCATCTTCAGATTTATTCGAGGAGGAAGACGAACCCTAATTGAT 178
||| | ||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 119 TTCGATAGAGAAATTTGTATCTTCAGATTTATTCGAGGAGGAAGACGAACCCTACTTGAT 178
Query 179 TGATTTCGGTGGAGGAGAGATCTTTCTAAAGAAGTTTGATTCTG-----A-T----CTGA 228
|||||| || || |||||||||||||| || ||||||||||||| | | ||||
Sbjct 179 TGATTTAGGAGGTGGAGAGATCTTTCTGAACAAGTTTGATTCTGTTGGTAATTGATCTGA 238
Query 229 AATCATAGGTTTCAGCCGTAGATCTGCTGCTTCTTTCGATCGATTCGGGAAATCTGTAG- 287
|||| ||||||| ||||||||||||||||||| |||||||||||| |||| | | ||||
Sbjct 239 AATCCTAGGTTTTAGCCGTAGATCTGCTGCTTGTTTCGATCGATTTGGGATACC-GTAGG 297
Query 288 TATTGATTCCATAGAATTT-TCG 309
||||||||||||||||||| |||
Sbjct 298 TATTGATTCCATAGAATTTCTCG 320
> AT5G09910.1 | Symbols: | Ras-related small GTP-binding family
protein | chr5:3093272-3095156 FORWARD LENGTH=1130
Length=1130
Score = 754 bits (408), Expect = 0.0
Identities = 838/1039 (81%), Gaps = 55/1039 (5%)
Strand=Plus/Plus
Query 466 GTTTTGGAGGGAACGTGAAAGGGACAATAAGGAGCACATCTTAGCTCCATTATGTGGGCA 525
||||||||||||||||| ||||| |||||||| || || |||| |||||||| || ||
Sbjct 6 GTTTTGGAGGGAACGTGGCAGGGAAAATAAGGAACATATGGTAGCGCCATTATGCGGCCA 65
Query 526 AGTTCGAGTATTGGTTGTTGGTGACTCAGGTGTTGGAAAAACATCACTTGTACACCTCAT 585
| ||||||||||||| |||||||| |||||||| |||||| |||| ||||| || |||||
Sbjct 66 AATTCGAGTATTGGTGGTTGGTGATTCAGGTGTGGGAAAATCATCTCTTGTGCATCTCAT 125
Query 586 CAACAAAGGTTCTTCTATTGTTCGCCCACCTCAAACTATTGGATGCACAGTTGGTGTCAA 645
|||||| || ||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 126 TGTCAAAGGCTCCTCTATTGTTCGCCCATCTCAAACTATTGGATGTACAGTTGGTGTCAA 185
Query 646 GCACATAACCTACGGGAGTCCAGCTAGTTCTTCAAGTAGCATTCAAGGTGACTCAGAGAG 705
|||| |||| |||| ||||| |||||||||||||||| |||| ||||||||||||||||
Sbjct 186 GCACTTAACTTACGCAAGTCCTGCTAGTTCTTCAAGTATCATTAAAGGTGACTCAGAGAG 245
Query 706 AGATTTCTTTGTTGAACTCTGGGATGTGTCTGGGCATGAGA-GATACAAAGATTGTCGGT 764
||||||||| || ||||| |||||||| || || ||||| | ||||||||||||| || |
Sbjct 246 AGATTTCTTCGTCGAACTTTGGGATGTTTCAGGTCATGA-ACGATACAAAGATTGCCGCT 304
Query 765 CACTGTTCTATTCACAAATCAATGGCGTTATTTTTGTTCACGATCTATCTCAAAGAAGAA 824
||||||||||||||||||||||||| |||||||||||||| ||||| || ||||| | |
Sbjct 305 CACTGTTCTATTCACAAATCAATGGAGTTATTTTTGTTCATGATCTTTCGCAAAGGACTA 364
Query 825 CAAAAAC-AAGCTTGCAGAGATGGGCGTCTGAGGTTGCAGCGACT-GGGACTTTTTCAGC 882
||||||| || ||||||| ||||||| ||| ||| ||| ||| |||| ||||||||
