BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496739
Length=2154
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65160.1 | Symbols: TPR14 | tetratricopeptide repeat (TPR)-c... 3051 0.0
> AT5G65160.1 | Symbols: TPR14 | tetratricopeptide repeat (TPR)-containing
protein | chr5:26031184-26033889 REVERSE LENGTH=2276
Length=2276
Score = 3051 bits (1652), Expect = 0.0
Identities = 1911/2035 (94%), Gaps = 21/2035 (1%)
Strand=Plus/Plus
Query 1 GAAACGGAAGAATCTTCGTTCCTCTTTACCGTCCGGCCGAGAAAAGCCTAATCACATCTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAAACGGAAGAATCTTCGTTCCTCTTTACCGTCCGGCCGAGAAAAGCCTAATCACATCTT 60
Query 61 TCTTCTCTATTCCTCTTTTTAAAACATGAGa--tctctctcttctcatcaccattgatct 118
||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 TCTCCTCTATTCTTCTTTTTAAAACATGAGATCTCTCTCTCTTCTCATCACCATTGATCT 120
Query 119 ctggttttcta-aatctcttcttctgattcttattctatttctgaattttgatttgttct 177
||||||||| | ||||| ||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 121 CTGGTTTTC-ATAATCTATTCTT-TGATTCTTATTCTATCTCTGAATTTTGATTTGTTCT 178
Query 178 ttGGGAGG-GAGAGGGTTTT-CTAATTC-CGAGGCCGGTTCTTGAGATGGAGGAGAACAC 234
| ||| || || |||||||| | ||||| | |||||||||||||||||||||||||||||
Sbjct 179 TCGGG-GGAGATAGGGTTTTAC-AATTCTC-AGGCCGGTTCTTGAGATGGAGGAGAACAC 235
Query 235 GGCGGTGGCTGCGGCGGAGAGAAGATCAGGTTGCGGGTTATTGAGTGTAATGTTTGGTAG 294
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 236 GGCGGTGGCTGCGGCGGAGAGAAGATCAGGTTGTGGTTTATTGAGTGTAATGTTTGGTAG 295
Query 295 ACGTGGCTTGTGGTCCAAGAAATCTACCGCGGCCGATAACGGTAGCCAGAAAAGCACATC 354
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 296 ACGTGGCTTGTGGTCCAAGAAATCTACCGCTGTCGATAACGGTAGCCAGAAAAGCACATC 355
Query 355 TACGGCTGCGACCGCCACAAGCAACATTCAATTCACTAAATCTCCGGGCACCGAGTTAAA 414
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 TACGGCTGCGACCGCAACAAGCAACATTCAATTCACTAAATCTCCGGGCACCGAGTTAAA 415
Query 415 GAAGCCTCGTGATGATCAGAAGGTTTCCGCTGAGCCAATCCAGAATAACAAGATCCAGAA 474
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 416 GAAGCCGCGTGATGATCAGAAAGTTTCCGCTGAGCCAATCCAGAATAACAAGATCCAGAA 475
Query 475 CCAA-CAAAATCACAACCAGAGATCCGTAGTTCCATCAAAACCCTCGTCGAATCAATACC 533
||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 476 -CAACCAAAATCACAACCAGAGATCCGTAGTTCCATCAAAACCCTCGTCAAATCAGTACC 534
Query 534 CTAATAACCATCAATTAGGGAGTTACGAGAATCACCAACGAAGTAGTTATAACAACAATA 593
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 535 CTAATAACCATCAATTAGGGACTTACGAGAATCACCAACGAAGTAGTTATAACAACAATA 594
Query 594 GTAATAGCGTTGATCCATATC------GAGGAGGACAGAGGAAAGTGCCAAGAGAAGCCA 647
||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 595 GTAATAGTGTTGATCCATATCGAGGAGGAGGAGGACAGAGGAAAGTGCCAAGAGAAGCCA 654
