BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496745
Length=1848
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65200.1 | Symbols: PUB38, ATPUB38 | plant U-box 38 | chr5:2... 2494 0.0
> AT5G65200.1 | Symbols: PUB38, ATPUB38 | plant U-box 38 | chr5:26048065-26049952
REVERSE LENGTH=1888
Length=1888
Score = 2494 bits (1350), Expect = 0.0
Identities = 1579/1690 (93%), Gaps = 14/1690 (1%)
Strand=Plus/Plus
Query 165 ACAACAACAAGAAGCTCCGGTCGAATTCCTCTGTTCTATTTCAAAATCAGTAATGTCTGA 224
|||| ||||| || ||||||||||||| |||||| | |||||||||||||||||||||||
Sbjct 193 ACAAGAACAACAACCTCCGGTCGAATTTCTCTGTCCGATTTCAAAATCAGTAATGTCTGA 252
Query 225 CCCTGTTGTTGTATCTTCCGGTCAAACCTTCGAACGTGTCTGTGTTCAAGTCTGTCGCGA 284
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 253 CCCTGTTGTTGTCTCTTCCGGTCAAACCTTCGAACGTGTCTGTGTTCAAGTCTGTCGCGA 312
Query 285 CCTAAACTTTCTCCCCAAACTCAACAACGACGACGACGATTCTCAACCCGATTTCTCCAA 344
||| |||||| |||||||||| |||||||||||| || |||| |||||||||||||||
Sbjct 313 CCTCAACTTTATCCCCAAACT---CAACGACGACGAAGAATCTCTACCCGATTTCTCCAA 369
Query 345 CATCATCCCTAACCTAAACATGAAATCAACAATCGATACTTGGTGCGACACCGTTGGCGT 404
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 370 CATCATCCCTAACCTAAACATGAAATCAACAATCGATACTTGGTGCGACACCGTCGGCGT 429
Query 405 CTCTCGTCCTCAGCCACCTGATTACTCCGCCGTCGAGAGAATTTTACGGCAACAGATGCC 464
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 430 CTCACGTCCTCAGCCACCTGATTACTCCACCGTCGAGAGAATTTTACGGCAACAGATGCC 489
Query 465 TCCGCCGGACGTTGAGATTCGTGTCTCCGAGCAAGAGCTTCTCAGTGCTGTAGCTCACCG 524
||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 490 TCCACCGGACGTCGAGATTCGTGTCTCCGAGCAAGAGCTTCTCAGAGCTGTAGCTCACCG 549
Query 525 AGCTCCGATGATTATTCACCACGCTGATTCTGAACTCATGGGAAGGAGAGATTTCAACAA 584
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 AGCTCCGATGATAATTCACCACGCTGATTCTGAACTCATGGGAAGGAGAGATTTCAACAA 609
Query 585 CTCCACGACCTCCTCTGATGAATCTGTAATCGTTGCTCAGAGTCCTTTCACTCCTCTTCC 644
|||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 610 CTCCACGACCTCTTCTGATGAATCTGTAATCGTTGCTCACAGTCCATTCACTCCTCTTCC 669
Query 645 TTTAACAAC-ACGACCCGCTTGCTTCTCTCCATCTCCATCATCTTCTTCCTCCGAAATCG 703
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 TTTAACAACTA-GACCCGCTTGCTTCTCTCCATCTCCATCATCTTCTTCCTCCGAAATCG 728
Query 704 AAACCCTAACGCATCACAATTTCTTCTCTAGTTCAACTTCCACCGCCACAGAAGCGGACG 763
||||||||||||| |||| ||||||||||| ||| ||||||||||||||||||| |||||