Sbjct 365 CAAAAACTAA-TTTGCAGAAATGGGCGGGTGAAGTTTCAGTAACTGGGGA-GTTTTCAGC 422
Query 883 TCCTCTTCCCTCGGGTGGTCCTGGTGGTCTTCCTGTTCCATACATTG-TAGTTGGCAACA 941
||| ||| | || ||||| |||||||||||||| || |||||||| | || |||| ||||
Sbjct 423 TCCCCTTTCTTCTGGTGGGCCTGGTGGTCTTCCCGTCCCATACATCGTTA-TTGGAAACA 481
Query 942 AAGCAGATATTGCTGCAAAAGAAGGAACAAAAGGAAGCAGTGGAAATCTTGTTGATGCAG 1001
|||| ||||||||||| |||| ||||||||| ||||||||||| ||||||||||||||||
Sbjct 482 AAGCTGATATTGCTGCCAAAGGAGGAACAAATGGAAGCAGTGGCAATCTTGTTGATGCAG 541
Query 1002 CTCGTCATTGGGTTGAGAAGCAAGGTTTGCTTCCTTCTTCAAGTGAGGATCTTCCTCTCT 1061
|||||||||||||||||||||| ||| ||||||| | | | |||| || ||||||||||
Sbjct 542 CTCGTCATTGGGTTGAGAAGCAGGGTCTGCTTCCC-CAT-A-GTGATGAACTTCCTCTCT 598
Query 1062 TTGAAAGCTTTCCTGGTAATGGCGGTCTCATAGCGGCTGCCAAAGAAACCAGATACGATA 1121
||| ||||| ||| | |||| ||||||||| ||||||||| ||| | ||||| || |
Sbjct 599 CTGAGAGCTTCCCTAGCAATGTTGGTCTCATAATGGCTGCCAAGGAAGCTAGATATGACA 658
Query 1122 AGGAAGCTTTGAACAAATTTTTCCGGATGTTGATAAGAAGAAGATATTTCTCAGATGAAC 1181
| |||||| ||| |||| |||||| ||||||||||||||||||||||||||||| ||||
Sbjct 659 AAGAAGCTCTGACCAAAATTTTCCATATGTTGATAAGAAGAAGATATTTCTCAGACGAAC 718
Query 1182 TGCCAG-CAGCCT-CA-C--CATGGTCTGTTTCGTCCATTCCAACCTCATCATCCCAACG 1236
| || | | |||| | | |||||||| |||| |||| | | ||| || || | ||
Sbjct 719 TACC-GTC-GCCTTCTTCAGCATGGTCTCTTTC--CCATGC-A-CCT--TC--CC-AGCG 767
Query 1237 GTTAGACGAGATCACAAGTGATGATGATCAATTTTACAAGCGAACAAGTTTACATGGA-G 1295
|||||| ||| |||||||||||| ||||| || || || ||||||| || | ||| |
Sbjct 768 GTTAGATGAGGGCACAAGTGATGAAGATCAGTTCTATAAAAGAACAAGCCTA-AGGGAAG 826
Query 1296 AACCATACAAGTACAACAACACATTACTGCCACTT-CCAGCACAACGCAACCTAACTCC- 1353
| || | ||||| | | | || | | || || ||| | | ||| || | | |
Sbjct 827 GAG-ATGCT--TACAA-AT-ATA--ACA-C-A-TTACC-GCA-A-CACAATCTCA-TGCA 872
Query 1354 GCCTCCCACGCTCTATCCGCAACAACCTG-TGTCTACCCCTGATAACTACGCCATCCCGA 1412
| |||| || ||||||||||| ||||| || ||| | | || ||||| || ||||
Sbjct 873 GTCTCCTACACTCTATCCGCAGCAACCACCTG---ACCGTT-ACAATTACGCTATTCCGA 928
Query 1413 GATACTCTCTTTCCAGTGTACAAGAATCAACCAACAATGGCAGTGCCAGAG-CTAAGCGA 1471
||| |||||||||||||||| | ||| | ||| |||||| | || ||| | |||||||
Sbjct 929 GATTCTCTCTTTCCAGTGTAGAGGAA--A-CCAGCAATGGTAATGGCAG-GTCTAAGCGG 984
Query 1472 ATGGATATAAACGTCTGAA 1490
|||||||| ||||||||||
Sbjct 985 ATGGATATTAACGTCTGAA 1003
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87097945575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5