BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496727
Length=704
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65060.1 | Symbols: MAF3, FCL3, AGL70 | K-box region and MAD... 848 0.0
AT5G65050.3 | Symbols: AGL31, MAF2 | AGAMOUS-like 31 | chr5:259... 824 0.0
AT1G77080.4 | Symbols: MAF1, FLM, AGL27 | K-box region and MADS... 706 0.0
> AT5G65060.1 | Symbols: MAF3, FCL3, AGL70 | K-box region and MADS-box
transcription factor family protein | chr5:25987429-25991315
FORWARD LENGTH=939
Length=939
Score = 848 bits (459), Expect = 0.0
Identities = 553/596 (93%), Gaps = 16/596 (3%)
Strand=Plus/Plus
Query 1 AAGAGAGAGAGAAACGAAGCaaaaaaaaGAAGCAAAGACATTGTGGGTCTCCTCCTCCGG 60
|||| ||| |||||||||| ||||| ||||||| ||||| |||| ||| ||||
Sbjct 5 AAGA-AGATAGAAACGAAG----AAAAA-AAGCAAACACATTTTGGG-----TCC-CCGG 52
Query 61 TGAG-TAGGATCAAATTAGGGCATTATCCTTATCGGTGAAATAAGCCATGGGAAGAAGAA 119
|| | |||||||||||||||||| | ||||||||| |||| ||||||||||||||||||
Sbjct 53 TG-GTTAGGATCAAATTAGGGCACAAACCTTATCGGAGAAAGAAGCCATGGGAAGAAGAA 111
Query 120 AAGTCGAGATCAAGCGAATCGAGAACAAAAGCAGTCGACAAGTCACTTTCTCCAAACGAC 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 112 AAGTCGAGATCAAGCGAATCGAGAACAAAAGCAGTCGACAAGTCACTTTCTCCAAACGAC 171
Query 180 GCAAAGGTCTCATCGAGAAAGCTCGACAACTTTCAATTCTCTGGGAATCTTCCATCGCTG 239
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 172 GCAAAGGTCTCATCGAAAAAGCTCGACAACTTTCAATTCTCTGTGAATCTTCCATCGCTG 231
Query 240 TTCTCGTCGTCTCCGGCTCCGGAAAACTCTACAACGCTGCTTCCGGTGACAACATGTCAA 299
|| ||| ||||||||| ||||||||||||||| || |||| |||||||||||||||||||
Sbjct 232 TTGTCGCCGTCTCCGGTTCCGGAAAACTCTACGACTCTGCCTCCGGTGACAACATGTCAA 291
Query 300 AGATCATTGATCGCTATGAAATACAACATGCTGATGAACTTAAAGCCTTAGATCTTGCAG 359
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 292 AGATCATTGATCGTTATGAAATACATCATGCTGATGAACTTAAAGCCTTAGATCTTGCAG 351
Query 360 AAAAAATTCGGAATTATCTTCCACACAAGGAGTTACTAGAAATAGTCCAAAGCAAGCTTG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 AAAAAATTCGGAATTATCTTCCACACAAGGAGTTACTAGAAATAGTCCAAAGCAAGCTTG 411
Query 420 AAGAACCAAATGTCGATACTGTAAGTGTAGATTCTCTAATTTCTATGGAGGAACAGCTCG 479
||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 412 AAGAATCAAATGTCGATAATGTAAGTGTAGATTCTCTAATATCTATGGAGGAACAGCTCG 471
Query 480 AGACTGCTCTGTCCGTAATTAGAGCTAAGAAGTCAGAACTAATGATGGAGGA-AGTGAAG 538
||||||||||||| |||||||||||||||||| ||||||||||||||||||| | |||||
