BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496707
Length=1519
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64870.1 | Symbols: | SPFH/Band 7/PHB domain-containing mem... 2429 0.0
AT5G25250.1 | Symbols: | SPFH/Band 7/PHB domain-containing mem... 1214 0.0
> AT5G64870.1 | Symbols: | SPFH/Band 7/PHB domain-containing membrane-associated
protein family | chr5:25929538-25931384 REVERSE
LENGTH=1754
Length=1754
Score = 2429 bits (1315), Expect = 0.0
Identities = 1459/1528 (95%), Gaps = 11/1528 (1%)
Strand=Plus/Plus
Query 1 CACAAACAAACTCGTATC-AGAAAAATCCCTAAATCTCAACAAAACCCTAATTTC----A 55
|||||||||||| ||| | |||||||||||||||||||||||||||||||||||| |
Sbjct 5 CACAAACAAACTTGTA-CTAGAAAAATCCCTAAATCTCAACAAAACCCTAATTTCAAGGA 63
Query 56 A-A-GAAG-AAGAATGAGTTACAGAGTCGCTAAAGCATCGCAGTATCTTGCGATCACCGG 112
| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 AGACGAAGAAAGAATGAGTTACAGAGTCGCTAAAGCATCGCAGTATCTTGCGATCACCGG 123
Query 113 TGGTGGAATCACAGACATCAAGCTTGCCAAGAAGTCATGGGTGTTTCCATGGCAGTCTTG 172
|||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 124 TGGTGGGATCACAGACATCAAGCTTGCAAAGAAGTCTTGGGTGTTTCCATGGCAGTCTTG 183
Query 173 CACCGTCTTCGACGTTTCTCCCGTGAACTACACGTTTGAGGTTCAAGCTATGAGTTCCGA 232
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 184 CACCGTCTTCGACGTTTCTCCGGTGAACTACACGTTCGAGGTTCAAGCTATGAGTTCCGA 243
Query 233 GAAACTTCCCTTTGTTATTCCGGCGGTTTTCACAATCGGCCCTCGCGTTGATGACCCTCA 292
||||||||||||||||||||| || |||||||||||||| |||||||||||||| |||||
Sbjct 244 GAAACTTCCCTTTGTTATTCCTGCTGTTTTCACAATCGGTCCTCGCGTTGATGATCCTCA 303
Query 293 CGCTCTCTTGTTGTACGCCATGCTTATGTCTCAACACGATAAGCACTCGAATCACGTCAA 352
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 CGCTCTCTTGTTGTATGCCATGCTTATGTCTCAACACGATAAGCACTCGAATCACGTCAA 363
Query 353 TGAGCTTGTTCAGGGTGTTATCGAAGGAGAGACTCGTGTTCTTGTTGCTGCCATGACTAT 412
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 364 TGAGCTTGTTCAGGGTGTTATCGAAGGAGAGACTCGTGTTCTTGTTGCTTCCATGACTAT 423
Query 413 GGAAGAGGTCTTCAAAGGAACAAAGGAGTTCAAGAAGGAAGTGTTTGACAAGGTTCAACT 472
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 424 GGAAGAGGTCTTCAAAGGAACAAAGGAGTTTAAGAAGGAAGTGTTTGACAAGGTTCAGCT 483
Query 473 AGAGCTAAACCAGTTTGGTCTTGTTATCTACAACGCCAATGTGAAGCAGCTTGTTGATGT 532
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 484 AGAGCTAAACCAGTTTGGTCTTGTGATCTACAACGCCAATGTGAAGCAGCTTGTTGATGT 543
Query 533 GCCTGGACATGAATACTTCTCTTACTTGGGCCAGAAAACTCAGATGGAAGCAGCAAACCA 592
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 544 GCCTGGACATGAGTACTTCTCTTACTTGGGCCAGAAGACTCAGATGGAAGCAGCAAACCA 603
Query 593 AGCCAAGATCGATGTAGCAGAGGCAAAGATGAAGGGAGAGGTTGGTGCCAAAGAACGGAA 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 604 AGCCAAGATCGATGTAGCAGAGGCAAAGATGAAGGGAGAGGTTGGTGCCAAAGAAAGGA- 662
Query 653 C-GGACTCACAATCCAGAATGCAGCCAAGATTGACGCTGAGTCAAAGATCATCTCCACTC 711
