BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496712
Length=1829
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64930.1 | Symbols: CPR5, HYS1 | CPR5 protein, putative | ch... 2333 0.0
> AT5G64930.1 | Symbols: CPR5, HYS1 | CPR5 protein, putative |
chr5:25945712-25948341 REVERSE LENGTH=1888
Length=1888
Score = 2333 bits (1263), Expect = 0.0
Identities = 1679/1871 (90%), Gaps = 64/1871 (3%)
Strand=Plus/Plus
Query 1 ATGGAAGCCCTCCTCCTCGCTCCTTCGCCGGAACCCCAAAATCCCATCACCGATCCGGCG 60
|||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||
Sbjct 21 ATGGAAGCCCTCCTCCTCCCTCCTTCGCCGGAACCCCAAAATCAAATCACCAATCCGGCG 80
Query 61 AATTCAAAGCCTAATCATCAATCTGACGACAAACACAAAGATGAGACGATga--a-gaag 117
||||||||||| ||||||||||||| ||| ||| |||||||||||||||| | ||||
Sbjct 81 AATTCAAAGCCAAATCATCAATCTGGTGACGTACATAAAGATGAGACGATGATGATGAAG 140
Query 118 aagaagaagaaaacgaatccatcgaatttggaaaagagaaaactcaagggaaagaagaaa 177
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 AAGAAGAAGGATACGAATCCATCGAATTTGGAAAAGAGAAAACTCAAGGGAAAGAAGAAA 200
Query 178 gagaTTATGAACAACGACGAAGCTTCATCTTCCTCA-TGTTCCACATCTTCTACCTCTAA 236
||||||||| |||||||||||||||| || |||| | ||||| |||||||||||||||||
Sbjct 201 GAGATTATGGACAACGACGAAGCTTCTTCGTCCT-ATTGTTCTACATCTTCTACCTCTAA 259
Query 237 CCCCAATTCTACTAAAAGGGTTACGAGAGTGGTTCATAGATTACGAAACCCTACGGTGCG 296
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 260 TTCAAATTCTACTAAAAGGGTTACGAGAGTGGTTCATAGATTACGAAACCCTA---TGCG 316
Query 297 TTTAGGGATGGCTCGACGAAGCGTTGGTGAACGACAAGCTGAAGCCTTAGCCAAGCCTCT 356
||||| |||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 317 GTTAGGTATGGCTCGACGAAGCGTTGGTGAACGACAAGCTGAAAAATTGGCGAAGCCTCT 376
Query 357 GGGCTTTTCATTTGCGGCTTTAGCTAATCTGGTTCTTGCGAGAAAGAATGCCGCGGGTCA 416
|||||||||| |||| ||||| |||||| ||||| ||||||||||||||||||| |||||
Sbjct 377 GGGCTTTTCACTTGCCGCTTTTGCTAATATGGTTATTGCGAGAAAGAATGCCGCAGGTCA 436
Query 417 GAATGTTTATGTTGATGATCTTGCTGAGATCTCTGCTACCGC-TGTC-ACAGAATCATTA 474
||||||||||||||||||||||| |||||||| ||||| | | |||| | ||||||||||
Sbjct 437 GAATGTTTATGTTGATGATCTTGTTGAGATCTTTGCTA-CTCTTGTCGA-AGAATCATTA 494
Query 475 GCCAATGTTTATGGTAATAAGCTTGGTTCCTTTGCGACCAACTTTGAGCAATCATTCAAC 534
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 495 GCCAATGTTTATGGTAATAAGCTTGGTTCCTTTGCGACCAACTTTGAGCAAACATTCAGC 554
Query 535 AGTACTCTAAAGATCCTTAAATTGACCAATGAATGTGCAAATCCACATCAGTTAAACAAT 594