Sbjct 472 AGACTGCTCTGTCAGTAATTAGAGCTAAGAAGACAGAACTAATGATGGAGGATA-TGAAG 530
Query 539 TCCCTTCAAGAAACGGAGATGTTGCTGAGAGAAGAGAACCAGATTCTGGCTAGCCA 594
|| |||||||||| ||||| |||||||| |||||||||||||||||||||||||||
Sbjct 531 TCACTTCAAGAAAGGGAGAAGTTGCTGATAGAAGAGAACCAGATTCTGGCTAGCCA 586
> AT5G65050.3 | Symbols: AGL31, MAF2 | AGAMOUS-like 31 | chr5:25982254-25986326
FORWARD LENGTH=964
Length=964
Score = 824 bits (446), Expect = 0.0
Identities = 548/596 (92%), Gaps = 11/596 (2%)
Strand=Plus/Plus
Query 2 AGAGAGAGAGAAACGAAGCaaaaaaaaGAAGC-AAAGACATTGTGGGTCTCCTCCTCCGG 60
|||||||||||||||||| ||||||||||||| ||| |||||||||| | ||||||
Sbjct 62 AGAGAGAGAGAAACGAAGAAAAAAAAAGAAGCAAAAAACATTGTGGG-----T-CTCCGG 115
Query 61 TGAGTAGGATCAAATTAGGGCATTATCCTTATCGGTGAAATAAGCCATGGGAAGAAGAAA 120
||| |||||||||||||||||| | ||||||||| | || |||||||||| |||| |||
Sbjct 116 TGATTAGGATCAAATTAGGGCACCAGCCTTATCGGAGGAAGAAGCCATGGGTAGAAAAAA 175
Query 121 AGTCGAGATCAAGCGAATCGAGAACAAAAGCAGTCGACAAGTCACTTTCTCCAAACGACG 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 176 AGTCGAGATCAAGCGAATCGAGAACAAAAGTAGTCGACAAGTCACTTTCTCCAAACGACG 235
Query 181 CAAAGGTCTCATCGAGAAAGCTCGACAACTTTCAATTCTCTGGGAATCTTCCATCGCTGT 240
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 236 CAATGGTCTCATCGAGAAAGCTCGACAACTTTCAATTCTCTGTGAATCTTCCATCGCTGT 295
Query 241 TCTCGTCGTCTCCGGCTCCGGAAAACTCTACAACG-CTGCTTCCGGTGACAACATGTCAA 299
||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||
Sbjct 296 TCTCGTCGTCTCCGGCTCCGGAAAACTCTACAA-GTCTGCCTCCGGTGACAACATGTCAA 354
Query 300 AGATCATTGATCGCTATGAAATACAACATGCTGATGAACTTAAAGCCTTAGATCTTGCAG 359
||||||||||||| || |||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 355 AGATCATTGATCGTTACGAAATACATCATGCTGATGAACTTGAAGCCTTAGATCTTGCAG 414
Query 360 AAAAAATTCGGAATTATCTTCCACACAAGGAGTTACTAGAAATAGTCCAAAGCAAGCTTG 419
|||||| |||||||||||| |||| ||| |||||||||||||||||||||||||||||||
Sbjct 415 AAAAAACTCGGAATTATCTGCCACTCAAAGAGTTACTAGAAATAGTCCAAAGCAAGCTTG 474
Query 420 AAGAACCAAATGTCGATACTGTAAGTGTAGATTCTCTAATTTCTATGGAGGAACAGCTCG 479
||||| |||||||||||| || |||||| ||| || |||||||| |||||||||||||||
Sbjct 475 AAGAATCAAATGTCGATAATGCAAGTGTGGATACTTTAATTTCTCTGGAGGAACAGCTCG 534
Query 480 AGACTGCTCTGTCCGTAATTAGAGCTAAGAAGTCAGAACTAATGATGGAGGAAGTGAAGT 539
|||||||||||||||||| |||||||| |||| ||||||||||||||| |||||||||||
Sbjct 535 AGACTGCTCTGTCCGTAACTAGAGCTAGGAAGACAGAACTAATGATGGGGGAAGTGAAGT 594
Query 540 CCCTTCAAGAAACGGAGATGTTGCTGAGAGAAGAGAACCAGA-TTCTGGCTAGCCA 594