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 663 CTGGACTCACAATCCAGAATGCAGCCAAGATTGACGCTGAGTCAAAGATCATCTCTACTC 722
Query 712 AGAGGCTAGGAGAAGGGACAAAAGAGGAGATCAAGGTGAAGACTGAAGTCAAAGTGTTTC 771
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 AAAGGCTAGGAGAAGGGACAAAAGAGGAGATCAAGGTGAAGACTGAAGTCAAAGTGTTTC 782
Query 772 AGAATGAGAAAGAGGCTCTTGTTGCTAAGGCTGATGCAGCACTGGCGATTCAAAAGGCTG 831
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 783 AGAATGAGAAAGAGGCTCTTGTTGCTAAGGCTGATGCAGCACTTGCGATTCAAAAGGCTG 842
Query 832 CTTTGTCCCAAAACTCTCGTGTGGCTGAGGTTGAAGCATCCAAGGCTGTTGCTTTGAGGG 891
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 843 CTTTGTCCCAAAACTCTCGTGTGGCTGAGGTTGAAGCAGCCAAGGCTGTTGCTTTGAGGG 902
Query 892 AAGCTGAGCTTCAGACTAAAGTCGAGAAAATGAATGCATTGACTCGGACAGAGAAGCTTA 951
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 903 AAGCTGAGCTTCAGACTAAAGTAGAGAAGATGAATGCATTGACTCGGACAGAGAAGCTTA 962
Query 952 AAGCTGAGTTCCTCAGTAAAGCCAGTGTTGAGTATGAAACTAAGGTGCAAGAAGCTAACT 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 963 AAGCTGAGTTCCTCAGTAAAGCCAGTGTTGAGTATGAAACTAAGGTGCAAGAAGCGAACT 1022
Query 1012 GGGAGTTATACAATAAGCAAAAGCAAGCAGAAGCTGTTCTTTACGAGAAGCAGAAGCAAG 1071
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 GGGAGTTGTACAATAAGCAAAAGCAAGCAGAAGCTGTTCTTTACGAGAAGCAGAAGCAAG 1082
Query 1072 CGGAGGCGATGAAAGCAGCAGCTGATGCTGCCTTCTATTCTAAACAGAAAGATGCAGAGG 1131
|||| |||| |||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1083 CGGAAGCGACGAAAGCTGCAGCTGATGCTGCCTTCTATTCAAAACAGAAAGATGCAGAGG 1142
Query 1132 GGCTTGTGGCAATGGCCGAAGCTCAGGGGAAATATCTCAAGACCCTCTTAGGCGCAGTTA 1191
| ||||| ||||||||||| |||||||||| || |||||||||||||||||||||||||
Sbjct 1143 GACTTGTCGCAATGGCCGATGCTCAGGGGACTTACCTCAAGACCCTCTTAGGCGCAGTTA 1202
Query 1192 ACAATGATTACTCATCCATGAGGGACTTCTTGATGATCAACAATGGCATTTATCAAGAAA 1251
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||| || |
Sbjct 1203 ACAATGATTACTCAGCCATGAGAGACTTCTTGATGATCAACAATGGCATTTATCAGGATA 1262
Query 1252 TCGCCAAAACCAATGCTCTGGCTATCAAGGACCTGCAGCCTAAGATCAGTGTGTGGAACC 1311
| ||||| ||||||||| | || |||| ||||||||||||||||||||| ||||||||||
Sbjct 1263 TTGCCAAGACCAATGCTGTTGCGATCAGGGACCTGCAGCCTAAGATCAGCGTGTGGAACC 1322
Query 1312 ATGGTGGTGCCGAGCAGGGGATGAACGGTGGTGGTAAAGGTCCGATGAACGATATTGCTG 1371
|||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1323 ATGGTGGTGCTGAGCAGGGGATGAACGGTGGTGGTAAAGCTACGATGAACGATATTGCTG 1382
Query 1372 GACTATACAAGATGTTGCCACCGGTTCTTGACACGGTTTATGAGCAGACCGGGATGCAGC 1431
|||| ||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1383 GACTCTACAAGATGTTACCACCGGTTCTTGATACGGTTTATGAGCAGACAGGGATGCAGC 1442
Query 1432 CACCAGCTTGGATTGGTACACTACGTGGTGCTGAGCCCAAACAATCACTTCAGGCTCAAC 1491
|||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||
Sbjct 1443 CACCAGCTTGGATTGGTACATTGCGTGGTGCTGAGCCCAAACAATCACTTCATGCTCAAC 1502