Sbjct 729 AAACCCTAACGCACCACACTTTCTTCTCTAATTCTACTTCCACCGCCACAGAAGAGGACG 788
Query 764 AAGAGATTTACAACAAGCTTAAGAGCAGTGAGATTTTCGATCAAGAGCAAGGTTTGATTA 823
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 789 AAGTGATTTACAACAAGCTTAAGAGCAGTGAGATTTTTGATCAAGAGCAAGGTTTGATTA 848
Query 824 TGATGAGGAAGATGACTCGTACTAAAGATGAAGCTAGGGTTTCGCTTTGTTCTCCTCGGA 883
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 849 TGATGAGGAAGATGACTCGTACTAATGATGAAGCTAGGGTTTCGCTTTGTTCTCCTCGGA 908
Query 884 TTCTTTCTCTGTTGAAGAACATGATTGTTTCGAGATACAGTTTAGTGCAGACGAATTCGT 943
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 909 TTCTTTCTTTGTTGAAGAATATGATTGTTTCGAGATACAGTTTAGTGCAGACGAACGCGT 968
Query 944 TAGCTTCGCTTGTGAATCTATCTTTGGATAAGCAGAACAAATTGACGATTGTTCGGTTAG 1003
|||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 969 TAGCGTCGCTTGTGAATCTGTCTTTGGATAAGAAGAACAAATTGACGATTGTTCGGTTAG 1028
Query 1004 GATTTGTTCCGATTTTGATCGATGTTTTGAAATCAGGATCTAGAGAAGCTCAAGAACACG 1063
|||||||||||||||||||||||||| |||| || || ||||||||||||||||||||||
Sbjct 1029 GATTTGTTCCGATTTTGATCGATGTTCTGAAGTCGGGGTCTAGAGAAGCTCAAGAACACG 1088
Query 1064 CAGCGGGATCAATCTTTAGTCTTTCTCTTGAAGATGATAATAAAATGCCGATTGGTGTTT 1123
|||| ||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1089 CAGCTGGAACAATCTTTAGTCTTTCTCTTGAAGATGATAATAAAATGCCTATTGGAGTTT 1148
Query 1124 TAGGAGCGCTTCAGCCATTGCTTCACGCTTTACGAGCTGCTGAGAGTGATCGGACGCGGC 1183
|||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 1149 TAGGAGCGCTTCAGCCATTGCTTCACGCGTTACGTGCAGCTGAGAGTGATCGGACGCGGC 1208
Query 1184 ATGATTCGGCTCTCGCGCTTTACCATCTGTCGTTGAATCAGACGAATCGGTCGAAGCTCG 1243
|||||||||||||||||||||||||| || ||||||||||||||||||| || |||||||
Sbjct 1209 ATGATTCGGCTCTCGCGCTTTACCATTTGACGTTGAATCAGACGAATCGATCAAAGCTCG 1268
Query 1244 TTAGGCTTGGAGCAGTTCCAGCGCTTTTCTCGATGGTTAGATCAGGTGAATCGGCGAGTA 1303
||||||||||||| || ||||||||||||||||||||||| || |||||||||||||| |
Sbjct 1269 TTAGGCTTGGAGCGGTACCAGCGCTTTTCTCGATGGTTAGGTCCGGTGAATCGGCGAGCA 1328
Query 1304 GAGCATTGTTGGTGATCTGTAATTTAGCGTGTTGTAGCGAAGGACGATCAGCAATGCTTG 1363
| ||||||||||||||||||||||||||||||||||| |||||| |||| || |||||||
Sbjct 1329 GGGCATTGTTGGTGATCTGTAATTTAGCGTGTTGTAGTGAAGGAAGATCGGCGATGCTTG 1388
Query 1364 ATGCAAATGCGGTTGCGATTCTCGTAGGGAAGCTACGTGAGGAGAGGACGGATGAGCCAA 1423
|||| ||||||||||||||||| ||||||||| || | |||||| ||||||| ||||| |
Sbjct 1389 ATGCGAATGCGGTTGCGATTCTTGTAGGGAAGTTAAGGGAGGAGTGGACGGAGGAGCCGA 1448
