BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496708
Length=791
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64880.1 | Symbols: | unknown protein; Has 30201 Blast hits... 1031 0.0
> AT5G64880.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:25932290-25934156
FORWARD LENGTH=861
Length=861
Score = 1031 bits (558), Expect = 0.0
Identities = 683/741 (92%), Gaps = 18/741 (2%)
Strand=Plus/Plus
Query 41 aaaaaaTGGTAGATTCCGGGAAAGAGTTTTTGATGTTAGATAGCTACAATAGTATCCCAT 100
|||||||||| ||||| ||||||||||||||| | |||||||||||||||| ||||||||
Sbjct 59 AAAAAATGGTGGATTCTGGGAAAGAGTTTTTGGTTTTAGATAGCTACAATAATATCCCAT 118
Query 101 GGTTAATTTGGATCCAAATGTTCGTCTTCGTCCTCCTCTTACTCCTCCTTTGCGTCGTCG 160
|| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||
Sbjct 119 GGCTAATTTGGATCCAAATGTTGGTCTTCGTCCTCCTCTTACTCCTTCTTTGCGTCATCG 178
Query 161 GGATCTTCTCCTTAGATATCGGAGATAACAATTGCTCATCTTCTGATTCTGTTCCTTCTA 220
| || |||||||| ||||||| |||||||| | ||| ||||||||||||||||||||||
Sbjct 179 GAATATTCTCCTTTGATATCGTAGATAACAGCTACTCGTCTTCTGATTCTGTTCCTTCTA 238
Query 221 CCTCCGGCTCATCTCTTTCTAAACGATTTCTTTCTGGAACTCCGATTCCGATCAGCCACC 280
|||| || |||||||| ||||| |||||||||||||||| ||||||||||||||| ||||
Sbjct 239 CCTCTGGTTCATCTCTCTCTAAGCGATTTCTTTCTGGAAATCCGATTCCGATCAGTCACC 298
Query 281 ATGGTTTGGGGTTTTCCGTCAATTCAAGTCTCGTACAGTCTCACCAGATTGGAAGCTCTC 340
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 299 ATGGTTTGGGGTTTTCCGTCAATTCAAGTCTCGTACAGTCTCATCAGGTTGGAAGCTCTC 358
Query 341 AAAGCATAAAAGGAGAGATAACACCAGCTGTAACAAGGAGAGTGACAA--G-AACAGAGG 397
||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||
Sbjct 359 AAAGCATAAAAGGAGAGATAACACCAGCTGTAACAAGGAGAGTCACAACAGTAACAGAGG 418
Query 398 AAGCAGAAGGTTCGTTGGACAAAGATTCAAGTCATAGTTTGCATCATCCATGTACTTTGT 457
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 419 AAGGAGAAGGTTCGTTGGAGAAAGATTCAAGTCATAGTTTGCATCATCCATGTACTTTGT 478
Query 458 TTAGGCTGGCAGGATCTGCATTTCTAAAGTGTTTCGGGATTGACCGGAGTACCGAAGAAG 517
|||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 479 TTAGGCTGGCTGGATCTGCATTTCTTAAGTGTTTCGGGATTGACCGGAGTACTGAAGAA- 537
Query 518 ATACCGAGGATTCATTGAGACAAGAATCTAAGAAAGAGAGATGATTGAAGCTCTTTGTGA 577
| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 538 A--CCGAGGATTCTTTGAGACAAGAATCTAAGAAAGAGAGATGATTGAAGCTCTT-GTGA 594
Query 578 ATAGAAGAAGAGAGAACAT-ACTATAACACGTTTTTATTATGTGTTGATCGTAGCAATCG 636
||||| ||||||||||||| |||| | ||||||||||||||||||| |||||||| ||||
Sbjct 595 ATAGA-GAAGAGAGAACATTACTA-A-CACGTTTTTATTATGTGTTTATCGTAGCTATCG 651
Query 637 AGTAGGAAGAGATTGAAGAAATTTGTAAAGTAGTACTAATGAAAAAGGTGAAATTGTTGG 696
||||||||||||||||||||| |||||| ||| || | |||||| ||||||||||||||
Sbjct 652 AGTAGGAAGAGATTGAAGAAACTTGTAA-GTA-TAG-A-TGAAAA-GGTGAAATTGTTGG 706
Query 697 GGTAACACGAACGAGTTGACTCAACGCATTCG-ttttttctttttACGTGAAATCGATAT 755
||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||
Sbjct 707 TGTAACACGAACGAGTTGACTCAACGCATTCGCTTTTTTCTTTTTGCGTGAAAACGATAT 766
Query 756 TGTCACTATGGTTAAATATAT 776
||||||| ||||||||| |||
Sbjct 767 TGTCACTGTGGTTAAAT-TAT 786
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38479356602
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5