BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg496698 Length=1761 Score E Sequences producing significant alignments: (Bits) Value AT5G64813.1 | Symbols: LIP1 | Ras-related small GTP-binding fam... 2071 0.0 AT5G09910.1 | Symbols: | Ras-related small GTP-binding family ... 754 0.0 > AT5G64813.1 | Symbols: LIP1 | Ras-related small GTP-binding family protein | chr5:25910279-25912896 FORWARD LENGTH=1857 Length=1857 Score = 2071 bits (1121), Expect = 0.0 Identities = 1248/1308 (95%), Gaps = 14/1308 (1%) Strand=Plus/Plus Query 460 AATGAAGTTTTGGAGGGAACGTGAAAGGGACAATAAGGAGCACATCTTAGCTCCATTATG 519 |||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||| Sbjct 557 AATGAAGTTTTGGAGGGAACGTGAAAGGGAAAATAAGGAGCAGATCTTAGCGCCATTATG 616 Query 520 TGGGCAAGTTCGAGTATTGGTTGTTGGTGACTCAGGTGTTGGAAAAACATCACTTGTACA 579 ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 617 TGGGCAAGTTCGAGTGTTGGTAGTTGGTGACTCAGGTGTTGGAAAAACATCACTTGTACA 676 Query 580 CCTCATCAACAAAGGTTCTTCTATTGTTCGCCCACCTCAAACTATTGGATGCACAGTTGG 639 |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 677 CCTCATCAACAAAGGTTCTTCTATTGTTCGCCCACCTCAAACGATTGGATGCACTGTTGG 736 Query 640 TGTCAAGCACATAACCTACGGGAGTCCAGCTAGTTCTTCAAGTAGCATTCAAGGTGACTC 699 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 737 TGTCAAGCACATAACCTACGGGAGTCCAGCTAGTTCTTCAAGTAGCATTCAAGGTGACTC 796 Query 700 AGAGAGAGATTTCTTTGTTGAACTCTGGGATGTGTCTGGGCATGAGAGATACAAAGATTG 759 ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 797 AGAGAGAGATTTCTTTGTTGAACTCTGGGATGTATCAGGGCATGAGAGATACAAAGATTG 856 Query 760 TCGGTCACTGTTCTATTCACAAATCAATGGCGTTATTTTTGTTCACGATCTATCTCAAAG 819 ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 857 CCGGTCACTGTTCTATTCACAAATCAATGGAGTTATTTTTGTTCACGATCTCTCTCAAAG 916 Query 820 AAGAACAAAAACAAGCTTGCAGAGATGGGCGTCTGAGGTTGCAGCGACTGGGACTTTTTC 879 |||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||| Sbjct 917 AAGAACAAAAACGAGCTTGCAGAAATGGGCATCTGAGGTTGCAGCGACTGGGACTTTTTC 976 Query 880 AGCTCCTCTTCCCTCGGGTGGTCCTGGTGGTCTTCCTGTTCCATACATTGTAGTTGGCAA 939 |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 977 AGCTCCTCTTCCCTCGGGAGGTCCCGGTGGTCTTCCTGTTCCATACATTGTAGTTGGCAA 1036 Query 940 CAAAGCAGATATTGCTGCAAAAGAAGGAACAAAAGGAAGCAGTGGAAATCTTGTTGATGC 999 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1037 CAAAGCAGATATTGCTGCAAAAGAAGGAACAAAAGGAAGCAGTGGAAATCTTGTTGATGC 1096 Query 1000 AGCTCGTCATTGGGTTGAGAAGCAAGGTTTGCTTCCTTCTTCAAGTGAGGATCTTCCTCT 1059 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1097 AGCTCGTCATTGGGTTGAGAAGCAAGGTTTGCTTCCTTCTTCAAGTGAGGATCTCCCTCT 1156 Query 1060 