BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496702
Length=1459
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64830.1 | Symbols: | programmed cell death 2 C-terminal do... 1888 0.0
> AT5G64830.1 | Symbols: | programmed cell death 2 C-terminal
domain-containing protein | chr5:25914638-25916624 REVERSE LENGTH=1528
Length=1528
Score = 1888 bits (1022), Expect = 0.0
Identities = 1328/1470 (90%), Gaps = 44/1470 (3%)
Strand=Plus/Plus
Query 17 AAGAGCTCTGTTCTACTTTGATC-GGAGAACTGTATGTAACCATGGTCGGAATTCTTCTG 75
||||||||||||||||||||||| ||| ||| |||||| ||||||||||||||||||
Sbjct 76 AAGAGCTCTGTTCTACTTTGATCGGGA-AAC----TGTAACAATGGTCGGAATTCTTCTG 130
Query 76 GGGTTACCTGGGCAGTGGGCAGAAGACGAGCTTGAGTCTTCTGATCACTACACAACAAAA 135
||||| |||||| ||||||||||||| ||||||||| ||||||||||||||||||| |||
Sbjct 131 GGGTTGCCTGGGAAGTGGGCAGAAGATGAGCTTGAGCCTTCTGATCACTACACAACCAAA 190
Query 136 ATCGGCGGTCTTCCGGATTGGCCACCAATACCCGATGATACACTGAAACCAAAACTACTC 195
||||| ||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||
Sbjct 191 ATCGGTGGTCTTCCGGATTGGCCGCCAATACCCGATGATGCACTGAAACCAGAACTACTC 250
Query 196 AATTGTTGTTCATGTGGAAGTAAACTTTCTCTCGTAGCTCAGGTGTATGCCCCAATCTCA 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 251 AATTGTTGTTCATGTGGAAGTAAACTTTCTCTCGTAGCTCAGGTGTATGCCCCAATCTCA 310
Query 256 ACTGAAATTTCAGACATCCAAGAGCGTACCCTCTACATATTCGGTTGCTTGATGCCTAGA 315
|||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||| |
Sbjct 311 ACTGAAATTTTAGACATCCAAGAGCGTACCCTCTATATATTTGGTTGCTTGATGCCTAAA 370
Query 316 TGTGGAACCTCTGAACAAAGCTGGAGAGCTTTTAGCGTTTGGAAAGCTATTGAAAAAGAG 375
|||||||||||||||||||| ||||||||||||||| || ||||||||| | |||||||
Sbjct 371 TGTGGAACCTCTGAACAAAGTTGGAGAGCTTTTAGCATTCAGAAAGCTATAGCAAAAGAG 430
Query 376 AAAGAATCAAGTGAAATGGTGGATTTACCTGT-CCCTTCGCCTCCAGATACATCTTCTAA 434
|||| ||||| | |||| | |||||| ||||| |||| ||| | | ||||| | |
Sbjct 431 AAAGGATCAACTAAAATAGCGGATTTGCCTGTGGCCTT-TCCT-AAAACACATC-GGTTA 487
Query 435 AAC--TCATTGGTTA-GACgatgatgatgatgatgaAGATTTTGATTTTGAGACTTTAGC 491
|| | | || | | || ||||||||||||||||||||||||||||||| || ||||||
Sbjct 488 GACGGTGA-TGATGATGATGATGATGATGATGATGAAGATTTTGATTTTGCGAGTTTAGC 546
Query 492 TAAGGCGCTCGCAGAGGCTTCTTCTGCTGCGGCTTCCAATT-CGAAGAAACAAAAGAGTA 550
||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 547 TAAGGCGCTGGCAGAGGCTTCTTCTGCTGCGGCTTCC-ATTACGAAGAAACAAAAGAGTA 605
Query 551 AACCAAATGGCAATGCTAGTTCAGGGACTAAAGCAAAGCCTTCGCCTTTCAAATCTGAAA 610
|||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 606 AACCAAGTGGCAATGCTAGTTCAGGGACTAAAGCAAAGCCTTCACCTTTGAAATCTGAAA 665
Query 611 CAAGAGTTGCGGATCAAATTAAAGTTGAGACTGGAGTGGTGGTTCCGTGCTTCTACATTT 670
||||||||| |||||| |||||| |||||||||| | |||||||||||||||||||||||
Sbjct 666 CAAGAGTTGAGGATCATATTAAACTTGAGACTGGTGCGGTGGTTCCGTGCTTCTACATTT 725
Query 671 ATACAAAGGAAGAGATCCCCTCAAAAGAAGTCGATCGATGCTCGA-TGAATTACTCGTCT 729
