BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496732
Length=1623
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65100.1 | Symbols: | Ethylene insensitive 3 family protein... 1563 0.0
AT5G10120.1 | Symbols: | Ethylene insensitive 3 family protein... 568 8e-161
> AT5G65100.1 | Symbols: | Ethylene insensitive 3 family protein
| chr5:26006835-26008508 REVERSE LENGTH=1674
Length=1674
Score = 1563 bits (846), Expect = 0.0
Identities = 946/996 (95%), Gaps = 0/996 (0%)
Strand=Plus/Plus
Query 1 ATGGTGGAGGTTCAAGATTTAGAACCACTAAGTCCAATTCAAGACGAAGATGGCGATGAA 60
||||||||||| ||||||||||||||||| |||||||| || ||| | |||| |||||
Sbjct 1 ATGGTGGAGGTCCAAGATTTAGAACCACTTAGTCCAATACAGGACTACGATGAAGATGAC 60
Query 61 TTAGAAGAAGATGAGGACGAATTTGAACGTTTTGGTGAAGAAATCAGCTACGACGATCTC 120
| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTCGAAGAAGACGTGGACGAATTTGAACGTTTTGGTGAAGAAATCAGCTACGACGATCTC 120
Query 121 AAGAAACGCATGTGGAAAGATCGAAACCTCATGTGTAAGCTCAAGCAGCAGAAAAGAGAT 180
||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct 121 AAGAAACGCATGTGGAAAGATCGAAACCTCATGTGTAAGCTTAAACAGCAAAAAAGAGAT 180
Query 181 AATCATAGCTCCGTTATCTCTTCGCCGTCATCTTCCACGTCAGCATCATCCTCTTCCTCC 240
|||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 181 AATCTTAACTCCGTTATCTCTTCGCCGTCATCTTCCACGTCAGCATCATCCTCTTCATCA 240
Query 241 TCCTCCGGTATCGTGCGCCGAGCAGAAGCTTCACGCCGCAAGAAAATGGCTCGATCTCAA 300
||||||| ||||||||||||| | ||||||||||| ||||||||||||||||||||||||
Sbjct 241 TCCTCCGTTATCGTGCGCCGAACTGAAGCTTCACGGCGCAAGAAAATGGCTCGATCTCAA 300
Query 301 GATTCGGTGTTGAAGTACATGATGAAGATAATGGAAGTTTGCAAAGCTCAAGGATTCGTT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GATTCGGTGTTGAAGTACATGATGAAGATAATGGAAGTTTGCAAAGCTCAAGGATTCGTT 360
Query 361 TACGGAATCGTACCGGAAAAAGGTAAACCGGTAACCGGTTCTTCAGACAGTTTAAGACGT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TACGGAATCGTACCGGAAAAAGGTAAACCGGTAACCGGTTCTTCAGACAGTTTAAGACGT 420
Query 421 TGGTGGAAAGAAAACGTTCAATTCGATCAAACCGCTCCAAACGCTGTTTCTGATTACTTA 480
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 421 TGGTGGAAAGAAAACGTTCAATTCGACCAAACCGCTCCAAACGCTGTTTCTGATTACTTG 480
Query 481 ACTTTAGCGGCTGCTCAGTTAATCTCATCAAACGAATCTTTAGATCCGAATTCGTATATT 540
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ACATTAGCGGCTGCTCAGTTAATCTCATCAAACGAATCTTTAGATCCGAATTCGTATATC 540
Query 541 CACATGCTTCACGAGCTACAAGACACGACTTTAGGTTCGTTGTTATCAGCTTTGATGCAA 600
||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 541 CACATGCTTCACGAGCTACAAGACACGACGTTAGGGTCATTGTTATCAGCTTTGATGCAA 600
Query 601 CATTGCGTACCCCCACAACGGCGGTTTCCGTTGGAAAAAGGTTTGGCTCCGCCGTGGTGG 660
|||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 601 CATTGCGTGCCGCCACAACGACGGTTTCCGTTGGAAAAAGGTTTGGCTCCGCCGTGGTGG 660
Query 661 CCCAACGGGACGGAGTTATGGTGGGGAGAGCAAGGAGCTGCGGCGTTTGAGCATGGTCCG 720
|| |||||||| |||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 661 CCGAACGGGACAGAGTTATGGTGGGGAGAGCAAGGAGCTGCGGCGTTTGAACACGGTCCA 720
Query 721 CCTCCATATCGGAAACCGCACGATTTGAGAAAAGCTTGGAAAGTGAGCGTTTTAGCGGCT 780