CTTTGAAAGCTTTCCTGGTAATGGCGGTCTCATAGCGGCTGCCAAAGAAACCAGATACGA 1119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1157 CTTTGAAAGCTTTCCTGGTAATGGCGGTCTCATAGCGGCTGCCAAAGAAACCAGATACGA 1216 Query 1120 TAAGGAAGCTTTGAACAAATTTTTCCGGATGTTGATAAGAAGAAGATATTTCTCAGATGA 1179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1217 TAAGGAAGCTTTGAACAAATTTTTCCGGATGTTGATAAGAAGAAGATATTTCTCAGATGA 1276 Query 1180 ACTGCCAGCAGCCTCACCATGGTCTGTTTCGTCCA-TTCCAACCTCATCATCCCAACGGT 1238 |||||||||||| |||||||||||| ||||| || ||||||| |||||||| ||||||| Sbjct 1277 ACTGCCAGCAGCTTCACCATGGTCTATTTCG-CCGGTTCCAACGTCATCATCGCAACGGT 1335 Query 1239 TAGACGAGATCACAAGTGATGATGATCAATTTTACAAGCGAACAAGTTTACATGGAGAAC 1298 |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 1336 TAGACGAGATTACAAGTGATGATGATCAATTTTACAAGCGAACAAGTTTCCATGGAGATC 1395 Query 1299 CATACAAGTACAACAACACATTACTGCCACTTCCAGCACAACGCAACCTAACTCCGCCTC 1358 |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 1396 CATACAAGTACAACAACACAATACCACCACTTCCAGCACAACGCAACCTAACTCCGCCTC 1455 Query 1359 CCACGCTCTATCCGCAACAACCTGTGTCTACCCCTGATAACTACGCCATCCCGAGATACT 1418 |||||||||||||||||||||| ||||| ||||||||||||||| |||| |||||||||| Sbjct 1456 CCACGCTCTATCCGCAACAACCAGTGTCCACCCCTGATAACTACACCATTCCGAGATACT 1515 Query 1419 CTCTTTCCAGTGTACAAGAATCAACCAACAATGGCAGTGCCAGAG-CTAAGCGAATGGAT 1477 |||||||||||||||||||| |||||||||||||||||||||| | | |||||||||||| Sbjct 1516 CTCTTTCCAGTGTACAAGAAACAACCAACAATGGCAGTGCCAG-GTCAAAGCGAATGGAT 1574 Query 1478 ATAAACGTCTGAAGTCTCTCATCTCTTGTTTGCTCTTCTCATTCCAAGAAAACTTCATGT 1537 || ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| Sbjct 1575 ATTAACGTCTGAAGTCTCTCATCTCTTGTTAGCTCTTCTCATTCCAAGAAAACTTTATGT 1634 Query 1538 TATTGCTTTTGGATCTCTATTATTCTTTTTGATTCTTCTTTGTAGGTTGGTAAAGTGAAT 1597 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1635 T---GCTTTTGGATCTCTATTATTCTTTTTGATTCTTCTTTGTAGGTTGGTAAAGTGAAT 1691 Query 1598 ATGTGTG-TAAACCC-TCTTTGGTTTGTACATTGTGGGGTTTTGATCTTATAGCAAATTC 1655 ||||||| | ||||| |||||| ||||||||||||||||||| ||||||||||||||||| Sbjct 1692 ATGTGTGCTTAACCCCTCTTTGATTTGTACATTGTGGGGTTT-GATCTTATAGCAAATTC 1750 Query 1656 TTTGAATGtttttttttttttGGTTATCATATGTATTACACAGTGAACGGTTACAAAATC 1715 ||||||||||||||||| || ||||||||| |||||||||| |||| | |||||||||| Sbjct 1751 TTTGAATGTTTTTTTTTCTTGGGTTATCAT--GTATTACACACTGAATGATTACAAAATC 1808 Query 1716 ACAATAATGTTTGTTAttttt-tt-ACAATCTAAGCATATCAGTTTGT 1761 ||||||||||||||||||||| || ||||||||| ||||||||||||| Sbjct 1809 ACAATAATGTTTGTTATTTTTGTTTACAATCTAATCATATCAGTTTGT 1856 Score = 357 bits (193), Expect = 2e-97 Identities = 283/323 (88%), Gaps = 19/323 (6%) Strand=Plus/Plus Query 1 