BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg496747

Length=301
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G65207.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   398    2e-110


> AT5G65207.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G10040.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI 
BLink). | chr5:26052245-26052644 REVERSE LENGTH=400
Length=400

 Score =  398 bits (215),  Expect = 2e-110
 Identities = 283/313 (90%), Gaps = 16/313 (5%)
 Strand=Plus/Plus

Query  2    ATAGAACCAGAGATAACCGAAC-T-A-AAG-AGAT--A---GATA-AACCGATTCAATGG  51
            ||||||||| |||||||||||| | | | | ||||  |   || | |||||||| |||||
Sbjct  4    ATAGAACCAAAGATAACCGAACATCAGAGGTAGATAAACCGGAGATAACCGATTAAATGG  63

Query  52   CGGACATAGCGATTTTGGTGGCGGAGGAGTACGAGAGGAGGATGAAGCAT-C--CGGCGG  108
            |||||||||||||||||||||||||||||||||||||||||||||||||| |  ||| ||
Sbjct  64   CGGACATAGCGATTTTGGTGGCGGAGGAGTACGAGAGGAGGATGAAGCATACGACGGTGG  123

Query  109  GTTCGAGATCAGCGCCGGCGGAATTTGATTGGAGGAAGATTATTCCGGCGAAGATGACTG  168
            ||||||||||| |||||| ||||||||||||| ||||||| |||||||||||||||||| 
Sbjct  124  GTTCGAGATCATCGCCGGTGGAATTTGATTGGTGGAAGATAATTCCGGCGAAGATGACTA  183

Query  169  TTGCTTTTGACAAGATGAAGATTGAGAGTTTGAAGAAGAATCTTGAAGCTAAATCTCAGT  228
            | ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct  184  TAGCTTTTGACAAGATGAAGATTGAGAGTTTGAAGAAGAATTTTGAAGCTAAATCTGAGT  243

Query  229  TTGCTTTGGCCATCTCTCATGGCTTCTTCTCTGCTTGATTCCATTTTGTTGTTCATAGCT  288
            ||||||| ||||||||||||||||||||||||||||||||||||||||||   |||||||
Sbjct  244  TTGCTTTAGCCATCTCTCATGGCTTCTTCTCTGCTTGATTCCATTTTGTT---CATAGCT  300

Query  289  AATTTCGTTTCTT  301
            |||||||||||||
Sbjct  301  AATTTCGTTTCTT  313



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13924166473


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5