BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496721
Length=1172
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65000.1 | Symbols: | Nucleotide-sugar transporter family p... 1777 0.0
> AT5G65000.1 | Symbols: | Nucleotide-sugar transporter family
protein | chr5:25964960-25967393 REVERSE LENGTH=1227
Length=1227
Score = 1777 bits (962), Expect = 0.0
Identities = 1104/1172 (94%), Gaps = 11/1172 (1%)
Strand=Plus/Plus
Query 1 GATCTTCTGGATTCTCGGCGGCCGGAGATTCATGGCGACGGCTAACGGAGCAAAGAGTCC 60
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 56 GATTTTCTGGATTCTCGACGGCCGGAGATTCATGGCGACGGCTAACGGAGCAAAGAGTCC 115
Query 61 GTCGAGTATGGGCCCTAAGGTTTTGTTTTATTCCATATTGCTTACACTTCAGTACGGAGC 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 116 GTCGAGTATGGGCCCTAAGGTTTTGTTTTATTCCATATTGCTCACACTTCAGTACGGAGC 175
Query 121 CCAGCCTCTGATCTCCAAACGCTGCATCGGGAAGGACGTTATTGTTACTTCATCTGTTTT 180
|||||||||||||||||||||||||||| | ||||| |||||||| ||||||||||||||
Sbjct 176 CCAGCCTCTGATCTCCAAACGCTGCATCAGAAAGGATGTTATTGTAACTTCATCTGTTTT 235
Query 181 GACGTGCGAGATTGTTAAGGTCATGTGTGCTCTGATTCTCATGGCAAGAAATGGTAGTTT 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 236 GACGTGCGAGATTGTTAAGGTCATATGTGCTCTGATTCTCATGGCAAGAAATGGTAGTTT 295
Query 241 GAAGGGATTATCAAAAGAGTGGACGTTGATGGGATCCTTGACTGCATCTGGACTTCCTGC 300
|||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 296 GAAGGGATTAGCAAAAGAGTGGACGTTGATGGGATCCTTGACAGCATCAGGACTTCCTGC 355
Query 301 AGCCATATATGCACTGCAGAACAGTTTGCTGCAGATCTCATACAGGAATCTTGATTCCTT 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 356 AGCCATATATGCACTGCAGAACAGTTTGCTGCAGATCTCATACAGGAGTCTTGATTCCTT 415
Query 361 GACGTTTTCAATTCTGAATCAGACGAAAATCTTTTTCACAGCATTTTTTACATTCATAAT 420
||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 416 GACATTTTCAATTCTGAATCAGACGAAAATCTTTTTCACAGCATTCTTTACTTTCATAAT 475
Query 421 TCTAAGGCAGAAGCAATCAATTCAACAAATAGGAGCCTTGTGTCTATTGATCATGGCAGC 480
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 476 ACTAAGGCAGAAGCAATCAATTCTACAAATAGGAGCCTTGTGTCTATTGATCATGGCAGC 535
Query 481 AGTCCTTCTAAGTGTTGGTGAAGGATCTAACAAAGATTCAAGTGGCATTAATGCGGATCA 540
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 536 AGTCCTTCTAAGTGTTGGTGAAGGCTCTAACAAAGATTCAAGCGGCATTAATGCGGATCA 595
Query 541 AAAGCTGTTTAATGGAATTATCCCGGTCTTGGTAGCCTCAGTGCTCTCGGGTTTAGCCTC 600
|||||||||| ||||||||||||||||||||| |||||| || || ||||||||||||||
Sbjct 596 AAAGCTGTTTTATGGAATTATCCCGGTCTTGGCAGCCTCTGTCCTGTCGGGTTTAGCCTC 655
Query 601 TTCTCTATGTCAATGGGCTTCTCAGGTCAAGAAGCATTCATCATACTTAATGACGGTTGA 660
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 TTCTCTGTGTCAATGGGCTTCTCAGGTCAAGAAGCATTCATCATACTTAATGACGGTTGA 715
Query 661 AATGTCTATTGTTGGAAGCCTCTGCTTATTAGTAAGTACCCTTAAATCTCCAGATGGTGA 720
||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 716 AATGTCTATCGTTGGAAGCCTCTGTTTATTAGTAAGTACTCTTAAATCTCCAGATGGTGA 775
Query 721 AGCGATTAAAAGATATGGCTTCTTTCATGGTTGGACAGCTTTAACACTGGTCCCAGTGAT 780
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 776 AGCGATTAAAAAATATGGCTTCTTTCATGGTTGGACTGCTTTAACACTGGTCCCAGTAAT 835
Query 781 AAGCAACGCCCTTGGTGGGATTCTTGTTGGCCTAGTTACATCACATGCCGGTGGTGTAAG 840
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 AAGCAATGCTCTTGGTGGGATTCTTGTTGGCCTAGTTACATCACATGCCGGTGGTGTAAG 895
Query 841 AAAGGGATTTGTGATTGTGTCGGCATTACTTGTGACAGCGCTACTTCAGTTTGCGTTTGA 900
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 896 AAAGGGATTTGTGATTGTGTCGGCATTACTTGTGACGGCGCTACTTCAATTTGCGTTTGA 955
Query 901 AGGAAAACCGCCATCATCGTATTGCCTGGTCGCTCTCCCTCTTGTGATGAGTAGTATCTC 960
||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||
Sbjct 956 AGGAAAACCGCCATCATCGTATTGCCTAGTTGCTCTTCCTCTTGTGATGAGTAGTATCTC 1015
Query 961 GCTGTACCAGAAATATCCATACCTTGACaagaagaagaagaaggtttaagaagaaCCTTC 1020
||||||||||||| |||||| |||||||||||||||||||||| |||||| || |||
Sbjct 1016 AATGTACCAGAAATACCCATACATTGACAAGAAGAAGAAGAAGGTGTAAGAAAAAGGTTC 1075
Query 1021 CATTCACAGAATAGCTGCTAAAAATTCAACAATGAGATGTCTTAATTAATGCCATTAGTA 1080
|||||| ||||||||||||| | |||||||||||| ||||||| ||||||| ||
Sbjct 1076 CATTCAGAGAATAGCTGCTAGTTA--CAACAATGAGATATCTTAAT----GCCATTATTA 1129
Query 1081 GTAATTAACTAGATGATGATAGTGAATGATTCTTGGAGCATTCAAAAGACATTGTAGTAT 1140
||| ||| |||||||| | ||| |||||||||||||||||||||||| |||||||||
Sbjct 1130 TTAACTAAGTAGATGAT-A--GTG--TGATTCTTGGAGCATTCAAAAGACTTTGTAGTAT 1184
Query 1141 ATTTACATTCGAAGATGGAATGAGTCCAATTG 1172
|||||||||| |||||||||||||||||||||
Sbjct 1185 ATTTACATTCAAAGATGGAATGAGTCCAATTG 1216
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57529824570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5