AAACGAAGTCGTTTCATATTTACGCTCTTCCGCCCCAAATCTGAAACACTCGTAAGTAAA 60 ||||||||||||||||||| | | ||||||| ||||||||| ||||||| ||||||||| Sbjct 3 AAACGAAGTCGTTTCATATCT--GTTCTTCCG-CCCAAATCTCAAACACTAGTAAGTAAA 59 Query 61 TTCGAA-GGAATTTTGGATCTCTCTGATCTCGATCCAGATTCTCTCTACTT-TGCTTATC 118 |||||| ||| | |||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 60 TTCGAAGGGAGTCTTGGATCTCTCTGATCTCGATCCAGATTCTCTCTACTTCT-CTTATC 118 Query 119 TTCCAGAGAGAAATTTGCATCTTCAGATTTATTCGAGGAGGAAGACGAACCCTAATTGAT 178 ||| | ||||||||||| |||||||||||||||||||||||||||||||||||| ||||| Sbjct 119 TTCGATAGAGAAATTTGTATCTTCAGATTTATTCGAGGAGGAAGACGAACCCTACTTGAT 178 Query 179 TGATTTCGGTGGAGGAGAGATCTTTCTAAAGAAGTTTGATTCTG-----A-T----CTGA 228 |||||| || || |||||||||||||| || ||||||||||||| | | |||| Sbjct 179 TGATTTAGGAGGTGGAGAGATCTTTCTGAACAAGTTTGATTCTGTTGGTAATTGATCTGA 238 Query 229 AATCATAGGTTTCAGCCGTAGATCTGCTGCTTCTTTCGATCGATTCGGGAAATCTGTAG- 287 |||| ||||||| ||||||||||||||||||| |||||||||||| |||| | | |||| Sbjct 239 AATCCTAGGTTTTAGCCGTAGATCTGCTGCTTGTTTCGATCGATTTGGGATACC-GTAGG 297 Query 288 TATTGATTCCATAGAATTT-TCG 309 ||||||||||||||||||| ||| Sbjct 298 TATTGATTCCATAGAATTTCTCG 320 > AT5G09910.1 | Symbols: | Ras-related small GTP-binding family protein | chr5:3093272-3095156 FORWARD LENGTH=1130 Length=1130 Score = 754 bits (408), Expect = 0.0 Identities = 838/1039 (81%), Gaps = 55/1039 (5%) Strand=Plus/Plus Query 466 GTTTTGGAGGGAACGTGAAAGGGACAATAAGGAGCACATCTTAGCTCCATTATGTGGGCA 525 ||||||||||||||||| ||||| |||||||| || || |||| |||||||| || || Sbjct 6 GTTTTGGAGGGAACGTGGCAGGGAAAATAAGGAACATATGGTAGCGCCATTATGCGGCCA 65 Query 526 AGTTCGAGTATTGGTTGTTGGTGACTCAGGTGTTGGAAAAACATCACTTGTACACCTCAT 585 | ||||||||||||| |||||||| |||||||| |||||| |||| ||||| || ||||| Sbjct 66 AATTCGAGTATTGGTGGTTGGTGATTCAGGTGTGGGAAAATCATCTCTTGTGCATCTCAT 125 Query 586 CAACAAAGGTTCTTCTATTGTTCGCCCACCTCAAACTATTGGATGCACAGTTGGTGTCAA 645 |||||| || ||||||||||||||| |||||||||||||||| |||||||||||||| Sbjct 126 TGTCAAAGGCTCCTCTATTGTTCGCCCATCTCAAACTATTGGATGTACAGTTGGTGTCAA 185 Query 646 GCACATAACCTACGGGAGTCCAGCTAGTTCTTCAAGTAGCATTCAAGGTGACTCAGAGAG 705 |||| |||| |||| ||||| |||||||||||||||| |||| |||||||||||||||| Sbjct 186 GCACTTAACTTACGCAAGTCCTGCTAGTTCTTCAAGTATCATTAAAGGTGACTCAGAGAG 245 Query 706 AGATTTCTTTGTTGAACTCTGGGATGTGTCTGGGCATGAGA-GATACAAAGATTGTCGGT 764 ||||||||| || ||||| |||||||| || || ||||| | ||||||||||||| || | Sbjct 246 AGATTTCTTCGTCGAACTTTGGGATGTTTCAGGTCATGA-ACGATACAAAGATTGCCGCT 304 Query 765 CACTGTTCTATTCACAAATCAATGGCGTTATTTTTGTTCACGATCTATCTCAAAGAAGAA 824 ||||||||||||||||||||||||| |||||||||||||| ||||| || ||||| | | Sbjct 305 