BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496718
Length=1129
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64980.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1543 0.0
> AT5G64980.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G02880.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:25960775-25963235 REVERSE LENGTH=1263
Length=1263
Score = 1543 bits (835), Expect = 0.0
Identities = 1043/1140 (91%), Gaps = 28/1140 (2%)
Strand=Plus/Plus
Query 4 ATTTCCGGTGATGGGTTTCAGATCGGTGTATCAATCTCTCGCCGAGTTATTTCCACAGAT 63
|||||| ||||||||||| |||||||| |||||||||||| | |||||||||||||||||
Sbjct 47 ATTTCCAGTGATGGGTTTTAGATCGGTTTATCAATCTCTCACGGAGTTATTTCCACAGAT 106
Query 64 TGATCCAAAGATTCTAAGAGGTGTTGCAATTGAGCACCAACATGATGCTGATGAAGCTGC 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 107 TGATCCAAAGATTCTAAGAGGTGTTGCAATTGAGCACCAACATGATGCTGATGAAGCTGC 166
Query 124 TTCTCTTGTTATTTCTGAGATTTTTCCTTTCTCTTCCCCTAATTCCACTCAACCCCGCAA 183
||| ||||||| ||||||||||| |||||||||||||| |||||||||||||| | |||
Sbjct 167 CTCTGTTGTTATCTCTGAGATTTTCCCTTTCTCTTCCCCAAATTCCACTCAACCTCACAA 226
Query 184 CAAGAACAAGACCAAGATCTCTGATAATCCCCCTAACTTGAAAGTAGAAGGTGACGATGG 243
|||||||||||||||| | || || ||||||||||||||||||||| || ||||||||||
Sbjct 227 CAAGAACAAGACCAAGGTTTCCGACAATCCCCCTAACTTGAAAGTAAAATGTGACGATGG 286
Query 244 GAGTTTGTCTCTGTCTCAATGGCTTCAACCATCTAAGCTTCCACATAGTTACCTTGCTTT 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 287 GAGTTTGTCTCTGTCTCAATGGCTTCAACCATCTAAGCTTCCACATAGTTACCTTGCTTT 346
Query 304 GCTCAACGAAGAATCTACACCTGATGTCAAACCTCCTCCCGATTACGTTGTTGAGAAAGT 363
|||||||||||| |||||||||||||| |||||||||| ||||||||| || ||||||||
Sbjct 347 GCTCAACGAAGATTCTACACCTGATGTTAAACCTCCTCTCGATTACGTCGTGGAGAAAGT 406
Query 364 GGTTCTGCCTAGTCGTGGCTCTGCAGCTGGTGTAGGAGGAGGAATCCGAACCATGTACTC 423
|||||||| ||||||||| ||||| ||||| |||||||||| |||||||||||||||||
Sbjct 407 TGTTCTGCCAAGTCGTGGCCCTGCAACTGGTCTAGGAGGAGGGATCCGAACCATGTACTC 466
Query 424 TTCTGACAACATTGGTGGTTCTTCCGTGGTGAAACCTTCTATTCGTGTACAAAGCCGCAC 483
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 467 TTCTGACAACATTGGTGGTTCTTCCTTGGTGAAACCCTCTATTCGTGTACAAAGCCGCAC 526
Query 484 CAACAATGAACTCTCTGGAAGCAGCAGTAAGGCTCATGTGG-GTAGACGATCCTCTTGCA 542
|||||||||||||||||||||||||||||||| || || | |||||||||||||| |||
Sbjct 527 CAACAATGAACTCTCTGGAAGCAGCAGTAAGGTTCCTG-GACGTAGACGATCCTCTCGCA 585
Query 543 AGTCTGAGCAGCCATGGTCCCCAGACTACTCTCAGAAGCTGAGAAGTTGGAAAAAACGGA 602
|||||| |||||| |||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 586 AGTCTGTGCAGCCTTGGTCCCCAGACTACTCTGAGAAGCTTAGAAGTTGGAAAAAACGGA 645
Query 603 --A-CAACAAC--C-GTGACTTCTCACAGCACTTTGGCAATTACAGAGATGTACCCTCGA 656
| ||||||| | ||||||||||||||| ||||| |||| ||| ||||||||||||||
Sbjct 646 GCAACAACAACAACCGTGACTTCTCACAGCTCTTTGACAATGACATAGATGTACCCTCGA 705
Query 657 -A-GAAATCCAACAGATGTTATACCAATGAGCGTGAGCGCAGGCAGAGAATTGACGATAA 714
| || ||||||| |||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 706 CACGA--TCCAACAAATGTTATACCAATGAGCGTGAGCGCAAGCAGAGAATTGCCGATAA 763
Query 715 CATCAAGGCATTAGGGAAATTGCTCCCACATAAAGTTGAGGAGGATAACCCTGAATTGAC 774
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 764 CATCAAGGCATTAGGGAAATTGCTCCCACATAAAGTTGAGGGGGATAACCATGAATTGAC 823
Query 775 ACTGAATGCCATTGTTGATCATGTTAAGCTTCTTCAGCTACAGATGAAGGAATTAAGTCG 834
|||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 824 ACTGAATGCCATGGTTGATCATGTTAAGCTTCTGCATCTACAGATGAAGGAATTAAGTCG 883
Query 835 AAGCAGGCTGGGAG-A-A-CTAATATCTCATCCTATGACATTCATTGAGGGATACGGTCA 891
||||||| |||||| | | | |||||||||||||||| ||||||||||||||||||||||
Sbjct 884 AAGCAGGTTGGGAGGAGAACCAATATCTCATCCTATGGCATTCATTGAGGGATACGGTCA 943
Query 892 CTACATACATCACGAGCAGACGGTGACAAAATCTCTAGAGGAAGTAATGGAAGATATGCT 951
|||||||||||||||||||||| || |||||||||| |||||||||||||||||| ||||
Sbjct 944 CTACATACATCACGAGCAGACGATGGCAAAATCTCTGGAGGAAGTAATGGAAGATCTGCT 1003
Query 952 TACAAATGACTTGGATGCTGCGGCTAACTTGTTGGAGAGCAAAGGACTATACTTAATGCC 1011
|||||| ||||| |||||||||||||||||||||||||||||||| || ||||||| |||
Sbjct 1004 TACAAAGGACTTTGATGCTGCGGCTAACTTGTTGGAGAGCAAAGGCCTTTACTTAACGCC 1063
Query 1012 TTTGTCCTCTGTCCAAGGCTCCTGCTGATGAGTCCTCTTCTAATCTGCAAATCTCAAACA 1071
|||||||||||||||||||||||||||| |||||| | | | || |||||||||
Sbjct 1064 TTTGTCCTCTGTCCAAGGCTCCTGCTGAC---TCCTCT-C-A--C---AA-TCTCAAACA 1112
Query 1072 CATGGAATCAAAAACAAAGTAAAAAAC--CTTTACACCAATCTTATGTTTAGTATAACAA 1129
|||||||||||||||||||||||||| |||| |||| |||| |||||||||||||||
Sbjct 1113 CATGGAATCAAAAACAAAGTAAAAAAAAACTTTTGACCACTCTTCTGTTTAGTATAACAA 1172
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55371201135
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5