Query 1424 CAGAGGCTCGGTCATCGTCTTCAGCTCGTGAGAATTGCGTGGCGGCGTTGTTCGCGTTGA 1483
||||||| ||||||||||| || ||||||||||||||||| |||||||||||||| ||||
Sbjct 1449 CAGAGGCCCGGTCATCGTCATCGGCTCGTGAGAATTGCGTAGCGGCGTTGTTCGCATTGA 1508
Query 1484 GCCACGAGAGTCTCCGATTCAAGGGTTTAGCGAAAGAGGCAAGAGCAGTGGAAGTGCTGA 1543
||||||||||||| |||||||| || ||||||| ||||| ||||||||||||||| |||
Sbjct 1509 GCCACGAGAGTCTTCGATTCAAAGGACTAGCGAAGGAGGCGAGAGCAGTGGAAGTGTTGA 1568
Query 1544 AGGAAGTGGAagagagaggaacagagagagcgagagagaaagcgaagaagattcttcagt 1603
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1569 AGGAAGTGGAAGAGAGAGGAACAGAGAGAGCTAGAGAGAAAGCAAAGAAGATTCTTCAGC 1628
Query 1604 tgatgagagaaagagTGCCGGAGGATGATGAAGAAGACGGTGAAGGATCAATTGATTGGG 1663
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1629 TGATGAGAGAAAGAGTGCCGGAGGATGATGAAGAAGATGGCGAAGGATCAATTGATTGGG 1688
Query 1664 ACCGAGTTATCGACTCGAACGGCTCGATTCGATCCAGATTCCGAGTTGGTGGTGGTAGAA 1723
|||||||||||||||| |||||||| ||| | || |||||||||||||||||| ||||
Sbjct 1689 ACCGAGTTATCGACTCCAACGGCTCAATTAGGTCTAGATTCCGAGTTGGTGGT---AGAA 1745
Query 1724 ACAGAATGGTCACTCAAAACTCCTCTGGCTTCTAA-GTCCCATTCCATTTGTTGTTGTAT 1782
||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1746 ACAGAGTGGTCACTCAAAACTCCTCTGGCTTCTAAAGTTCCATTCCATTTGTTGTTGTAT 1805
Query 1783 AG-A--CATTGAAAATGTTTTGTGATTGAAAtttttttGTAT-CTTGACTTGAAATATTT 1838
|| | |||| |||||||||||||||||||||||||| ||| ||||||||||||||| |
Sbjct 1806 AGTAGACATTCAAAATGTTTTGTGATTGAAATTTTTT-GTAAACTTGACTTGAAATATGT 1864
Query 1839 GAGaaaaaaa 1848
||||||||||
Sbjct 1865 GAGAAAAAAA 1874
Score = 241 bits (130), Expect = 2e-62
Identities = 155/166 (93%), Gaps = 6/166 (4%)
Strand=Plus/Plus
Query 1 CAGAAAATCACGAAAGATGAATTCAAA-CCCTTAATTCCTCTCAAAATAAAACCCAAAAC 59
||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||
Sbjct 1 CAGAAAATCACGAAAGATGAATTCAAATCCC-TAATTCCTCTC--CATAAAACCCAAAAC 57
Query 60 CCTTTTCAGATATCAAACTCACCACCAA-TCACCGACCGTTGATTTGTTGCAGATGGGTA 118
|||||||||| ||||||||||||||||| || | |||||||||||||| |||||||||||
Sbjct 58 CCTTTTCAGAAATCAAACTCACCACCAATTC-CTGACCGTTGATTTGTCGCAGATGGGTA 116
Query 119 AAAACGGACGGCTCAGATGGAATCCTTTCAACCACAGATCGTCTTC 164
|||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 117 AAAACGGACGGCTCAGATGGAATCCTTTCAGCCACAGATCGTCTTC 162
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91465392990
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5