||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 721 CCTCCATATCGCAAACCGCACGATCTAAGAAAAGCTTGGAAAGTGAGCGTTTTAGCGGCT 780
Query 781 GTGATTAAACACATGTCGCCGAATTTGGAGAGAGTGAGACGGCTCGCGAGACAGTCCAAG 840
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 781 GTGATTAAACACATGTCGCCGAATTTGGAGAGAGTGAGACGGCTCGCGAGACAGTCAAAG 840
Query 841 TGTTTGCAAGATAAGATGATGGCGAAAGAGACCGATACCTGGTCTCGTGTGTTGAATCAA 900
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 841 TGTTTGCAAGATAAGATGATGGCGAAAGAGACTGATACTTGGTCTCGTGTGTTGAACCAA 900
Query 901 GAAGAAGCTCGTCTCAATCGCCTCAAGATCTCAGATGACGAGGACGAGGATCGAGATCAA 960
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 901 GAAGAAGCTCGTCTCAATCGCCTCAAGATCTCAGATGACGAAGACGAGGATCGAGATCAA 960
Query 961 GAACTAGCAAGATTCACTTGTTTTGATAAAGAACCG 996
|||| |||||||||||| ||||||||| ||||||||
Sbjct 961 GAACAAGCAAGATTCACATGTTTTGATCAAGAACCG 996
Score = 813 bits (440), Expect = 0.0
Identities = 566/626 (90%), Gaps = 12/626 (2%)
Strand=Plus/Plus
Query 1001 ACAAAAGGGTTGATCAAGAATCTTCCTTGAACAACTGTTTTCTTGTAGCGCAAGATCAAG 1060
|||||||||||||||| |||| ||||| |||| | ||||| |||||||||||||||||||
Sbjct 1058 ACAAAAGGGTTGATCAGGAATTTTCCTCGAACGATTGTTTCCTTGTAGCGCAAGATCAAG 1117
Query 1061 AA--TTGCGGAATGAAAAAAGGGTTGATCAAGAAAAGTCGCTAAATACTTGTTTTCTTGT 1118
|| | | | || ||||||| || |||||||||| ||| | |||| |||||||||||||
Sbjct 1118 AACCTAG-GAAAGGAAAAAA-GGCTGATCAAGAATGGTCTCCAAATTCTTGTTTTCTTGT 1175
Query 1119 GGCCCAAGATCAAGAA-CAGTTGGGTAATAAGAGAAAAGGTAAGTTTGCGGAGCATGAGG 1177
||||||||| || || ||||| |||||||||||| |||| | ||| | ||||
Sbjct 1176 ------TGATCAAGAACCA-TTAGGTAACAAGAGAAAAGGTGAGTTCGTGGAAAAAGAGG 1228
Query 1178 CGATGTTATCTAATGTCTACACTTGCCAAAACTCGAGTTGTCCTTCGAGTGATGTGAGTT 1237
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1229 CGATGTTATCTAATGTATACACTTGCCAAAACTCGAGTTGTCCTTCGAGTGATGTGAGTT 1288
Query 1238 TAGGATTCGTGGACAAGAACTTGAGGACCGGCCACGAGATTGAGTGTCTCTACGGGACTC 1297
||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||
Sbjct 1289 TAGGATTCGTGGACAAGAACTTGAGAACCGGTCACGAGATTGAGTGTCTTTACGGGACTC 1348
Query 1298 AAGAACTGGCAAACCAGAGTAGTGGTGGTGGCTCGGATGGGTTTGTTAGGTCGATGACTA 1357
|||||||| |||||||||||||||||| |||||||||||||||||| ||||||| ||||
Sbjct 1349 CAGAACTGGTAAACCAGAGTAGTGGTGGCGGCTCGGATGGGTTTGTTCGGTCGATTACTA 1408
Query 1358 CGAGTGATGATGATTACAGCGCGAGCTCCAAGGCAGAGGACACAAGAGATTATCATAATC 1417
||||||| |||||||||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct 1409 CGAGTGACGATGATTACAGCGCCAGCTCGAAAGCAGAGGACACAAGAGATTATCATAATC 1468
Query 1418 AAGATGGAAACTGGCTAGATTATCTCTGGTTCGAGAGGTTACATGACTTGAACTGTTCTG 1477
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1469 AAGATGGAAACTGGCTAGATTATCTCTGGTTCGAGAGGTTACATGACTTGAATTTTTCTG 1528
Query 1478 AGCAAGGATTTGAAGATCAAACGAGCACAGTGGATTTGAACCAATTACCAGATCATTCTG 1537
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1529 ATCAAGGATTTGAAGATCAAACAAGCACAGTGGATTTGAACCAATTACCAGATCATTCTG 1588
Query 1538 ACTCGAATCAGACCATGAACGAGGAAGATTTCTCGTTATGGGACATGGGTTGTGAAGACA 1597
|||| ||||| |||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1589 ACTCCAATCAAACCATGAACGAGGATGACATCTCGTTATGGGACATGGGTTGTGAAGACA 1648
