BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496719
Length=621
Score E
Sequences producing significant alignments: (Bits) Value
AT5G64990.2 | Symbols: RABH1a | RAB GTPase homolog H1A | chr5:2... 900 0.0
AT5G10260.1 | Symbols: AtRABH1e, RABH1e | RAB GTPase homolog H1... 494 5e-139
> AT5G64990.2 | Symbols: RABH1a | RAB GTPase homolog H1A | chr5:25963401-25964838
REVERSE LENGTH=849
Length=849
Score = 900 bits (487), Expect = 0.0
Identities = 595/643 (93%), Gaps = 23/643 (4%)
Strand=Plus/Plus
Query 1 ATGGGAGATTTAGG-GAAGGGATACAAGCTAGTGTTCCTGGGCGATCAAGGCGTTGGCAA 59
|||||||||||||| ||||| ||||||||||||||| |||| ||||||||||| || ||
Sbjct 47 ATGGGAGATTTAGGAAAAGGG-TACAAGCTAGTGTTCTTGGGGGATCAAGGCGTAGGGAA 105
Query 60 AACGAGCATCATCACTTGTTTCATGTACGGTAAATTCGACACCAGTTATCAGGCTACAAT 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 106 AACGAGCATCATCACTTGTTTCATGTACGGTAAATTCGACACCAGTTATCAGGCAACAAT 165
Query 120 TGGAATAGACTTTTTGTCCAAAACAATGCGCTATGAAGATAGGACTTTTCGTCTGCAA-- 177
|||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||
Sbjct 166 TGGAATAGACTTTTTGTCAAAAACAACGCGGTATGAAGATAGGACTTTTCGTCTGCAATT 225
Query 178 ----T---------TG-----T-GGGATACAGCAGGACAAGAGAGATTTAAAAGCCTAGT 218
| || | ||||||| |||||||||||||||||||||||||||||
Sbjct 226 GTGGTACAAAAAACTGTCCCTTGGGGATACTGCAGGACAAGAGAGATTTAAAAGCCTAGT 285
Query 219 ACCAAGTTATATCAGAGATTCTTCTGTTGCTGTTATTGTCTATGATGTTGCCAGTAAGCA 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 286 ACCAAGTTATATCAGAGATTCTTCTGTTGCTGTTATTGTCTATGATGTTGCCAGTAAGCA 345
Query 279 ATCATTTTTAAACACCTCCAAGTGGATCGAAGAAGTTCGTGCAGAAAGAGGCAGCCATGT 338
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 346 ATCATTTATAAACACCTCCAAGTGGATCGAAGAAGTTCGTGCAGAAAGAGGCAGCTATGT 405
Query 339 CATTATTGTTCTTGTTGGTAACAAAACCGATCTTGTTAATAAACGGCAAGTTTCAATAGA 398
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 406 CATTATTGTTCTTGTTGGTAACAAAACCGATCTTGTTAATAAAAGGCAAGTTTCGATAGA 465
Query 399 GGAAGGGGATAATAAAGCTCGTGAGTTTGGAGCTTTGTTCATGGAGACTAGTGCAAAAGC 458
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 466 GGAAGGGGAGAATAAAGCTCGTGAGTTTGGAGCTTTGTTCATGGAGACTAGTGCTAAAGC 525
Query 459 TGGATTCAACATTAAGCCTTTGTTCTGTAAGATCACGTCTGCGTTACAAGGAAACGAGGC 518
||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||
Sbjct 526 TGGATTCAACATTAAGCCTTTGTTCTGTAAGATTACATCGGCGTTACAAGGAAACGAGGC 585
Query 519 AGTTTCTTGGACGAAACAAGAGGATTTAGTGGATGTGAATCTAAAGCCATTGATCATTTC 578
||||||||||||||||||||||||||| ||||||||||||||||||||| | || ||||
Sbjct 586 AGTTTCTTGGACGAAACAAGAGGATTTGGTGGATGTGAATCTAAAGCCACTCATGTTTTC 645
