BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496706
Length=1895
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64860.1 | Symbols: DPE1 | disproportionating enzyme | chr5:... 2728 0.0
> AT5G64860.1 | Symbols: DPE1 | disproportionating enzyme | chr5:25925173-25928848
REVERSE LENGTH=1991
Length=1991
Score = 2728 bits (1477), Expect = 0.0
Identities = 1785/1923 (93%), Gaps = 63/1923 (3%)
Strand=Plus/Plus
Query 1 GGAGTGGAGCTTTGAATT-GATGATCATTATCCATGTCGA-T-T-CTTA-G-C-TCG--- 50
|||||||||||||||||| ||||||||||||||||||||| | | |||| | | |||
Sbjct 28 GGAGTGGAGCTTTGAATTGGATGATCATTATCCATGTCGATTCTACTTAGGCCGTCGTCC 87
Query 51 TCTCCTTCACTCTGTTCTTCTCTCGTTCTTTTCCGATTATCCTCTCCGGTA-TCATT-AT 108
|||||||||||||||||||||||| |||||||||||||||||||||| | || || ||
Sbjct 88 TCTCCTTCACTCTGTTCTTCTCTCAAGCTTTTCCGATTATCCTCTCCGG-ATTCTTTAAT 146
Query 109 CGGACGCAGCTTTCCTCGGGAACAGGATAAAGCCGTCGCAGTCGTTTCGAATGGAGGCCG 168
| ||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 147 C-GACGCAGCTGTCCTCAGGAACAGGACAAAGCCGTCGCAGTCGTTTCGAATGGAGGTCG 205
Query 169 TTTCGAGTAATTCCACTTCTATTTCAT-GTATTAGCGTCGGTGAAGATTTTCCAGCAGAG 227
|||||||||||||||| | | |||| | |||||||||||||||||||||||||| ||||
Sbjct 206 TTTCGAGTAATTCCACGTGTCTTTC-TAGTATTAGCGTCGGTGAAGATTTTCCATCAGAA 264
Query 228 TATGAGCAGTGGCTGCCGGTTCCGGATCCAGAGAGCAGGAGAAGAGCTGGCGTTTTGCTC 287
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 265 TATGAGCAGTGGCTACCGGTTCCGGATCCAGAGAGCAGGAGAAGAGCTGGCGTTTTGCTA 324
Query 288 CATCCGACGTCGTTTCGCGGTCCTCATGGCATTGGTGATCTCGGAGAAGAAGCCTTCCGC 347
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 325 CACCCGACGTCGTTTCGTGGTCCTCATGGCATTGGTGATCTCGGAGAAGAAGCCTTCCGG 384
Query 348 TTCGTCGATTGGCTTCATTCTACTGGTTGCTCCGTTTGGCAGGTTCTTCCTCTGGTTCCA 407
||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 385 TTCATCGATTGGCTTCATTCTACTGGTTGCTCCGTTTGGCAGGTTCTTCCTCTTGTTCCT 444
Query 408 CCAGACGAAGGAGGATCTCCTTATGCAGGACAGGATGCAAATTGTGGGAACACATTGTTG 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CCAGACGAAGGAGGATCTCCTTATGCAGGACAGGATGCAAATTGTGGGAACACATTGTTG 504
Query 468 ATTTCTCTGGATGAGCTTGTCAAGGACGGCTTGCTAATGAAGGATGAGCTCCCACAACCA 527
|||||||| ||||||||||| || ||||||||| |||| |||||||||||||||||||||
Sbjct 505 ATTTCTCTAGATGAGCTTGTGAAAGACGGCTTGTTAATCAAGGATGAGCTCCCACAACCA 564
Query 528 ATTGATTCCGACTGTGTGAACTATCAAACTGCCAACAAGTTAAAGAGTCCCTTGATAACT 587
|||||| | |||| |||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 565 ATTGATGCTGACTCTGTGAACTATCAGACTGCCAACAAGTTAAAGAGTCCCTTGATTACG 624
Query 588 AAGTTCA-CAC-GA-----ATTCA-G-CAACT--T-ACTCTCATTTTCAAA--GCAA-A- 631
||| || || || ||| | | ||| | | | || | |||| || | |
Sbjct 625 AAGG-CAGCAAAGAGGCTTATTGATGGCAA-TGGTGAA-CTGAAGAGCAAACTGCTAGAT 681
Query 632 --C-G-A-C--CCC-TCTATATCATGTTGGCTTGAAGATGCTGCTTATTTTGCAGCTATT 683
| | | | ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 682 TTCCGTAACGACCCCTCTATATCATGTTGGCTTGAAGATGCTGCTTATTTTGCAGCTATT 741
Query 684 GACAATACTTTAAATGCAGACAGTTGGTTTGAATGGCCCGAACCGCTTAAAAACCGTCAT 743
|||||||||||||||||| ||||||||||||| ||||| ||||| |||||||||||||||
Sbjct 742 GACAATACTTTAAATGCATACAGTTGGTTTGAGTGGCCTGAACCACTTAAAAACCGTCAT 801
Query 744 CTTTCGGCCTTGGAAGCTATATATGAAAGCCAAAAGGAGTTTATAGACTTGTTCATTGCT 803
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 802 CTTTCTGCCTTGGAAGCTATATATGAAAGCCAAAAGGAGTTTATAGACTTGTTCATTGCT 861
Query 804 AAGCAATTTTTGTTCCAAAGGCAGTGGCAGAAAGTTCGTGAGTATGCACGGCAGCAAGGA 863
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 862 AAGCAATTTTTGTTCCAAAGGCAGTGGCAGAAAGTTCGTGAGTATGCACGGCGGCAAGGA 921
