BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496741
Length=186
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65166.1 | Symbols: | unknown protein; Has 30201 Blast hits... 254 3e-67
> AT5G65166.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:26036291-26036494
REVERSE LENGTH=204
Length=204
Score = 254 bits (137), Expect = 3e-67
Identities = 172/187 (92%), Gaps = 9/187 (5%)
Strand=Plus/Plus
Query 1 ATGAAATTCAAACAAGCAGAGCATTCGAC-AAAAGAGTATTTTTCAATGAAGAAGGATGT 59
|||||||||||||||||||||||||| || ||||||||||||||||| ||||||||| |
Sbjct 1 ATGAAATTCAAACAAGCAGAGCATTCAACAAAAAGAGTATTTTTCAACGAAGAAGGA--T 58
Query 60 GTGTGATACTGTGATTGGTCAAAGGTGGTCCTGCTCCAGACAAAGAGACATGCCACGTGT 119
||||| | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 GTGTG----T-T-ATTGGTCAAAGGTGGTCCTGCTCCAGACAAAGAGACATGCCACGTGT 112
Query 120 CACATCTCTTTCAGATTATTGGATCGTTGACTATCCTGTTGCAAGATTTGTCTGGTTTTG 179
||| |||||||||||||||||||||||||||| | |||||||||||||||||||| ||||
Sbjct 113 CACCTCTCTTTCAGATTATTGGATCGTTGACTTTTCTGTTGCAAGATTTGTCTGGGTTTG 172
Query 180 TTTATAA 186
|||||||
Sbjct 173 TTTATAA 179
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8199120213
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5