Query 1598 GAGATATTTACATGTCTCAAGATTGA 1623
||||||||| |||||||||||||||
Sbjct 1649 AAGATATTTATATGTCTCAAGATTGA 1674
> AT5G10120.1 | Symbols: | Ethylene insensitive 3 family protein
| chr5:3169732-3171147 FORWARD LENGTH=1416
Length=1416
Score = 568 bits (307), Expect = 8e-161
Identities = 586/715 (82%), Gaps = 41/715 (6%)
Strand=Plus/Plus
Query 258 CCGAGCAGAAGCTTCACGCCGCAAGAAAATGGCTCGATCTCAAGATTCGGTGTTGAAGTA 317
|||||| ||||||||||| |||||||| |||||||| ||||||||||| |||||||||||
Sbjct 168 CCGAGCCGAAGCTTCACGGCGCAAGAAGATGGCTCGTTCTCAAGATTCAGTGTTGAAGTA 227
Query 318 CATGATGAAGATAATGGAAGTTTGCAAAGCTCAAGGATTCGTTTACGGAATCGTACCGGA 377
|||||||||||| ||||| || || |||||| |||| || || |||||||| ||||||||
Sbjct 228 CATGATGAAGATCATGGAGGTGTGTAAAGCTAAAGGTTTTGTATACGGAATTGTACCGGA 287
Query 378 AAAAGGTAAACCGGTAACCGGTTCTTCAGACAGTTTAAGACGTTGGTGGAAAGAAAACGT 437
||| |||||||| ||||||||||||| || || ||||||||||||||||||||||||||
Sbjct 288 AAAGGGTAAACCAATAACCGGTTCTTCCGATAGCTTAAGACGTTGGTGGAAAGAAAACGT 347
Query 438 TCAATTCGATCAAACCGCTCCAAACGCTGTTTCTGATTACTTAACTTTAGCGGCTGCTCA 497
||| ||||| |||| ||||||| ||||| | | ||||||||| | | |||||||||
Sbjct 348 TCAGTTCGACCAAAACGCTCCAGACGCTATCACAGATTACTTAGCACTCGCGGCTGCT-- 405
Query 498 GTTAATCT-CATCA-AACGAATC-TTTAGATCC-GA--AT--TC--G-TATATT-CACAT 545
| | || || || | | |||| | || ||| | || || | | |||| |||||
Sbjct 406 GCT--GCTGCAGCAGAGCTAATCGATAAG-TCCTCATCATCCTCGAGCT-TATTACACAT 461
Query 546 GCTT-CACGAGCTACAAGACACGACTTTAGGTTCGTTGTTATCAGCTTTGATGCAACATT 604
| || || || || ||||||||||| |||| ||||| ||||||| || ||||||||||
Sbjct 462 G-TTACAGGAACTGCAAGACACGACACTAGGGTCGTTACTATCAGCGTTAATGCAACATT 520
Query 605 GCGTACCCCCACAACGGCGGTTTCCGTTGGAAAAAGG-TTTGGCTCCGCCGTGGTGGCCC 663
|| | || ||||| |||||||||||||| || ||||| || |||||||| |||||| ||
Sbjct 521 GCATGCCGCCACAGCGGCGGTTTCCGTTAGAGAAAGGAATT-GCTCCGCCATGGTGG-CC 578
Query 664 AAC-GGGACGGAG-TTATGGTGGGGAGAGCAAGGAGCTGCGGCGTTTGAGCATGGTCCGC 721
|| ||||||||| || ||||||||||| |||||| ||||| |||||| ||| | |
Sbjct 579 GACGGGGACGGAGCTT-TGGTGGGGAGAACAAGGA---GCGGCACATGAGCACGGTGCAC 634
Query 722 CTCCATATCGGAAA-CCGCACGATTTGAGAAAAGCTTGGAAAGTGAGCGTTTTAGCGGCT 780
| ||||||| |||| |||||||||||||||||| |||||||||| || ||| | ||||||
Sbjct 635 CGCCATATC-GAAAGCCGCACGATTTGAGAAAATCTTGGAAAGTTAGTGTTCTCGCGGCT 693
Query 781 GTGATTAAACACATGTCGCCGAATTTGGAGA-GAGTGAGACGGCTCGCGAGACAGTCCAA 839
|||||||||||||||||||||||||||| || |||||||||| || |||||||| || ||
Sbjct 694 GTGATTAAACACATGTCGCCGAATTTGG-GAAGAGTGAGACGTCTGGCGAGACAATCTAA 752
Query 840 GTGTTTGCAAGATAAGATGATGGCGAAAGAGACCGATACCTGGTCTCGTGTGTTGAATCA 899
||||||||||||| |||||||| |||||||| ||||| ||||||||||| || || ||
Sbjct 753 AAGTTTGCAAGATAAAATGATGGCTAAAGAGACTGATACTTGGTCTCGTGTCTTAAACCA 812
Query 900 AGAAGAAGCTCGTCTCAAT--C---G-CCTCAAGATCTCAGATGA-CGAGGACGA 947
||||||||||| ||||||| | | |||||||||||| || || | |||||||
Sbjct 813 AGAAGAAGCTCTTCTCAATATCAAAGACCTCAAGATCTCGGAAGATC-AGGACGA 866
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80170270365
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5