BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg496705

Length=749
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G64850.1 | Symbols:  | FUNCTIONS IN: molecular_function unkn...   905    0.0  
  AT5G09960.1 | Symbols:  | FUNCTIONS IN: molecular_function unkn...   174    9e-43


> AT5G64850.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
INVOLVED IN: biological_process unknown; LOCATED IN: 
plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED 
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RPM1-interacting 
protein 4, defence response (InterPro:IPR008700); 
BEST Arabidopsis thaliana protein match is: unknown protein 
(TAIR:AT5G09960.1); Has 30201 Blast hits to 17322 proteins 
in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; 
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes 
- 2996 (source: NCBI BLink). | chr5:25921409-25923358 FORWARD 
LENGTH=841
Length=841

 Score =  905 bits (490),  Expect = 0.0
 Identities = 579/619 (94%), Gaps = 17/619 (3%)
 Strand=Plus/Plus

Query  1    ATCGACCTGTTACTTTGCTGTATTAAATTTTGGTATACTTTTTCTTTAGCTTATATATAT  60
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||
Sbjct  24   ATCGACCTGTTACTTTGCTGTATTAAATTTTGGTATACTTTTTCTTTCGCTTATA-A-AT  81

Query  61   TGCTCTGTATCACCACCCATCTTCTTCCTAAGATCATCTCTAACTTTA-TATAGaaaaaa  119
            ||||||||||   ||||||||||| |||||||||||||| |||| ||| |||| ||||||
Sbjct  82   TGCTCTGTAT---CACCCATCTTCCTCCTAAGATCATCTTTAAC-TTATTATA-AAAAAA  136

Query  120  aaaaaCAGGATTCACTGCTAGCTAGCTG-ATC-ACAATTCACATGGAAGATCGAAAAGAG  177
            |||||||||||||||||||||||| | | | |    | ||||||||||||||||||||||
Sbjct  137  AAAAACAGGATTCACTGCTAGCTA-CAGAAGCTTTGA-TCACATGGAAGATCGAAAAGAG  194

Query  178  AACAAGAACTCGCCATGGCTATCAGTACCACAGTTTGGAGATTGGGATCAAAAAGGAGGA  237
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  195  AACAAGAACTCGCCATGGCTATCAGTACCACAGTTTGGAGATTGGGATCAAAAAGGAGGA  254

Query  238  TCAATTGATTACTCAATGGATTTCTCAAAGATCAGAGAGATGAGGAAACTTAACAAGAGA  297
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  255  TCAATTGATTACTCAATGGATTTCTCAAAGATCAGAGAGATGAGGAAACTCAACAAGAGA  314

Query  298  GATGCTTCTCGAGCCAGTCTTGGTAATGAGGAAGAACTCATTAACCCTTTTCATAATCAA  357
            ||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||| 
Sbjct  315  GATGCTTCTCGAGCCAGTCTTGGCAACGAGGAAGAACTCATTAACCCTTTTCATGATCAG  374

Query  358  CCTCCTGTTGATACTACCAAGCCTAAGAAGCTAACTACGGTTCACAGTGACAACAATAAC  417
            ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct  375  CCTCCTGTTGATACTGCCAAGCCTAAGAAGCTAACTACGGTTCACAGTGACAACAACAAC  434

Query  418  CACAATGAGTTCTCTCACCACCACCCACACTCTCCTTCTAGGAGGAGAGGAATCTTCAGC  477
            | |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct  435  CGCAATGAGTTCTCTCACCATCACCCACACTCTCCTTCTAGGAGGAGAAGAATCTTCAGC  494

Query  478  TGCTTCAACTGCTGCGTTAAAGCTTAAAGGTGTTTTTACTT--ATTTATGATAATAATAA  535
            ||||||||||| |||||||||||||||||||||||  ||||  |||||||||||||| ||
Sbjct  495  TGCTTCAACTGTTGCGTTAAAGCTTAAAGGTGTTT--ACTTTTATTTATGATAATAACAA  552

Query  536  CAAGGGGTGATATTTGAAGACAGAAATGAGAAATGGTAGTGACACCTTGTTTTC-ACATA  594
            ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| 
Sbjct  553  CAAGGGGTGATATTTGAAGACAGAAATGAGAAATGGTAGTGCCACCTTGTTTTCCACATG  612

Query  595  TGTTTCTTCGGATGCATCA  613
            ||||||||||| |||||||
Sbjct  613  TGTTTCTTCGGCTGCATCA  631


> AT5G09960.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
INVOLVED IN: biological_process unknown; LOCATED IN: 
plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED 
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RPM1-interacting 
protein 4, defence response (InterPro:IPR008700); 
BEST Arabidopsis thaliana protein match is: unknown protein 
(TAIR:AT5G64850.1); Has 30201 Blast hits to 17322 proteins 
in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; 
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes 
- 2996 (source: NCBI BLink). | chr5:3106320-3107829 FORWARD 
LENGTH=693
Length=693

 Score =  174 bits (94),  Expect = 9e-43
 Identities = 167/200 (84%), Gaps = 14/200 (7%)
 Strand=Plus/Plus

Query  152  CAATTCACATGG-A-A-GATCGAAAAGAGAACAAGAACTCGCCATGGCTATCAGTACCAC  208
            ||| ||| |||| | | ||||||||||||   |||||| | || ||||||||||| ||||
Sbjct  176  CAAATCATATGGAAGACGATCGAAAAGAG---AAGAACACTCCGTGGCTATCAGTGCCAC  232

Query  209  AGTTTGGAGATTGGGATC-AAAA--AGGAGGATCAAT---TGATTACTCAATGGATTTCT  262
            ||||||| |||||||| | ||||  ||||||| ||||   ||||||||| ||||||||| 
Sbjct  233  AGTTTGGTGATTGGGACCAAAAAGGAGGAGGAACAATGCCTGATTACTCTATGGATTTCA  292

Query  263  CAAAGATCAGAGAGATGAGGAAACTTAACAAGAGAGATGCTTCTCGAGCCAGTCTT-GGT  321
            | ||||| ||||||||||||||||  |||||||||||  |||||||||||||| || || 
Sbjct  293  CTAAGATTAGAGAGATGAGGAAACAAAACAAGAGAGACCCTTCTCGAGCCAGT-TTAGGC  351

Query  322  AATGAGGAAGAACTCATTAA  341
            ||||||||||| ||||||||
Sbjct  352  AATGAGGAAGAGCTCATTAA  371



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 36369522428


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5