BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496724
Length=1175
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65020.1 | Symbols: ANNAT2 | annexin 2 | chr5:25973815-25975... 1650 0.0
> AT5G65020.1 | Symbols: ANNAT2 | annexin 2 | chr5:25973815-25975726
FORWARD LENGTH=1226
Length=1226
Score = 1650 bits (893), Expect = 0.0
Identities = 1015/1071 (95%), Gaps = 19/1071 (2%)
Strand=Plus/Plus
Query 1 TTACTTAAGCAGGACGACGTGCGTCTGCTGCGTCTCTCATTAC-AAGCAGAAG-AA-AC- 56
||||||||| ||||||||||||||||||| || ||||||||| ||||||||| || ||
Sbjct 1 TTACTTAAGTAGGACGACGTGCGTCTGCTTCG--TCTCATTACAAAGCAGAAGAAACACA 58
Query 57 -A-AGAGTTAAAGA-C-T--GA--T----CCCAA-CCCAACAATGGCGTCTCTCAAAGTC 103
| |||| | ||| | | || | | || |||||||||||||||||||||||||
Sbjct 59 AACAGAGGCAGAGATCTTAAGAGTTAAAGACTAATCCCAACAATGGCGTCTCTCAAAGTC 118
Query 104 CCAACCAATGTTCCTCGTCCCGAAGATGACGCTGAGCAACTCCACAAGGCATTTTCAGGA 163
|||| ||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 119 CCAAGCAATGTTCCTCTTCCCGAAGATGACGCCGAGCAACTCCACAAGGCTTTTTCAGGA 178
Query 164 TGGGGCACCAACGAGAAGCTGATCATATCAATTCTAGCTCACAGGAACGCAGCACAACGC 223
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 179 TGGGGTACCAACGAGAAGCTGATCATATCAATACTAGCTCACAGGAACGCAGCACAACGC 238
Query 224 AGCTTAATCCGCAGCGTTTATGCCGCTACCTACAATGAGGATCTTCTCAAGGCATTAGAC 283
||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 239 AGCTTGATCCGCAGCGTTTATGCAGCTACCTACAATGAGGATCTTCTCAAAGCATTAGAC 298
Query 284 AAAGAGCTTTCTAGTGACTTTGAGAGAGCTGTGATGTTGTGGACTCTTGATCCAGCAGAG 343
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 299 AAAGAGCTTTCTAGCGACTTTGAGAGAGCTGTGATGTTGTGGACTCTTGATCCACCAGAG 358
Query 344 AGAGATGCTTATCTAGCTAAAGAATCCACCAAAATGTTCACCAAGAACAATTGGGTTCTT 403
|||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 359 AGAGATGCTTATTTGGCTAAAGAATCCACCAAGATGTTCACCAAGAACAATTGGGTTCTT 418
Query 404 GTTGAAATCGCTTGCACAAGGCCTGCTCTTGAGCTTTTCAAGGTCAAGCAAGCTTACCAA 463
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 419 GTTGAAATCGCTTGCACAAGGCCTGCTCTTGAGCTTATCAAGGTCAAGCAAGCTTACCAA 478
Query 464 GCTCGATACAAGAAATCACTCGAGGAAGATGTGGCGCAACACACATCTGGTGACCTTCGT 523
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 479 GCTCGATACAAGAAATCAATCGAGGAAGATGTCGCGCAACACACATCTGGTGACCTTCGT 538
Query 524 AAGCTCTTGCTTCCTCTTGTGAGCACTTTCAGGTATGAAGGAGATGATGTGAACATGATG 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 AAGCTCTTGCTTCCTCTTGTGAGCACTTTCAGGTATGAAGGAGATGATGTGAACATGATG 598
Query 584 CTTGCAAGATCTGAAGCTAAGATACTTCACGAGAAGGTCTCAGAGAAAGCTTACAGCGAC 643
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 599 CTTGCAAGATCTGAAGCTAAGATACTTCACGAGAAGGTCTCAGAGAAATCTTACAGTGAC 658
Query 644 GATGACTTCATCAGAATCTTGACAACAAGAAGCAAAGCACAGCTCGGCGCAACACTAAAC 703
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 659 GATGACTTCATCAGAATCTTGACAACAAGAAGCAAAGCACAGCTCGGTGCAACACTCAAC 718
Query 704 CACTACAACAACGAGTACGGAAACGCCATTAACAAGAACTTGAAGGAAGAGTCAGACGAC 763
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 719 CACTACAACAACGAGTATGGAAACGCCATTAACAAGAACTTGAAGGAAGAGTCGGACGAC 778
Query 764 AATGACTACCTGAAACTACTAAGAGCTGTAATCACATGTTTGACATACCCTGAGAAGCAT 823
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 AATGACTACATGAAACTACTAAGAGCTGTAATCACATGTTTGACATACCCTGAGAAGCAT 838
Query 824 TTTGAGAAGGTTCTGCGTCTATCAATCAACAAAATGGGAACAGACGAATGGGGACTAACC 883
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TTTGAGAAGGTTCTTCGTCTATCAATCAACAAAATGGGAACAGACGAATGGGGACTAACC 898
Query 884 CGAGTCGTGACTACACGAACTGAAGTTGACATGGAACGCATCAAAGAGGAATATCAGCGA 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 CGAGTCGTGACTACACGAACTGAAGTTGACATGGAACGCATCAAAGAGGAATATCAGCGA 958
Query 944 AGGAACAGCATTCCTTTGGACCGTGCTATCGCCAAAGACACTTCTGGTGATTATGAGGAC 1003
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 959 AGAAACAGCATTCCTTTGGACCGTGCTATCGCCAAAGACACTTCTGGTGACTATGAGGAC 1018
Query 1004 ATGCTTGTTGCTCTTCTCGGACATGGTGATGCTTGAAACTGGTTCAATTTT 1054
|||||||||||||||||||||||||| |||||||||||||| ||||| |||
Sbjct 1019 ATGCTTGTTGCTCTTCTCGGACATGGCGATGCTTGAAACTGTTTCAACTTT 1069
Score = 182 bits (98), Expect = 9e-45
Identities = 118/127 (93%), Gaps = 4/127 (3%)
Strand=Plus/Plus
Query 1051 TTTTGAATAAGAGAGTTGTGAAACTGGTTTCTGCAACTATTTATCAATGATCGTTTTGAG 1110
|||| ||||| |||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 1102 TTTTAAATAAAAGAGTTGTGAAACTGG-TTCTGCAACTATTTATCAATGATCGTTT-GAG 1159
Query 1111 TTTGTTAA-TTTGAATCAAAATCTGTTTTCCTTTCTTT-AAATGCAATCTAAAGCACAAG 1168
|||||||| |||||||||||||||||||| |||||||| |||| |||||||||||||||
Sbjct 1160 TTTGTTAAATTTGAATCAAAATCTGTTTTTCTTTCTTTTAAATACAATCTAAAGCACAAA 1219
Query 1169 CTAAAGC 1175
|||||||
Sbjct 1220 CTAAAGC 1226
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57680426205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5