BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496743
Length=1819
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65180.1 | Symbols: | ENTH/VHS family protein | chr5:260453... 2706 0.0
AT5G10060.1 | Symbols: | ENTH/VHS family protein | chr5:314574... 785 0.0
> AT5G65180.1 | Symbols: | ENTH/VHS family protein | chr5:26045361-26048031
FORWARD LENGTH=1809
Length=1809
Score = 2706 bits (1465), Expect = 0.0
Identities = 1714/1830 (94%), Gaps = 33/1830 (2%)
Strand=Plus/Plus
Query 1 GTAAGAAAAAGTAGAAATTAATAATGGCAGACGGCGTTAGGACAAAGAAAAAGGA-AACG 59
||||||||||| ||||| | ||||||||||||||||||||||||||||||| || ||||
Sbjct 1 GTAAGAAAAAGGAGAAA-T--TAATGGCAGACGGCGTTAGGACAAAGAAAAA-GAGAACG 56
Query 60 CCTTTCTAGGGTTTGGTTTATGGAA-GCTCCGCCGTAAGATTTGTTCTCCGCCGCCGCGT 118
||||||||||||||||||||| ||| |||||||||||||| |||| ||||||||||||||
Sbjct 57 CCTTTCTAGGGTTTGGTTTAT-GAACGCTCCGCCGTAAGAATTGTCCTCCGCCGCCGCGT 115
Query 119 TTT--CGTCGATTCAGAACAAAAAGATTCTTACTTTCGCCAATCTGTATCAATATCCATT 176
||| ||||||||||||||| || |||| || |||| |||||||||||||||||||| ||
Sbjct 116 TTTCCCGTCGATTCAGAACAGAAGGATTATTGCTTTTGCCAATCTGTATCAATATCCGTT 175
Query 177 TGATTATCCTTCTAA-TTCGTGTAAAAACCATACAAGGTTTTCAGCTTCTTCCCCCCTTT 235
||||||||||| ||| |||||||||||||||| ||||| |||||||||||| ||| | ||
Sbjct 176 TGATTATCCTTGTAATTTCGTGTAAAAACCATTCAAGG-TTTCAGCTTCTT-CCCTCGTT 233
Query 236 GTTCTAGGGTTTTGATTTGATTTTGGGTTGGGATGAGTAGTCCGTTCAGTGAAGAGATAC 295
|| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 234 CTT-TAGGGTTTAGATTTGATTTGGGGTTGGGATGAGTAGTCCGTTCAGTGAAGAGATAC 292
Query 296 TGATTGATAAGCTCGCCAAGCTCAACAGCACTCAGCAATCCATCCAAACTCTGTCACAGT 355
|||||||||| ||||| ||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 293 TGATTGATAACCTCGCTAAGCTCAACAGCACTCAACAATCCATCCAAACTTTGTCACAGT 352
Query 356 GGTGTATAGTCCATCGTAGTGAAGCTGAGTTGGTTGTTACGACATGGGAGAAACAGTTTC 415
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 353 GGTGTATAGTCCATCGTAGTGAAGCTGAGCTGGTTGTTACGACATGGGAGAAACAGTTTC 412
Query 416 ACAGTACAGAGATTGCTCAGAAAGTGCCTCTCTTGTACCTTGCTAACGACATTCTTCAGA 475
|||||||| |||| | |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 413 ACAGTACACAGATAGGTCAGAAAGTGCCTCTCTTGTACCTTGCTAATGACATTCTTCAGA 472
Query 476 ACAGCAAGCGTCAGGGTAATGAGTTTGTGCAAGAGTTCTGGAAAGTTCTCCCTGGTGCTC 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 473 ACAGCAAGCGTCAGGGTAATGAGTTTGTGCAAGAGTTCTGGAAAGTTCTCCCTGGTGCTC 532
Query 536 TCAAAGATCTTGTTTCCTTGGGAGATGACTATGGAAAAGGCGTTGTTTCACGATTGGTTA 595
|||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 533 TCAAAGATATTGTTTCCTTGGGAGATGACTATGGAAAAGGCGTGGTTTCGCGATTGGTTA 592
Query 596 ATATATGGGAAGAGAGAAGAGTCTTTGGGTCCCGTTCAAAGAGTCTTAAAGATGTAATGC 655