Query 648 TTGGTTTATCGGGTGAGCTTGAAAGCATGATTACGGATCATCAGAAAGCAAAAGGAACCA 707
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 655 TTGGTTTATCGGGTGAGCTTGAAAGCATGATCACGGATCATCAGAAAGCAAAAGGAACCA 714
Query 708 GTGGATTGGTTCGTGCTTCTTCTAGCAATGTCATGTTATATGGTAATCTTGGCAATTTGA 767
||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||
Sbjct 715 ATGGATTGGTTCGTGCATCTTCTAGCAATATAATGTTATATGGTAATCTTGGCAATTTGA 774
Query 768 ATCAGACCGGACCAGTAACGGCTGGTGTAAATTACGGTAATAACAATGGATATGGCGTGA 827
||||||| ||||| ||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 775 ATCAGACTGGACCTGTAACTGCGGGTGTAAATTACGGTAATAACAATGGATATGGCGTGA 834
Query 828 AGAGGGCGACTATGGGGGATGCAACGGGGACGACAACAAAGAGTCAAGATCAATCAGGAT 887
||||| |||| ||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 835 AGAGGACGACAATGGGGGCTGCAACGGCGACGACAACAAAGAGTCAAGATCAATCAGGAT 894
Query 888 CTTTGTGTAGAGCAATCTCAACACGAATGGATCCGGAAACGTTAAAGATCATGGGGAATG 947
||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||
Sbjct 895 CTTTGTGTAGAGCAATCTCAACAAGAATGGATCCGGAAACTTTGAAGATCATGGGGAATG 954
Query 948 AAGATTACAAGAGCGGGAATTTTGCAGAGGCGTTAGCATTGTATGATGCTGCCATTGCGA 1007
|||||||||||| |||||||| |||||||| ||||||||||||||||| |||||||| |
Sbjct 955 AAGATTACAAGAATGGGAATTTCGCAGAGGCTTTAGCATTGTATGATGCAGCCATTGCAA 1014
Query 1008 TTGATCCCAACAAAGCTGCGTACCGTAGCAACAAGAGTGCGGCTTTGACCGCGCTAGGGA 1067
||||||| ||||||||||| ||||||||||||||||| |||||||||||||| |||||||
Sbjct 1015 TTGATCCAAACAAAGCTGCTTACCGTAGCAACAAGAGCGCGGCTTTGACCGCCCTAGGGA 1074
Query 1068 GAATCCTTGAAGCGGTTTTTGAATGCAGAGAAGCAATCAGAATTGAGCCTCATTACCATA 1127
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1075 GAATCCTTGACGCGGTTTTTGAATGCAGAGAAGCAATCAGAATTGAGCCTCATTACCACA 1134
Query 1128 GAGCACATCATCGATTGGGTAACTTGTACCTCAGGTTAGGAGAAGTGGAGAAATCGATAT 1187
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 GAGCACATCATAGGTTGGGTAACTTGTACCTCAGGTTAGGAGAAGTGGAGAAATCGATAT 1194
Query 1188 ATCATTTCAAACATTCGGGTCCAGAAGCTGATCGCGAAGACATTGCAAAGGCGAAAACGG 1247
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1195 ATCATTTCAAACATTCGGGTCCCGAAGCTGATCGTGAAGACATTGCAAAGGCGAAAACGG 1254
Query 1248 TACAGACACATCTCAACAAGTGCACAGAAGCTAAGAGATTACGAGATTGGAATGGTTTGA 1307
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 TACAGACACATCTCAACAAATGCACAGAAGCTAAGAGATTACGAGATTGGAATGGTTTGA 1314
Query 1308 TTACAGAGACAACAAACACAATCTCTTCAGGAGCTGATGCAGCCCCTCAGGTCTATGCAT 1367
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 TTACGGAGACAACAAACACAATCTCTTCAGGAGCTGATGCAGCCCCTCAGGTCTATGCAT 1374
Query 1368 TGCAAGCAGAAGCCTTGTTGAAGACCCATAGACATCAAGAAGCGGATGATGCACTGTCTA 1427
||||||||||||| ||||||||||| ||||||||||||||||| |||||||| ||||||
Sbjct 1375 TGCAAGCAGAAGCTTTGTTGAAGACACATAGACATCAAGAAGCTGATGATGCTTTGTCTA 1434