Query 579 ATCTCAGGCAGATCATCAACAAGAAAGCAATTGTTCTTGTTAA 621
|||||||||| ||||||||||||||||||||||||||||||||
Sbjct 646 ATCTCAGGCAAATCATCAACAAGAAAGCAATTGTTCTTGTTAA 688
> AT5G10260.1 | Symbols: AtRABH1e, RABH1e | RAB GTPase homolog
H1E | chr5:3219991-3221515 FORWARD LENGTH=838
Length=838
Score = 494 bits (267), Expect = 5e-139
Identities = 459/551 (83%), Gaps = 16/551 (3%)
Strand=Plus/Plus
Query 22 TACAAGCTAGTGTTCCTGGGCGATCAAGGCGTTGGCAAAACGAGCATCATCACTTGTTTC 81
|||||||| |||||||| || |||||| ||||||||| || |||||||||||| |||||
Sbjct 28 TACAAGCTCGTGTTCCTTGGAGATCAATCCGTTGGCAAGACCAGCATCATCACTCGTTTC 87
Query 82 ATGTACGGTAAATTCGACACCAGTTATCAGGCTACAATTGGAATAGACTTTTTGTCCAAA 141
||||||| |||||||| |||| ||||||||| || |||||||| || |||||||| |||
Sbjct 88 ATGTACGACAAATTCGATACCACTTATCAGGCAACCATTGGAATTGATTTTTTGTCAAAA 147
Query 142 ACAATG--CGCTATGAAGATAGGACTTTTCGTCTGCAATTGTGGGATACAGCAGGACAAG 199
|||||| | || ||| ||||||||| ||||||| ||| | |||||||| |||||||| |
Sbjct 148 ACAATGTAC-CT-TGAGGATAGGACTGTTCGTCTCCAACTATGGGATACTGCAGGACAGG 205
Query 200 AGAGATTTAAAAGCCTAGTACCAAGTTATATCAGAGATTCTTCTGTTGCTGTTATTGTCT 259
|||||||| ||| ||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 206 AGAGATTTCGAAGTCTAATACCAAGTTATATCAGAGATTCTTCTGTTGCTGTAATTGTCT 265
Query 260 ATGATGTTGCCAGTAAGCAATCATTTTTAAACACCTCCAAGTGGATCGAAGAAGTTCGTG 319
|||||||||| | || ||| ||||| || ||||| ||||||||||| || || ||||||
Sbjct 266 ATGATGTTGCAAATAGGCAGTCATTCTTGAACACATCCAAGTGGATTGAGGATGTTCGTA 325
Query 320 CAGAAAGAGGCAGCCATGTCATTATTGTTCTTGTTGGTAACAAAACCGATCTTGTTAATA 379
|||| ||||| ||| ||||||| |||||||| |||||||||||||| ||||| || | |
Sbjct 326 CAGAGAGAGGTAGCGATGTCATCATTGTTCTGGTTGGTAACAAAACAGATCTCGTCGACA 385
Query 380 AACGGCAAGTTTCAATAGAGGAAGGGGATAATAAAGCTCGTGAGTT-TGGAGCTT-TGTT 437
|| ||||||| || || |||||||| ||||| ||||||||||| || ||||| | | ||
Sbjct 386 AAAGGCAAGTGTCGATTGAGGAAGGTGATAACAAAGCTCGTGA-TTATGGAG-TAATATT 443
Query 438 CATGGAGACTAGTGCAAAAGCTGGATTCAACATTAAGCC--TTTGTTCTGTAAGAT--CA 493
||| ||||| ||||||||||| ||||| ||||| ||||| ||| ||| | ||||| ||
Sbjct 444 CATTGAGACCAGTGCAAAAGCAGGATTTAACATCAAGCCACTTT-TTC-GCAAGATTGCA 501
Query 494 CGTCTGCGTTACAAGGAAACGAGGCAGTTTCTTGGACGAAACAAGAGGATTTAGTGGATG 553
| | ||||||| ||||| || || |||||| ||||||||||||||| | || ||||
Sbjct 502 -G-CAGCGTTACCAGGAATGGAAACACTTTCTTCAACGAAACAAGAGGATATGGTTGATG 559
Query 554 TGAATCTAAAG 564
|||||||||||
Sbjct 560 TGAATCTAAAG 570
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29939551612
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5