BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496726
Length=607
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65040.1 | Symbols: | Protein of unknown function (DUF581) ... 763 0.0
> AT5G65040.1 | Symbols: | Protein of unknown function (DUF581)
| chr5:25977621-25978417 REVERSE LENGTH=652
Length=652
Score = 763 bits (413), Expect = 0.0
Identities = 555/618 (90%), Gaps = 31/618 (5%)
Strand=Plus/Plus
Query 1 AGAGAGATAGAGAAGATGGTGTTAGGAAAGCGTCATGGATCACTGATCAAGAGAACAACA 60
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 53 AGAGAGAGAGAGAAGATGGTGTTAGGAAAGCGTCATGGATCACTGATCAAGAGAACAACT 112
Query 61 AGCATGAAGATGATCACACTCGATACCCCCACGATCTGCGACGCATCTCAACCGTCCGAT 120
|||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||
Sbjct 113 AGCATGAAGATGATCACACTCGATACACCCACGATCTATGACGCATCTCAGCCGTCCGAT 172
Query 121 CATCTAACCCTTCATCAACATCCTCATAATCCGACGGTGGTGATGGCTACTAACTACGAT 180
||||||||| |||||||||| ||||| ||||||| |||||||||||||| ||||||||||
Sbjct 173 CATCTAACCTTTCATCAACACCCTCACAATCCGATGGTGGTGATGGCTAGTAACTACGAT 232
Query 181 GATTTCTTGAGGACTTGTAGTCTCTGCAATCGAAGTCTCTGCCATCATCGTGACATTTAC 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 GATTTCTTGAAGACTTGTAGTCTCTGCAATCGAAGTCTCTGCCATCATCGTGACATTTAC 292
Query 241 ATGTATAGAGGGAACAACGCATTTTGTAGCTTAGAATGCAGGGAGAAGCAAATTAAGCTG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 ATGTATAGAGGGAACAACGCATTTTGTAGCTTAGAATGCAGGGAGAAGCAAATTAAGCTG 352
Query 301 GACGAGAGAAAAGCGAAAACCGGCTTCATATCATCGAAGAAACCAATTCGTGTTTA---- 356
||||||| ||||||||||||||||||| || |||||||||||||||||||| ||||
Sbjct 353 GACGAGAAAAAAGCGAAAACCGGCTTCGTAACATCGAAGAAACCAATTCGTATTTAGTTG 412
Query 357 AT--TCG-T-ATCTACAACGATAACGATAGTCTTTCCTTATGAGTAAAATGAATATGTTT 412
|| || | ||||| || |||||||||||| ||||||||||||||||||||||||||||
Sbjct 413 ATCATCTATGATCTAAAATGATAACGATAGTTTTTCCTTATGAGTAAAATGAATATGTTT 472
Query 413 --GCGTTTTGTATAAAAGAATGATGAAAATTATGAGAAACAAATAGAAGATGAGAGACTA 470
|||||| || || ||||||||||||||||| |||| | ||| | ||||| |||
Sbjct 473 TTGCGTTTCGTGTACAAGAATGATGAAAATTAAGAGAGA-AAA-A-----TGAGA--CTA 523
Query 471 AATGCTTGTAGTGATCATATATATAATAATGTGACTTCATAATTTATGATTTGTTTTGTT 530
|||| ||||||||||||||| |||| | |||||||||| |||||||| ||||||
Sbjct 524 AATGAGTGTAGTGATCATATAG-TAATG--G-GACTTCATAAGC-ATGATTTGATTTGTT 578
Query 531 CGTGTGATTTGTTTCTTTGTGAGATGTGTAAAATTATGTAATG-AATTATCAATGTTGAT 589
|||||||||||||||||||||| ||||||| | |||||||| ||| ||||||||||||
Sbjct 579 CGTGTGATTTGTTTCTTTGTGA--TGTGTAA--T-ATGTAATGTAAT-ATCAATGTTGAT 632
Query 590 GTATATTCAGGTGGTCTT 607
||||||||||||||||||
Sbjct 633 GTATATTCAGGTGGTCTT 650
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29236273554
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5