Query 1492 AACACAGAGGTTGAGATCTCAAGTGTTG 1519
|||||||||||||||||||||| |||||
Sbjct 1503 AACACAGAGGTTGAGATCTCAAATGTTG 1530
> AT5G25250.1 | Symbols: | SPFH/Band 7/PHB domain-containing membrane-associated
protein family | chr5:8749727-8751636 FORWARD
LENGTH=1666
Length=1666
Score = 1214 bits (657), Expect = 0.0
Identities = 1179/1427 (83%), Gaps = 52/1427 (4%)
Strand=Plus/Plus
Query 70 GTTACAGAGTCGCTAA-AGCATCGCAGTATCTT-GCGATCACCGGTGGTGGAATC-ACAG 126
||| || ||| || || ||| || |||||| || ||||||||||||| ||| ||| | ||
Sbjct 50 GTT-CAAAGTTGC-AAGAGCGTCACAGTAT-TTGGCGATCACCGGTGCTGGTATCGA-AG 105
Query 127 ACATCAAGCTTGCCAAGAAGTCATGGGTGTTTCCATGGCAGTCTTGCACCGTCTTCGACG 186
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 106 ACATCAAGCTTTCCAAGAAGTCATGGGTGTTTCCATGGCAATCTTGCACCGTCTTCGACG 165
Query 187 TTTCTCCCGTGAACTACACGTTT-GAGGTTCAAGCTATGAGTTCCGAGAAACTTCCCTTT 245
||||||| |||||||| || ||| | || ||||| ||||| | ||||| ||||| |||
Sbjct 166 TTTCTCCGGTGAACTATAC-TTTCAAAGTCCAAGCCATGAGCGCAGAGAAGCTTCCTTTT 224
Query 246 GTTATTCCGGCGGTTTTCACAATCGGCCCTCGCGTTGATGACCCTCACGCTCT-CTTGTT 304
||| |||| || ||||| || || || ||||||||||||||| | |||| || || ||
Sbjct 225 GTTCTTCCCGCTGTTTTTACGATTGGTCCTCGCGTTGATGACGATGACGCGCTGATT-TT 283
Query 305 GTACGCCATGCTT-ATGTCTCAACACGAT-AAGCACTCGAATCACGTCAATGAGCTTGTT 362
||| || | | || || |||| || ||| ||| | || ||||| ||| |||||||||||
Sbjct 284 GTATGCTA-GGTTGATTTCTCCTCATGATAAAG-ATTCAAATCATGTCCATGAGCTTGTT 341
Query 363 CAGGGTGTTATCGAAGGAGAGACTCGTGTTCTTGTTGCTGCCATGACTATGGAAGAGGTC 422
| |||||||| |||||||||||||||||||||| |||| ||||||||||||||||| ||
Sbjct 342 GAAGGTGTTATTGAAGGAGAGACTCGTGTTCTTGCTGCTTCCATGACTATGGAAGAGATC 401
Query 423 TTCAAAGGAACAAAGGAGTTCAAGAAGGAAGTGTTTGACAAGGTTCAACTAGAGCTAAAC 482
|| ||||| ||||||||||| |||||||| |||||||| |||||||||||||| |||||
Sbjct 402 TTTAAAGGGACAAAGGAGTTTAAGAAGGAGGTGTTTGATAAGGTTCAACTAGAATTAAAC 461
Query 483 CAGTTTGGTCTTGTTATCTACAACGCCAATGTGAAGCAGCTTGTTGATGTGCCTGGACAT 542
|||||||||||||| || ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 462 CAGTTTGGTCTTGTGATATACAATGCCAATGTGAAGCAGCTCGTTGATGTGCCTGGACAT 521
Query 543 GAATACTTCTCTTACTTGGGCCAGAAAACTCAGATGGAAGCAGCAAACCAAGCCAAGATC 602
|||||||||||||||||||| ||||| ||||| |||||||||||||| || || | ||||
Sbjct 522 GAATACTTCTCTTACTTGGGTCAGAAGACTCAAATGGAAGCAGCAAATCAGGCTAGGATC 581
Query 603 GATGTAGCAGAGGCAAAGATGAAGGGAGAGGTTGGTGCCAAAGAACGGAAC-GGACTCAC 661
||||| | ||||| ||||||||||||||| | |||||||| ||||||| | || || ||
Sbjct 582 GATGTCTCTGAGGCCAAGATGAAGGGAGAGATCGGTGCCAAGGAACGGA-CTGGTCTTAC 640
Query 662 AATCCAGAATGCAGCCAAGATTGACGCTGAGTCAAAGATCATCTCCACT-CAGAGGCTAG 720
||||||| |||||||| ||||||||||||||||||||||| || | | ||||||| ||
Sbjct 641 TCTCCAGAACGCAGCCAAAATTGACGCTGAGTCAAAGATCATATCGA-TGCAGAGGCAAG 699
Query 721 GAGAAGGGACAAAAGAGGAGATCAAGGTGAAGACTGAAGTCAAAGTGTTTCAGAATGAGA 780