CACTGTTCTATTCACAAATCAATGGAGTTATTTTTGTTCATGATCTTTCGCAAAGGACTA 364 Query 825 CAAAAAC-AAGCTTGCAGAGATGGGCGTCTGAGGTTGCAGCGACT-GGGACTTTTTCAGC 882 ||||||| || ||||||| ||||||| ||| ||| ||| ||| |||| |||||||| Sbjct 365 CAAAAACTAA-TTTGCAGAAATGGGCGGGTGAAGTTTCAGTAACTGGGGA-GTTTTCAGC 422 Query 883 TCCTCTTCCCTCGGGTGGTCCTGGTGGTCTTCCTGTTCCATACATTG-TAGTTGGCAACA 941 ||| ||| | || ||||| |||||||||||||| || |||||||| | || |||| |||| Sbjct 423 TCCCCTTTCTTCTGGTGGGCCTGGTGGTCTTCCCGTCCCATACATCGTTA-TTGGAAACA 481 Query 942 AAGCAGATATTGCTGCAAAAGAAGGAACAAAAGGAAGCAGTGGAAATCTTGTTGATGCAG 1001 |||| ||||||||||| |||| ||||||||| ||||||||||| |||||||||||||||| Sbjct 482 AAGCTGATATTGCTGCCAAAGGAGGAACAAATGGAAGCAGTGGCAATCTTGTTGATGCAG 541 Query 1002 CTCGTCATTGGGTTGAGAAGCAAGGTTTGCTTCCTTCTTCAAGTGAGGATCTTCCTCTCT 1061 |||||||||||||||||||||| ||| ||||||| | | | |||| || |||||||||| Sbjct 542 CTCGTCATTGGGTTGAGAAGCAGGGTCTGCTTCCC-CAT-A-GTGATGAACTTCCTCTCT 598 Query 1062 TTGAAAGCTTTCCTGGTAATGGCGGTCTCATAGCGGCTGCCAAAGAAACCAGATACGATA 1121 ||| ||||| ||| | |||| ||||||||| ||||||||| ||| | ||||| || | Sbjct 599 CTGAGAGCTTCCCTAGCAATGTTGGTCTCATAATGGCTGCCAAGGAAGCTAGATATGACA 658 Query 1122 AGGAAGCTTTGAACAAATTTTTCCGGATGTTGATAAGAAGAAGATATTTCTCAGATGAAC 1181 | |||||| ||| |||| |||||| ||||||||||||||||||||||||||||| |||| Sbjct 659 AAGAAGCTCTGACCAAAATTTTCCATATGTTGATAAGAAGAAGATATTTCTCAGACGAAC 718 Query 1182 TGCCAG-CAGCCT-CA-C--CATGGTCTGTTTCGTCCATTCCAACCTCATCATCCCAACG 1236 | || | | |||| | | |||||||| |||| |||| | | ||| || || | || Sbjct 719 TACC-GTC-GCCTTCTTCAGCATGGTCTCTTTC--CCATGC-A-CCT--TC--CC-AGCG 767 Query 1237 GTTAGACGAGATCACAAGTGATGATGATCAATTTTACAAGCGAACAAGTTTACATGGA-G 1295 |||||| ||| |||||||||||| ||||| || || || ||||||| || | ||| | Sbjct 768 GTTAGATGAGGGCACAAGTGATGAAGATCAGTTCTATAAAAGAACAAGCCTA-AGGGAAG 826 Query 1296 AACCATACAAGTACAACAACACATTACTGCCACTT-CCAGCACAACGCAACCTAACTCC- 1353 | || | ||||| | | | || | | || || ||| | | ||| || | | | Sbjct 827 GAG-ATGCT--TACAA-AT-ATA--ACA-C-A-TTACC-GCA-A-CACAATCTCA-TGCA 872 Query 1354 GCCTCCCACGCTCTATCCGCAACAACCTG-TGTCTACCCCTGATAACTACGCCATCCCGA 1412 | |||| || ||||||||||| ||||| || ||| | | || ||||| || |||| Sbjct 873 GTCTCCTACACTCTATCCGCAGCAACCACCTG---ACCGTT-ACAATTACGCTATTCCGA 928 Query 1413 GATACTCTCTTTCCAGTGTACAAGAATCAACCAACAATGGCAGTGCCAGAG-CTAAGCGA 1471 ||| |||||||||||||||| | ||| | ||| |||||| | || ||| | ||||||| Sbjct 929 GATTCTCTCTTTCCAGTGTAGAGGAA--A-CCAGCAATGGTAATGGCAG-GTCTAAGCGG 984 Query 1472 ATGGATATAAACGTCTGAA 1490 |||||||| |||||||||| Sbjct 985 ATGGATATTAACGTCTGAA 1003 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 87097945575 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5