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 555 AGTACTCTAAAGATCCTTAAATTGACCAATGAATGTGCAAATCCACATCAGTCAAACAAT 614
Query 595 AATGATGTTAGGAGTTGTAATTTAGATTGCTCTACAATAGACGGATGCTCGGACACCGAG 654
||||||| | ||||||||||||||||| ||||||| |||||||||||||| |||||||||
Sbjct 615 AATGATGGTGGGAGTTGTAATTTAGATCGCTCTACCATAGACGGATGCTCAGACACCGAG 674
Query 655 ---TTTGAAAAGGAGACTTCATCTGCTACGTCTGCTTATGAAGTGATACAAGGCAGTGCA 711
||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 675 CTATTTGAGAGGGAGACTTCATCTGCTACGTCTGCTTATGAAGTGATGCAAGGCAGTGCA 734
Query 712 AGAGCAACCTCTTTGGTGAATGAGCTTGTCCTGTACGAACAGACTCGACAACTCTCTTGT 771
| ||||||||||||| |||||||||||| ||| | |||| |||||| |||||||||||||
Sbjct 735 ACAGCAACCTCTTTGATGAATGAGCTTGCCCTTTTCGAAGAGACTCTACAACTCTCTTGT 794
Query 772 GTCCTTCCTAGCAGTTCATCAATGTCTTTGACCACATTCGATAGATCTGTAGAAGAGCTA 831
|||| |||||| |||||| ||||| ||||||||||| ||| || | | || |||||| |
Sbjct 795 GTCCCTCCTAGAAGTTCAGCAATGGCTTTGACCACAGACGAAAGGTTTTTAAAAGAGC-A 853
Query 832 AA-ACGAGCAAACGACCTAAAGTCCGAGGAGAATGGTCTTAC-AAGGAGAAAGTTAATGT 889
|| ||||||||||||||||||| ||| ||||| ||||||| | || ||| |||||| |
Sbjct 854 AACACGAGCAAACGACCTAAAGACCGTGGAGATTGGTCTT-CAAATAAGAGAGTTAA-GG 911
Query 890 TG-AAGGAGATGGATCTATCATTAAAATACGAATCAAACAATCTGGGGAAATCGAAGCTA 948
|| || |||| || ||| |||||||| ||||||||||| ||||||||| || ||||
Sbjct 912 TGCAAAGAGACGGCGCTAGGATTAAAATTTGAATCAAACAACCTGGGGAAAGCGGCGCTA 971
Query 949 GAGATGGATGGTTT-GAAAGCTGCATTCAGAGCGGAGAAATTCAAAACCGAATTAGAAGA 1007
||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 972 GAGTTGGAT-GTTTCGAAAGCTGCATTCAGAGCGGAGAAATTCAAAACCGAATTAGAAGA 1030
Query 1008 TACAAGAAAAGCCGAGATGGTCACAAGGATCATGGATTGGCTCGTCGTAAGTGTCTGT-A 1066
||||||||||| |||||||||||||| ||||||||||||||| |||||||||||| | |
Sbjct 1031 TACAAGAAAAGAAGAGATGGTCACAAGAATCATGGATTGGCTCCTCGTAAGTGTCT-TCA 1089
Query 1067 GCATGTTGGCTTCTATGTTACTTGGCGTTTACAATTTTTCACA-AAAGAGAATCAAGGAC 1125
||||||||||||||||| ||||||||||||||||||||||| | |||||||||| ||||
Sbjct 1090 GCATGTTGGCTTCTATGGTACTTGGCGTTTACAATTTTTCA-ATAAAGAGAATCGAGGAT 1148
Query 1126 GCAACCTCAGTATGCGAGCC-ATCCGAGGAGAAAAGTTCATCGTGGTGGGTTCCTAAACA 1184
|| |||||||||||||| || |||||||||||||||||| ||||||||||||||||||||
Sbjct 1149 GCTACCTCAGTATGCGA-CCAATCCGAGGAGAAAAGTTCGTCGTGGTGGGTTCCTAAACA 1207
Query 1185 AGTTTCATTGATGAACTCAGGCTTCAACATCTTCATCTGCCGGGTTCGAGTTTGGGTGCA 1244
