BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496742
Length=1152
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65170.1 | Symbols: | VQ motif-containing protein | chr5:26... 1485 0.0
> AT5G65170.1 | Symbols: | VQ motif-containing protein | chr5:26041174-26042406
FORWARD LENGTH=1233
Length=1233
Score = 1485 bits (804), Expect = 0.0
Identities = 1069/1188 (90%), Gaps = 54/1188 (5%)
Strand=Plus/Plus
Query 1 TCTCTCCCTCTGAACCACTACCTCTTCCTCTCTCTATCTCTGACATGGATTCCGGCAATA 60
|||||| |||||||| |||||||||||||||| | |||||| |||||| ||||||||||
Sbjct 1 TCTCTCTCTCTGAACTTCTACCTCTTCCTCTCTGTGTCTCTGCCATGGAATCCGGCAATA 60
Query 61 GTAGTAGCATGCAATCCTCAAGCGGCGGTGGTGGTGGAGGAGATCAAGAAGAGTACGACT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTAGTAGCATGCAATCCTCAAGCGGCGGTGGTGGTGGAGGAGATCAAGAAGAGTACGACT 120
Query 121 CACGCGCCGATCAATCAATCTCTGCTTTATTT-A--AC--C-ACAACAACAAC-A--CAA 171
||||||||||||||||||| |||||||||||| | || | ||||||||||| | |||
Sbjct 121 CACGCGCCGATCAATCAATTTCTGCTTTATTTAACCACAACAACAACAACAACAACCCAA 180
Query 172 CCACCGTCTCCTCCAACATCGCCGTTCCAACACAGCTTGACGCTCTCATAGCTAACTATT 231
||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 181 CCACCGTCTCCCCCAACATCGCTGTTCCAACACAGCTTGACGCTCTCATAGCTAACTACT 240
Query 232 TCAACAGTGCTTGGTCAACGGATAATTCTCTCTGGTCGACAACGGCTACAAAGCCCACCG 291
|||||| | |||||||| |||||||| |||| ||||| ||||||||||| |||||||||
Sbjct 241 TCAACACTTCTTGGTCAGCGGATAATCCTCTATGGTCTACAACGGCTACGCAGCCCACCG 300
Query 292 AGGGCTCAAGACCAGTACCACCGCCGATCTCATCAGAACAAGTCTTCTTCACAAACCCAC 351
| ||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 301 ATGGCTCTAGACCAGTACCACCGCCGATTTCGTCAGAACAAGTCTTCTTCACAAACCCAC 360
Query 352 TTCAACAAAATCTGAGAACAGTTCCAAACACAAACACAAACACAACTAGTCCCATTTGTT 411
||||||||||||||||||||||| | | ||||||||||||||||||||||||||||
Sbjct 361 TTCAACAAAATCTGAGAACAGTT-----C-CTAACACAAACACAACTAGTCCCATTTGTT 414
Query 412 CCGTCCCAACCGACAAGAAAAACGGTCTTGCGACAACACGAAATCCAAAGAAGAGATCTC 471
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 415 CCGTCCCAACCGACAAGAAAAACGGTCTTGCGACAACACGGAATCCAAAGAAGAGATCTC 474
Query 472 GAGTCTCGAGACGAGCGCCTACGACTGTTTTGACCACCGACACATCCAACTTTAGAGCCA 531
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 475 GAGTCTCGAGACGAGCGCCTACGACTGTTTTGACCACCGACACATCCAACTTCAGAGCCA 534
Query 532 TGGTTCAGGAATTCACCGGTAATCCTTCAACTCCTTTCACCGGATTATCGTCATCCTCTC 591
||||||| |||||||| |||||||||||||||||||||||||||||||| ||||| | |
Sbjct 535 TGGTTCAAGAATTCACGGGTAATCCTTCAACTCCTTTCACCGGATTATCTTCATC-T-T- 591
Query 592 CTTTTCCAAGATCAAGATTTGATATCTTCGGTTCTTCTTCTTC---ATCCTCACGACCCA 648
|| ||||||||| |||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 592 -TT--CCAAGATCACGATTTGATCTCTTCGGTTCTTCTTCTTCTTCATCCTCACGACCCA 648
Query 649 TGAAACCCTTTCCTCACAAACTCATCTCTCCATCGACGGTGAATAATCATTACCTTCCTC 708
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 649 TGAAACCCTTTCCTCACAAACTCATCTCTCCATCGACGTTGAATCATCATTACCTTCCTC 708
Query 709 CTTCTTCAGAGTACCATCATCATCAGCA--A-CAGAATCTTCTCCTTAATATGAACACAC 765
||||||||||||||||||||||||| || | |||||||||||||||||||||||||| |
Sbjct 709 CTTCTTCAGAGTACCATCATCATCATCAGCATCAGAATCTTCTCCTTAATATGAACACGC 768
Query 766 AAAACAT-TGCAAACCCTTTTCTCAGCAAC-CTTCTAT-GTGAA-AAGTCGAAACCTTCG 821
||| || | ||||||||||||||| |||| ||| || | || || ||||||| |||
Sbjct 769 CAAATATCT-CAAACCCTTTTCTCAACAACTCTT-TAACG-GATCAAC-CGAAACCCTCG 824
Query 822 AGCTTGAGAACGAGTAATGGTTTTGGACACGTTAACGTTGGAACAAACTTTGAGGGGCTG 881
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 825 AGCTTGAGAACGAGTAATGGTTTTGGACACGTGGACGTTGGAACAAACTTTGAGGGGCTT 884
Query 882 CACAACATTATCGTCTCTTCATCATCATCGATGACACAGCCAACCCTAAATACTATCCAT 941
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 885 CACAACATTATCGTCTCTTCTTCATCGTCGATGACACAGCCAACCCTAAATACTATCCAT 944
Query 942 GGATCAGACAAGAATACCGAAGCAGAACATGATAATGATCT-CTTAAGATCCATCAATGA 1000
||| |||| |||| ||| ||||| ||| |||||||| || | || ||||||||||||||
Sbjct 945 GGACCAGAAAAGAGTACTGAAGCCGAAAATGATAATAATATGCT-AAGATCCATCAATGG 1003
Query 1001 -AGATGATCAATCCATGGTGCAAAGATCGGATGGTTACACACAACCTGGTGCTTCTGGAT 1059
| |||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1004 TA-ATGATCAACCCATGGTCCAAAGATCCGATGGTTACACACAACCTGGTGCTTCTGGAT 1062
Query 1060 C-G-GA----------GG---TGAGAAATGAATGTATGGTGGAATTATCATGGATCTCTT 1104
| | || || |||||| |||| |||||||||||||||| ||||||||||
Sbjct 1063 CCGAGAATAATCTATCGGCCGTGAGAAGTGAAGGTATGGTGGAATTATCTTGGATCTCTT 1122
Query 1105 CTTCTGATTAGATGCATCTAAAACTTCTACATTATGGTCGTATTTATT 1152
||||||||||||||||||||| | || |||||||||||||||||||||
Sbjct 1123 CTTCTGATTAGATGCATCTAACATTTTTACATTATGGTCGTATTTATT 1170
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56525813670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5