Query 864 GTTGATATAATGGGAGATATGCCCATTTATGTAGGATATCACAGTGCAGACGTTTGGGCA 923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 922 GTTGATATAATGGGAGATATGCCCATTTATGTAGGATATCACAGTGCAGACGTTTGGGCA 981
Query 924 AATAAGAAACATTTCTTACTGG-CAAG-----CTTTCCTCTTCTTGTTAGCGGTGTTCCT 977
||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 982 AATAAGAAACATTTCTTACTGAACAAGAAAGGCTTTCCTCTTCTTGTTAGCGGTGTTCCT 1041
Query 978 CCTGACTTGTTCAGTGAAACTGGTCAACTGTGGGGAAGCCCTCTTTATGACTGGAAAGCA 1037
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1042 CCTGACTTGTTCAGTGAAACTGGTCAACTGTGGGGCAGCCCTCTTTATGACTGGAAAGCA 1101
Query 1038 ATGGAGAGTGACCAATATTCTTGGTGGGTTAATCGAATACGACGTGCTCAAGACTTGTAT 1097
||||||||||||||||||||||||||||||||||||||| |||| || || |||||||||
Sbjct 1102 ATGGAGAGTGACCAATATTCTTGGTGGGTTAATCGAATAAGACGCGCACAGGACTTGTAT 1161
Query 1098 GACGAATGCAGGATTGATCATTTCAGAGGATTTGCAGGGTTTTGGGCGGTCCCTTCTGAA 1157
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1162 GACGAATGCAGGATTGATCACTTCAGAGGATTTGCAGGGTTTTGGGCGGTCCCTTCTGAA 1221
Query 1158 GCGAAAGTTGCCATGGTTGGACGATGGAAGGTAGGACCTGGAAAATCTTTATTTGATGCC 1217
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1222 GCGAAAGTTGCCATGGTTGGACGATGGAAGGTAGGACCTGGAAAGTCATTATTTGATGCC 1281
Query 1218 ATTTCCAGAGGCGTTGGGAAGATCAAAATCATAGCTGAAGATTTGGGAGTTATTACTAAA 1277
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1282 ATTTCCAAAGGCGTTGGGAAGATCAAAATCATAGCTGAAGATTTGGGAGTTATTACTAAA 1341
Query 1278 GATGTAGTTGAGCTGAGGAAATCTATAGGAGCGCCTGGAATGGCCGTCCTCCAATTTGCT 1337
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1342 GATGTAGTTGAGCTGAGGAAATCTATCGGAGCACCTGGAATGGCCGTCCTCCAATTTGCT 1401
Query 1338 TTTGGAGGCGGCGCGGATAACCCACATTTACCTCACAATCATGAAGTAAACCAAGTTGTA 1397
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1402 TTTGGAGGAGGCGCCGATAACCCACATTTACCTCACAATCATGAAGTAAACCAAGTTGTA 1461
Query 1398 TACTCTGGAACTCATGACAACGACACTATTCGAGGTTGGTGGGACACTCTGGACCAAGAA 1457
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1462 TACTCTGGAACTCATGACAACGACACTATTCGAGGCTGGTGGGACACTCTGGACCAAGAA 1521
Query 1458 GAAAAGTCTAAGGCAATGAAATACTTGTCGATAGCTGGAGAAGAAGATATATCATGGTCA 1517
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 1522 GAAAAGTCTAAGGCAATGAAATACCTGTCGATAGCTGGAGAAGACGATATATCATGGTCA 1581
Query 1518 GTGATCCAAGCTGCATTCTCTTCAACCGCTCAAACCGCAATCATACCGATGCAAGACATT 1577
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1582 GTCATCCAAGCTGCATTCTCTTCAACCGCTCAAACCGCAATCATACCGATGCAAGACATT 1641
Query 1578 CTAGGACTTGGAAGTTCTGCCAGGATGAACACTCCAGCCACTGAGGTGGGGAATTGGGGT 1637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1642 CTAGGACTTGGAAGTTCTGCCAGGATGAACACTCCAGCCACTGAGGTGGGGAATTGGGGT 1701
Query 1638 TGGAGGATTCCGAGTTCAACGAGCTTTGATAATCT-GAAAACTGAATCTGACAGACTCAG 1696
||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1702 TGGAGGATTCCAAGTTCAACGAGCTTTGATAATCTTGAAA-CTGAATCTGACAGACTCAG 1760
Query 1697 AGATCTTTTGTCATTGTACGGACGGCTTTGAGGAAACCTTTTGACGTGGAAGAGAAGAAG 1756
|||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||
Sbjct 1761 AGATCTTTTGTCATTGTACGGACGGCTTTGAGGAAAACATTTGACGTGGAAAAGAAGAAG 1820
Query 1757 AATCTTTCGTTTTCTT-T-TTTG--GTAACTTTGCTAATGGTAAAAAAGAAATAAAGTAA 1812
||||||| |||||||| | ||| ||||||||||||||||||||| | ||||||||||
Sbjct 1821 AATCTTTGGTTTTCTTATCTTTTTTGTAACTTTGCTAATGGTAAAA--GCAATAAAGTAA 1878
Query 1813 --AGAAGACGAGA-GAATCATGTTGTTGAAATAGTGGATCGATGTTGTCATATGGGCTAT 1869
||||||||| | ||| ||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1879 GCAGAAGACGA-ACGAAGCATGTTGTTGAAATAGTGGATCGATGTTG--ATATGGGCCAT 1935
Query 1870 ATA 1872
|||
Sbjct 1936 ATA 1938
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93824818605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5