|||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1208 AGTTTCATCGATTAACTCAGGCTTCAACACCTTCATCTGCCGGGTTCGAGTTTGGGTGCA 1267
Query 1245 GATCTTTTTCGGTGTCTTAATGATCATTGTCTTCACATACTTTATAAGCAAACGCTCAGC 1304
||| ||||||||||| |||||||||||||||||||| |||||| ||| |||||| ||| |
Sbjct 1268 GATATTTTTCGGTGTGTTAATGATCATTGTCTTCACTTACTTTCTAAACAAACGATCATC 1327
Query 1305 AGGTACGAAGCAGACAATGCCGATAAGTTTCATCGTTCTTTTCCTCGGTATATTTTGCGG 1364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1328 AGGTACGAAGCAGACAATGCCGATAAGTTTCATCGTTCTTTTCCTCGGTATATTTTGCGG 1387
Query 1365 TATATCGGGTAAGTTGTGTGTGGACACACTGGGCGGTAACGGCAAACTCTGGCTAATTGT 1424
| |||||||||| ||||||||||||||| |||||||| | ||||||||||||||||| ||
Sbjct 1388 TGTATCGGGTAAATTGTGTGTGGACACATTGGGCGGTGATGGCAAACTCTGGCTAATAGT 1447
Query 1425 TTGGGAAGTGTTTTGCCTTTTCCAATTCGTTGCAAATGTCTTCGCATTGGCTTTGTATAG 1484
||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
Sbjct 1448 TTGGGAAGTGTTTTGCCTTTTGCAATTCGTTGCAAATGTCTTCACATTGGCTTTGTATGG 1507
Query 1485 TCTAATGTTCGGTCGTATAAACGTGACTCAAT---C--GA--G--CCGTTGTAACAGTAT 1535
|||||||||||||| |||||||||||||||| | || | |||||||||||||||
Sbjct 1508 TCTAATGTTCGGTCCTATAAACGTGACTCAAGAGACCAGATCGAACCGTTGTAACAGTAT 1567
Query 1536 GTTTCCATATTGGGCAAGGCGCAGTGTCTTGTATGTGGTGATTCTGTTTGTTCTTCCAGC 1595
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1568 GTTTCCATATTGGGCAAGGCGCAGTGTCGTGTATGTGGTGATTCTGTTTGTTCTTCCAGT 1627
Query 1596 CATAAACGGTCTTTTGCCATTTGCGACATTTGGTGAATGGAGAGACCTCGCTATGTATCA 1655
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1628 CATAAACGGTCTTTTGCCATTTGCAACATTTGGTGAATGGAGAGACTTCGCTATGTATCA 1687
Query 1656 GTTTCTTGGTGGGT-TAGACTC--CT-GA-A-G-GC---CC-TCTTTGTATTGTAACTTA 1704
||| |||||||| | |||| || || | | | || |||||||||||||| |||
Sbjct 1688 CCTTCATGGTGGGTCT-GACTATGCTTGAGACGAGGAGGCCATCTTTGTATTGTAATTTA 1746
Query 1705 TTGTAACGATTTGGtttttttAATCCTATTTTATTGTATGGGTGCTGTTGAAACAATTGT 1764
|||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 1747 TTGTAACGATTTGGGTTTTTTAATCTTATTTTATTTTATGGGTGCTGTTGAAACAATTGT 1806
Query 1765 ATGGCTATTACAAAGTTTATGTATAATGTATTCGAGTTATAT-T--GT-T-GTTGTCAAA 1819
|| |||||||||||||| |||||| | |||||||||| | || | |||||||||
Sbjct 1807 ATCGCTATTACAAAGTT-ATGTAT--T-----CGAGTTATATGTTTGTATTGTTGTCAAA 1858
Query 1820 AGAAAT-AAAA 1829
|||||| ||||
Sbjct 1859 AGAAATTAAAA 1869
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90511582635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5