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 593 ATATATGGGAAGAGAGAAGAGTCTTTGGATCCCGTTCAAAGAGTCTTAAAGATGTAATGC 652
Query 656 TCTCAGAAGAAGCTCCTCCACCACTTGATGTCAGTAAAAAGCGATTACGGGGATCTAAAT 715
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 653 TCTCAGAAGAAGCTCCACCACCACTTGATGTCAGTAAAAAGCGATTTCGGGGATCTAAAT 712
Query 716 CTGCGAAACGAGATTCAAAATCTGCCAAGATGAAATTAACAAATGGAGGTGTGACCGAGA 775
|||| |||||||||||||||||| |||| | ||||||| ||| |||||||||| ||||||
Sbjct 713 CTGCAAAACGAGATTCAAAATCTACCAAAACGAAATTATCAAGTGGAGGTGTGTCCGAGA 772
Query 776 AGATAGTATCTGCATTCAATTTGGTTAGTGCAGAGAACTCAAATGAAGAGACAGAGATGA 835
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 773 AGATAGTATCTGCATTCAATTTGGTTCGTGCAGAGAACTCAAATGAAGAGACAGAGATGA 832
Query 836 ACAAATGCAAGTCTGCCGTTAGACGTATTAGAAAGATGGAGAAAGATGTTGAAGATGCCT 895
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 833 ACAAATGCAAGTCTGCCGTTAGACGTATCAGAAAGATGGAGAAAGATGTTGAAGATGCTT 892
Query 896 GCTCCACTGCAAAAGACCCGAGTAGAA-AATCATTGGCAAAAGAACTGGAAGAAGAAGAA 954
|||||||||||||||||||||| | || ||||||||||||||||| ||||||| ||||||
Sbjct 893 GCTCCACTGCAAAAGACCCGAGGA-AAGAATCATTGGCAAAAGAATTGGAAGAGGAAGAA 951
Query 955 AACATTCTGAGACAATCTGTTGAGAAACTTAAATCTGTTGAAGAAAGTAGGACATCTCTC 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 AACATTCTGAGACAATCTGTTGAGAAACTTAAATCTGTTGAAGAAAGTAGGACATCTCTC 1011
Query 1015 GTAAATTATCTTAGGGAAGCGCTACGCGAACAGGAATCTGAATTGGAGAATCTTCAATCT 1074
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1012 GTAAATCATCTTAGGGAAGCGCTACGGGAACAGGAATCTGAATTGGAGAATCTTCAATCT 1071
Query 1075 CAGATACAGGTAGCACAAGAACAAACTGAAGAAGCCCAAAACATGCAGAAACGGCTCAAT 1134
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1072 CAGATACAGGTAGCACAAGAACAAACCGAAGAAGCCCAAAACATGCAGAAACGGCTCAAT 1131
Query 1135 AACGAAACACCGGTTAACAATAACAACGGAACATCTGGTCAATCAGCGAAAATCACTCCT 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 AACGAAACACCGGTTAACAATAACAACGGAACATCTGGTCAATCAGCGAAAATCACTCCT 1191
Query 1195 GCCTCAATCGCTGCCATGGCGGAAATGCTAACTTCATCAACAAATTCATCAATGATTATG 1254
|||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1192 GCCTCAATCGCTGCAATGGCGGAAATGCTAACCTCATCAACAAACTCATCAATGATTATG 1251
Query 1255 CATTCTGTCCTGTCTTCATTTGCAGCTGAAGCTACACAGACTTCTGGTCTAACCAAATCA 1314
||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1252 CATTCTGTCCTCTCTTCATTTGCAGCCGAAGCTACACAAACTTCTGGTCTAACCAAATCA 1311
Query 1315 AACAGCTCAGACACAAATGCATTTGTTGTTCCTCCAAATCCTCAGCAGTATCACATAATC 1374
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 AACACCTCAGACACAAATGCATTTGTTGTTCCTCCAAATCCTCAGCAGTATCACATAATA 1371