||||||||||||||||||||||||||||||| ||||||| ||| | |||||| ||||||
Sbjct 726 ATACAAAGGAAGAGATCCCCTCAAAAGAAGTTGATCGATTCTC-ACAGAATTATTCGTCT 784
Query 730 TTGTCCATCAAGGATAAAGAAACCGGCAACAATGATGAGAGTGAATCCGAAGAAACGTGG 789
|||| || |||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 785 CTGTCTATTAAGGATAAAGGAACCGGCAACAATGATGAGAGTGAATCCGAAGAAAAGTGG 844
Query 790 GAGGATGAGAAATATGAATATGACAGAGCCCTGAATGCAGATAGGACTTATCTTAAGTTC 849
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 845 GAGGATGAGAAATATGAATATGACAAAGCCCTGAATGCAGATAGGACTTATCTTAAGTTC 904
Query 850 AAAAAACGGCTAGATGCAAACCCGGAACAATGTTTCAGGTACTCGTATGGGGGTAAGCCG 909
|||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||
Sbjct 905 AAAAAACGGCTAGATGCAAATCCGGAACAATGTTTCAGGTACTGGTATGGCGGTAAGCCG 964
Query 910 ATTCTGGCCACTGAAGACATGAAATCTCCCGATAAATGCAGGAATTGCGACTCTCCAAGG 969
|| || ||||| ||||||||||||||||| |||||||||||||| |||||||||| ||||
Sbjct 965 ATACTAGCCACAGAAGACATGAAATCTCCGGATAAATGCAGGAACTGCGACTCTCAAAGG 1024
Query 970 CACTTTGAGATACAACTCATGCCTCCATTAATATATTTTCTACATGAAGGTGTTGTGGAT 1029
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1025 CACTTTGAGATACAACTCATGCCTCCATTAATATATTTTCTACATGAAGGTGTTGTTGAT 1084
Query 1030 GAAAGGC-TTAAGCAATCATTGGATAATTGGGATTGGATGACGCTTATTGTCTACACTTG 1088
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1085 -AAAGGAATTAAGCAATCATTGGATAATTGGGATTGGATGACACTTATTGTCTACACTTG 1143
Query 1089 TTCCAAGAACTGCGCAAACACTGTGAATGGCGATTGGGTTGTTACTGAGGAGTGTGTAGC 1148
|||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1144 TTCCAAGAGCTGTGCAAACGCTGTGAATGGCGATTGGGTTGTTACTGAGGAGTGTGTTGC 1203
Query 1149 AGTACAGTATGAGAAACCGATGAATCTTGATCATGCTAGCTTCTTCAAATGAAATTTTTT 1208
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1204 AGTACAGTATGAGAAACCGATGAATCTTGATCATGCTAGCTTCTTCAAATGAAAATTTTC 1263
Query 1209 CCCTAAGAAGATGTTGCTGAAGTGATTACAGCTATCAAGAAGTCAAATGCGGCATGAAAA 1268
|||||||||||||||||| ||||||||| |||||||||||||||||||||| |||| ||
Sbjct 1264 CCCTAAGAAGATGTTGCTCAAGTGATTATAGCTATCAAGAAGTCAAATGCGCCATGGAAT 1323
Query 1269 TATGTTCTTCAATTGTTTCAGGACAGA-GATCCTCAAGAAGAGTG-AGCTGCTTAAAAAA 1326
||| ||||| ||||||||||||||||| | ||| |||||||| || ||||||| ||| |
Sbjct 1324 TATCTTCTTAAATTGTTTCAGGACAGATG-TCCCCAAGAAGA-TGGAGCTGCT-AAACA- 1379
Query 1327 TACATTT-TTAT-TTAAAATGATTAGTCTTTTTGTAA---------------GACAGATG 1369
||||||| || | |||||||||||||||||| ||||| ||||||||
Sbjct 1380 TACATTTCTTTTGTTAAAATGATTAGTCTTTATGTAACATTAAATTTTATAAGACAGATG 1439
Query 1370 CTTTTATTGGATTTCTTTCGATTTAATTCTCTAAAAAGTCAAATGCAAGAACCGTTCAAA 1429
||||||||||||| ||| ||||||||||||| || ||||| |||||||||||||||||
Sbjct 1440 CTTTTATTGGATTAGTTTTGATTTAATTCTCTTTAAGGTCAA-TGCAAGAACCGTTCAAA 1498
Query 1430 CAAAAAATGTGCTCTGCCTCTTTTGATGCG 1459
| ||||||||| ||||| ||||||||||||
Sbjct 1499 CCAAAAATGTGTTCTGCTTCTTTTGATGCG 1528
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71937380985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5