Query 1428 GATGTCCGGTTTTCGATGGGGACACCAGCACTAGGTACTATGGACCGGTCGGTTATGCTG 1487
||||||||||||||||| || | || ||||||||||| |||||||||||||||||||
Sbjct 1435 GATGTCCGGTTTTCGATATTGATGCTAGTACTAGGTACTACGGACCGGTCGGTTATGCTG 1494
Query 1488 GTTTCTTGGTCGTCCGTGCTCAGGTTCACTTGGCCTCTGGCAGATTCGACGAAGCAGTGG 1547
||||||||||||||||||||||||||||||| || ||||||||||||||||| || ||||
Sbjct 1495 GTTTCTTGGTCGTCCGTGCTCAGGTTCACTTAGCGTCTGGCAGATTCGACGAGGCGGTGG 1554
Query 1548 AAGCGATCCAACGCGCCGGAAAGCTGGACGGGAATAACCGAGAGGTGATGATGGTTTCAC 1607
| ||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1555 AGGCGATCCAACGCGCCGGGAAGCTGGACGGGAATAACCGAGAGGTGATTATGATTTCAC 1614
Query 1608 GAAGGGCACAAGCGGTGACTGAAGCTCGATTTAAAGGAAACGAGCTGTTTAAAGCCGGGC 1667
|| ||||||||||||||||||||||||| |||||||||||||||||||||||| | || |
Sbjct 1615 GACGGGCACAAGCGGTGACTGAAGCTCGGTTTAAAGGAAACGAGCTGTTTAAATCTGGAC 1674
Query 1668 GGTTCCAGGAAGCGTGCATTGCTTATGGTGAGGGACTAGACCACGATCCACGAAACTCCG 1727
||||||| || |||||| ||||||||||||||| |||| ||||||||||||||||| |
Sbjct 1675 GGTTCCAAGAGGCGTGCGCCGCTTATGGTGAGGGATTAGATCACGATCCACGAAACTCTG 1734
Query 1728 TTTTGCTCTGCAACCGCGCGGCTTG-CTGGTCAAGATTAGGTCAATTCGATAAATCTATT 1786
|||||||||| |||||||||||||| | |||||| ||| |||||||| |||||||||||
Sbjct 1735 TTTTGCTCTGTAACCGCGCGGCTTGTC-GGTCAAAATTGGGTCAATTTGATAAATCTATA 1793
Query 1787 GAGGATTGCACGGCGGCGCTTTCCGTTCGGCCGGGATATGGCAAGGCTCGCCTCAGAAGA 1846
||||||||||||||||| || ||||| |||||||||||||| ||||||||||||||||||
Sbjct 1794 GAGGATTGCACGGCGGCTCTCTCCGTCCGGCCGGGATATGGTAAGGCTCGCCTCAGAAGA 1853
Query 1847 GCCGATTGTAACGCCAAGATCGAAAAGTGGGAATTAGCGGTGGGTGACTATGAGATATTG 1906
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1854 GCCGATTGTAACGCCAAGATCGAAAAGTGGGAATTAGCGGTGGGTGACTACGAGATATTG 1913
Query 1907 AAAAAAGAGTCGCCGGAGGATGAGCAAGTTACCAGAGGATTAGCAGAGGCTCAACAACAA 1966
||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 1914 AAAAAGGAGTCGCCGGAGGATGAGCAAGTTATCAGAGGATTATCAGAGGCTCAACAACAA 1973
Query 1967 CTCATGAAACGTCGTGGATAAGACTCTTGAGAAATTTTCCGGTGATTAAGAACCA 2021
|||||||||||| ||||| |||||||||||||| ||||||||||| ||| |||||
Sbjct 1974 CTCATGAAACGTAGTGGACAAGACTCTTGAGAATTTTTCCGGTGAATAAAAACCA 2028
Score = 121 bits (65), Expect = 4e-26
Identities = 84/92 (91%), Gaps = 6/92 (7%)
Strand=Plus/Plus
Query 2064 ATGACAAATTGTGTGAATTCTTTCATTTATAttttttttttGGG-TTTGAATGATTAAAT 2122
||||||||| ||||||||||||| | || |||| |||||||| |||||||||||||||
Sbjct 2115 ATGACAAATCGTGTGAATTCTTT-A---AT-TTTTATTTTTGGGTTTTGAATGATTAAAT 2169
Query 2123 TGTTTGTATAGGAATGAGATTGTGGGAATACT 2154
||||||||||||||||||||||||||||||||
Sbjct 2170 TGTTTGTATAGGAATGAGATTGTGGGAATACT 2201
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106826759760
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5