Query 1375 CCAAATCCAGCCGCATCGCAACAGTTTCTACCTTATGGGTTTGGTAACATTCCATTAATG 1434
||||||||||||||||| |||||||||| | |||||| |||||||||||||||||||||
Sbjct 1372 CCAAATCCAGCCGCATCACAACAGTTTC--C-TTATGGATTTGGTAACATTCCATTAATG 1428
Query 1435 CCTCCTGGAGCACTTCCGCCACCGCC---TGGAGTGTTACCGCCGCATATGATGAGTAAT 1491
|| ||||||||||| ||||||||||| |||| ||| |||||||||||||||| ||||
Sbjct 1429 CCACCTGGAGCACTGCCGCCACCGCCGCCTGGAACGTTGCCGCCGCATATGATGAATAAT 1488
Query 1492 AATAATCAACCAAACGCAGCTCAGCAACAATCGCAACAACAAGGTCAGAGTTTTCAGCCA 1551
|| || |||||||| ||||||||||||||| |||||||| |||||||||||||| |||
Sbjct 1489 AACAACCAACCAAATGCAGCTCAGCAACAAGCGCAACAA---GGTCAGAGTTTTCATCCA 1545
Query 1552 CCGGGTATGATGTATTTTGGACCTCCACACCATTCTTAAGGTTAGTaaaaaacaaataaa 1611
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1546 CCGGGTATGATGTATTTTGGACCTCCACACCATTCTTAAGGTTAGTAAAAA-CAAACCAA 1604
Query 1612 aaaaTTCCAATTAGTTCTAGTTTTAGATAGTTTCTGACCCACTTTATTTTATTTGAATGT 1671
||||| ||||||||||||||| |||||||||||||||||||||||||||||||| | |||
Sbjct 1605 AAAAT-CCAATTAGTTCTAGTATTAGATAGTTTCTGACCCACTTTATTTTATTTCA-TGT 1662
Query 1672 AATGCAT-T-GTAGAAAATGGAAACGAGATCTTTTTTCTTACAAATCTTTGTACCTTGAG 1729
|| |||| | ||||||| | ||||||||||||||| ||||||||||||| ||||||||||
Sbjct 1663 AACGCATATTGTAGAAAGTAGAAACGAGATCTTTTGTCTTACAAATCTT-GTACCTTGAG 1721
Query 1730 CTGTTTAGTAAATTTTACTTCTTTGTAACATCATAGTTAGACTTATATTGTTTATCTGCT 1789
||||||||| |||||| |||||||||||||| | ||||||||| |||||| |||||||
Sbjct 1722 CTGTTTAGTCAATTTTTCTTCTTTGTAACAT-A--GTTAGACTTCTATTGTGTATCTGCG 1778
Query 1790 TTACATTTATATTTAGTATGCATTTGTTTC 1819
|||||||||||| |||||||| ||||||||
Sbjct 1779 TTACATTTATATCTAGTATGCGTTTGTTTC 1808
> AT5G10060.1 | Symbols: | ENTH/VHS family protein | chr5:3145749-3148379
REVERSE LENGTH=1985
Length=1985
Score = 785 bits (425), Expect = 0.0
Identities = 763/921 (83%), Gaps = 44/921 (5%)
Strand=Plus/Plus
Query 237 TTCTAGGGTTTTGATTTGA-TTTTGGGTTGGGATGAGTAGTCCGTTCAGTGAAGAGATAC 295
||||||||||||| ||| |||| || ||||||||||||| ||||||||| |||| |
Sbjct 304 TTCTAGGGTTTTG---TGAGTTTT-GG-TGGGATGAGTAGTGTGTTCAGTGATCAGATCC 358
Query 296 TGATTGATAAGCTCGCCAAGCTCAACAGCACTCAGCAATCCATCCAAACTCTGTCACAGT 355
|||||||||||||||| |||||||| |||| ||| || || ||| ||||||||||||| |
Sbjct 359 TGATTGATAAGCTCGCTAAGCTCAATAGCAGTCAACAGTCTATCGAAACTCTGTCACATT 418
Query 356 GGTGTATAGTCCATCGTAGTGAAGCTGAGTTGGTTGTTACGACATGGGAGAAACAGTTTC 415
|||||||| || |||| || |||| || ||| | |||||||||||||||||||||||||
Sbjct 419 GGTGTATATTCAATCGGAGCAAAGCAGAATTGATCGTTACGACATGGGAGAAACAGTTTC 478
Query 416 ACAGTACAGAGATTGCTCAGAAAGTGCCTCTCTTGTACCTTG-CTAACGACATTCTTCAG 474
||||||||||||| | ||||||||| ||||| ||||| ||| |||| || |||||||||