||||||| |||||||| || ||||| |||| |||||| || ||||||||| ||||| |||
Sbjct 700 GAGAAGGAACAAAAGAAGAAATCAAAGTGAGGACTGAGGTTAAAGTGTTTGAGAATCAGA 759
Query 781 AAGAGGCTCTTGTTGCTAAGGCTGATGCAGCA-CTGGCGATTCAAAAGGCTGCTTTGTCC 839
| |||||| ||| |||||||| |||| | | || ||||| |||| ||||||| | |
Sbjct 760 AGGAGGCTGATGTAGCTAAGGCCAATGCCG-AGCTTGCGATGAAAAAAGCTGCTTGGACT 818
Query 840 CAAA-ACT-CTC-GTGTGGCTGAGGTTGAAGCATCCAAGGCTGTTGCTTTGAGGGAAGCT 896
|| | | ||| | |||||||||||||||||| ||||||| || |||||||| ||||||
Sbjct 819 -AAGGA-TGCTCAG-GTGGCTGAGGTTGAAGCAACCAAGGCCGTGGCTTTGAGAGAAGCT 875
Query 897 GAGCTTCAGACTAAAGTCGAGAAAATGAATGCATTGACTCGGACAGAGAAGCTTAAAGCT 956
|||||||||||| | |||||||||||||| || |||||||| ||||||||||| || |||
Sbjct 876 GAGCTTCAGACTCAGGTCGAGAAAATGAACGCTTTGACTCGAACAGAGAAGCTCAAGGCT 935
Query 957 GAGTTCCTCAGTAAAGCCAGTGTTGAGTATGAAACTAAGGTGCAAGAAGCTAACTGGGAG 1016
|||||||| || ||||| ||||||||||||||||| ||||| |||||||| || |||||
Sbjct 936 GAGTTCCTTAGCAAAGCTAGTGTTGAGTATGAAACCAAGGTTCAAGAAGCAAATTGGGAA 995
Query 1017 TTATACAATAAGCA-AAAGCAAGCAGAAGCTGTTCTTTACGAGAAGCAGAAGCAAGCGGA 1075
||||||| ||||| ||| |||||||| || ||||| |||||||| || |||||||| ||
Sbjct 996 CTATACAACAAGCAGAAA-CAAGCAGAGGCGGTTCTATACGAGAAACAAAAGCAAGCCGA 1054
Query 1076 GGCG-ATGAAAGCAGCA-GCTGATGCTGCCTTCTATTCTAAA-CAGAAAGATGCAGAGGG 1132
||| | |||||| ||| || ||||| || ||||| || ||| |||||||| ||||||||
Sbjct 1055 GGCACA-GAAAGC-GCAAGCGGATGCGGCTTTCTACTC-AAAGCAGAAAGAAGCAGAGGG 1111
Query 1133 GCTTGTGGCAATGGCC-GAAGCTCAGGGGAAATATCTCAAGA-CCCTCTTAGGCGCAGTT 1190
||||| || | || | || || |||| ||||| |||| ||||||||| ||| |||
Sbjct 1112 ACTTGTTGCCTTAGCTAGT-GCGCAAGGGACTTATCT-AAGAACCCTCTTAGACGCTGTT 1169
Query 1191 AACAATGATTACTCATC-CATGAGGGACTTCTTGATGATCAACAATGGCATTTATCAAGA 1249
| ||||| || || | | | || |||||||||||||| |||||||| |||||||||||
Sbjct 1170 CAGAATGACTATTCTTGTCTT-AGAGACTTCTTGATGATTAACAATGGTATTTATCAAGA 1228
Query 1250 AATCGCCAAAACCAATGCTCTGGCTATCA-AGGACCTGCAGCCTAAGATCAGTGTGTGGA 1308
||||| || || ||||| |||| | | || || ||||||| ||||| ||||| ||||
Sbjct 1229 GATCGCTAAGACTAATGCGATGGCGGTTAGAG-ACTTGCAGCCCAAGATTAGTGTTTGGA 1287
Query 1309 ACCATGGTGGTGCCGAGCAGGGGATGAACGGTGGTGGTAAAGGTCCGATGAACGATATTG 1368
|||||||||| | | ||||| || ||| |||| || | | ||||| ||||| |
Sbjct 1288 ACCATGGTGGAGA--A-CAGGG--TGGT-GGTAGTGGGAATGCT---ATGAAGGATATAG 1338
Query 1369 CTGGACTATACAAGATGTTGCCACCGGTTCTTGACACGGTTTATGAGCAGACCGGGATGC 1428
||||||| |||||||||||||| ||||||||||| ||||||||||||||||| |||||||
Sbjct 1339 CTGGACTTTACAAGATGTTGCCTCCGGTTCTTGATACGGTTTATGAGCAGACTGGGATGC 1398
Query 1429 AGCCACCAGCTTGGATTGGTACACTACGTGGTGCTGAGCCCAAACAA 1475
||||||| |||||||| ||||| ||||||||||| || || || |||
Sbjct 1399 AGCCACCTGCTTGGATCGGTACTCTACGTGGTGCGGAACCGAAGCAA 1445
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74949413685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5