|||||||| ||||||||| |||||||||||||||||||||| || ||||||||||
Sbjct 595 CCCTTCAAAAAACGGAGAACTTGCTGAGAGAAGAGAACCAGACTT-TGGCTAGCCA 649
> AT1G77080.4 | Symbols: MAF1, FLM, AGL27 | K-box region and MADS-box
transcription factor family protein | chr1:28955637-28960096
FORWARD LENGTH=884
Length=884
Score = 706 bits (382), Expect = 0.0
Identities = 483/532 (91%), Gaps = 5/532 (1%)
Strand=Plus/Plus
Query 66 AGGATCAAATTAGGGCATTATCCTTATCGGTGAAAT-AAGCCATGGGAAGAAGAAAAGTC 124
||||| |||||||||||| | ||||||||| || | |||||||||||||||||||| ||
Sbjct 1 AGGATTAAATTAGGGCATAACCCTTATCGGAGATTTGAAGCCATGGGAAGAAGAAAAATC 60
Query 125 GAGATCAAGCGAATCGAGAACAAAAGCAGTCGACAAGTCACTTTCTCCAAACGACGCAAA 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAGATCAAGCGAATCGAGAACAAAAGCAGTCGACAAGTCACTTTCTCCAAACGACGCAAT 120
Query 185 GGTCTCATCGAGAAAGCTCGACAACTTTCAATTCTCTGGGAATCTTCCATCGCTGTTCTC 244
||||||||||| ||||||||||||||||| |||||||| ||||| ||| |||||||| ||
Sbjct 121 GGTCTCATCGACAAAGCTCGACAACTTTCGATTCTCTGTGAATCCTCCGTCGCTGTTGTC 180
Query 245 GTCGTCTCCGGCTCCGGAAAACTCTACAACGCTGCTTCCGGTGACAACATGTCAAAGATC 304
||||| || | ||||||||||||||| || || | ||||||||| |||| || ||||||
Sbjct 181 GTCGTATCTGCCTCCGGAAAACTCTATGACTCTTCCTCCGGTGACGACATTTCCAAGATC 240
Query 305 ATTGATCGCTATGAAATACAACATGCTGATGAACTTAAAGCCTTAGATCTTGCAGAAAAA 364
|||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 241 ATTGATCGTTATGAAATACAACATGCTGATGAACTTAGAGCCTTAGATCTTGAAGAAAAA 300
Query 365 ATTCGGAATTATCTTCCACACAAGGAGTTACTAGAAATAGTCCAAAGCAAGCTTGAAGAA 424
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 301 ATTCAGAATTATCTTCCACACAAGGAGTTACTAGAAACAGTCCAAAGCAAGCTTGAAGAA 360
Query 425 CCAAATGTCGATACTGTAAGTGTAGATTCTCTAATTTCTATGGAGGAACAGCTCGAGACT 484
||||||||||||| ||||||||||||||||||||||||| |||||||||| || ||||||
Sbjct 361 CCAAATGTCGATAATGTAAGTGTAGATTCTCTAATTTCTCTGGAGGAACAACTTGAGACT 420
Query 485 GCTCTGTCCGTAATTAGAGCTAAGAAGTCAGAACTAATGATGGAGGA-AGT-GAAGTCCC 542
||||||||||||| |||||||| |||| ||||||| ||||||||| | | | || |||||
Sbjct 421 GCTCTGTCCGTAAGTAGAGCTAGGAAGGCAGAACTGATGATGGAGTATA-TCGA-GTCCC 478
Query 543 TTCAAGAAACGGAGATGTTGCTGAGAGAAGAGAACCAGATTCTGGCTAGCCA 594
|| |||||| ||||| ||||||||||||||||||||| |||||||||||||
Sbjct 479 TTAAAGAAAAGGAGAAATTGCTGAGAGAAGAGAACCAGGTTCTGGCTAGCCA 530
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34108985813
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5