Sbjct 479 ACAGTACAGAGATGGATCAGAAAGTCCCTCTTTTGTAT-TTGGCTAATGATATTCTTCAG 537
Query 475 AACAGCAAGCGTCAGGGTAATGAGTTTGTGCAAGAGTTCTGGAAAGTTCTCCCTG-GTGC 533
||||| |||||||| ||||||||||||||||||||||||||||| ||||| ||| | ||
Sbjct 538 AACAGTAAGCGTCAAGGTAATGAGTTTGTGCAAGAGTTCTGGAATGTTCTTCCTAAG-GC 596
Query 534 TCTCAAAGATC-TTGTTTC-CTTGGGAGATGACTA-TGG-AAAAGGCGTTGTTTCACGAT 589
||| ||||| | ||||||| | || |||||| || ||| ||||| || ||| |||| |
Sbjct 597 TCTTAAAGA-CATTGTTTCTCAAGG-AGATGA-TAATGGCAAAAG-CGCTGTCGCACG-T 651
Query 590 -TGGTTAATATATGGGAAGAGAGAAGAGTCTTTGGGTCCCGTTCAAAGAGTCTTAAAGAT 648
|| | || ||||||||||| |||||||| ||||| || |||||||||||||||||||||
Sbjct 652 GTGATCAAGATATGGGAAGAAAGAAGAGTGTTTGGATCACGTTCAAAGAGTCTTAAAGAT 711
Query 649 GTAATGCTCTC-AGAAGAAGCTCCTCCACCACTTGATGTCAGTAAAAAGCGAT-TACGGG 706
|||||||| | |||||| | ||||| ||||||||| |||| |||||||| | || |
Sbjct 712 GTAATGCT-TGGAGAAGATGTTCCTCTGCCACTTGATATCAGCAAAAAGCGGCCT-CGCG 769
Query 707 GATCTAAATCTGCGAAACGAGATTCAAAATC-TGCCAAGAT-GAAATTAACA--AA-TGG 761
|||| |||||| | ||||| || |||||||| | ||| || ||||||| || || |||
Sbjct 770 GATCCAAATCTTCAAAACGGGAGTCAAAATCGT-CCA-GAACGAAATTAGCATCAAGTGG 827
Query 762 AGGTGTGACCGAGAAGATAGTATCTGCAT-TCAATTTGGTTAGT-GCAGAGAACTCAAAT 819
|||||| | |||||||||| ||| |||| ||| ||||||| || ||||| |||||||||
Sbjct 828 TGGTGTGGCTGAGAAGATAGCATCAGCATATCA-TTTGGTT-GTTGCAGAAAACTCAAAT 885
Query 820 GAAGA-GACAGAGATGAACAAATGCAAGTCTGCCGTTAGACGTATTAGAAAGATGGAGAA 878
||||| | | |||||||| ||||| |||||||| |||| ||| || | |||||||||||
Sbjct 886 GAAGAAG-CTGAGATGAATAAATGTAAGTCTGCAGTTAAACGAATCCGGAAGATGGAGAA 944
Query 879 AGATGTTGAAGATGCCTGCTCCACTGCAAAAGAC--CC-GA-GTAGAAAATCATTGGCAA 934
|||||||||||| |||||||| |||||||||||| || || | |||||||| ||||| |
Sbjct 945 AGATGTTGAAGAAGCCTGCTCTACTGCAAAAGACAACCCGAAG-AGAAAATCTTTGGCGA 1003
Query 935 AAGAACTGGAAGAAGAAGAAAACATTCTGAGACAATCTGTTGAGAAACTTAAATCTGTTG 994
||||| |||||||||||||| || || ||||||||| | ||||||||||||||||||||
Sbjct 1004 AAGAATTGGAAGAAGAAGAATACCTTTTGAGACAATGTATTGAGAAACTTAAATCTGTTC 1063
Query 995 AAGAAAGTAGGACATCTCTCGTAAATTATCTTAGGGAAGCGCTACGCGAACAGGAATCTG 1054
||| |||||| | || || || || | |||| || || ||||| ||||||||||| |
Sbjct 1064 AAGGAAGTAGAAGTTCCCTTGTGAACCAGCTTAAAGATGCACTACGTGAACAGGAATCCG 1123
Query 1055 AATTGGAGAATCTTCAATCTCAGATACAGGTAGC-ACAAGAACAAACTGAAGAAGCCCAA 1113
|| |||| |||||| || ||||||| |||||||| | |||||||||| || |||||||||
Sbjct 1124 AACTGGACAATCTTAAAGCTCAGATTCAGGTAGCTA-AAGAACAAACAGAGGAAGCCCAA 1182
Query 1114 AACATGCAGAAACGGCTCAAT 1134
||||||||||||||||| |||
Sbjct 1183 AACATGCAGAAACGGCTTAAT 1203
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90009577185
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5