BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496754
Length=1174
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65230.1 | Symbols: AtMYB53, MYB53 | myb domain protein 53 |... 1705 0.0
AT5G10280.1 | Symbols: MYB92, ATMYB92, ATMYB64 | myb domain pro... 538 5e-152
> AT5G65230.1 | Symbols: AtMYB53, MYB53 | myb domain protein 53
| chr5:26068290-26069652 FORWARD LENGTH=1177
Length=1177
Score = 1705 bits (923), Expect = 0.0
Identities = 1099/1183 (93%), Gaps = 16/1183 (1%)
Strand=Plus/Plus
Query 1 ATGGGAAGATCTCCTAGCTCAGACGAAACCGGTCTGAAGAAAGGTCCATGGTTGCCTGAA 60
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAAGATCTCCTAGCTCAGATGAAACTGGTCTGAAGAAAGGTCCATGGTTGCCTGAA 60
Query 61 GAAGATGATAAACTCATCAATTATATCCACAAACATGGCCATAGCAGCTGGAGTGCCCTT 120
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 GAAGATGATAAACTGATCAATTATATTCACAAACATGGCCATAGCAGCTGGAGTGCCCTT 120
Query 121 CCCAAGCTCGCTGGTCTTAACAGGTGTGGGAAGAGTTGCAGGCTACGATGGACAAACTAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCCAAGCTCGCTGGTCTTAACAGGTGTGGGAAGAGTTGCAGGCTACGATGGACAAACTAT 180
Query 181 TTGAGACCGGACATTAAGCGAGGAAAATTCTCAGCTGAAGAAGAAGAGACCATCCTGAAC 240
|||||||| ||||||||||||||||||||||| || || |||||||||||||||||||||
Sbjct 181 TTGAGACCAGACATTAAGCGAGGAAAATTCTCTGCGGAGGAAGAAGAGACCATCCTGAAC 240
Query 241 CTTCATGCGGTTCTTGGCAACAAGTGGTCAATGATTGCAAGCCACTTACCTGGAAGAACT 300
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 241 CTTCATGCGGTTCTAGGCAACAAGTGGTCAATGATTGCAAGCCACTTACCTGGACGAACT 300
Query 301 GACAACGAGATCAAGAATTTCTGGAACACTCATTTGAAGAAAAAACTGATTCAGATGGGT 360
||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 301 GACAATGAGATCAAGAATTTCTGGAATACTCATTTGAAGAAAAAGCTGATTCAGATGGGT 360
Query 361 TTTGACCCCATGACTCATCGGCCAAGAACCGATGATATCTTCTCAAGCTTATCTCAGCTC 420
|||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 361 TTTGACCCCATGACCCATCAGCCAAGAACCGATGATATCTTCTCAAGTTTATCTCAGCTC 420
Query 421 ATGTCTCTGTCTAACCTAAGAGGACTTGTTGATCTGCAGCAACAGTTTCCAATTGAAGAT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 421 ATGTCTCTGTCTAACCTAAGAGGACTTGTTGATCTGCAGCAACAGTTTCCAATGGAAGAC 480
Query 481 CATGCTCGAATGAATCTCCAAACTGAGATGGCTAAGCTGCAGTTGTTCCATTACCTTCTT 540
|| || | | | |||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 481 CAAGCGCTACTTAATCTCCAAACTGAGATGGCTAAGCTCCAATTGTTCCAATACCTTCTT 540
Query 541 CAATCTCCTCCTCCTCCTA-GCAATATTAACC-CTAATGACT-TAAACATTCTCAATCTC 597
||| || ||||| |||| | | | ||| ||| | | | || ||| |||||||||||||
Sbjct 541 CAACCTTCTCCTGCTCCCATG-AGTATCAACAAC-ATTAACCCTAA-CATTCTCAATCTC 597
Query 598 CTCATCAAAGAAAACTCCAATACCAATACTCTCGACCTCGGTTTCCTCACTTCTCATCTT 657
|||||||||||||||||| ||||| || | ||||||||||||||||| | |||||||||
Sbjct 598 CTCATCAAAGAAAACTCCGTTACCAGTAATATCGACCTCGGTTTCCTCTCCTCTCATCTT 657
Query 658 CAAGACTTCAACAACAAC--C-TCCCTTCCCTCAAAACCCTAGAAGAAAACCACTTCAGT 714
|||||||||||||||||| | |||||||||||||||||||||| || || |||||||||
Sbjct 658 CAAGACTTCAACAACAACAACCTCCCTTCCCTCAAAACCCTAGACGATAATCACTTCAGT 717
Query 715 CAAAACACTTCTCCAATATGGCTCCATGAACCACCGAGCTTGAACCAAACTATGTTGCCT 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CAAAACACTTCTCCAATATGGCTCCATGAACCACCGAGCTTGAACCAAACTATGTTGCCT 777
Query 775 ACTCATGATCCTTGTGCTCAGAGTGTAGATGGTTTCAGCGGCAACCAGGCCTCCTCAAGC 834
|| ||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||
Sbjct 778 ACGCATGATCCTTGTGCTCAGAGTGTAGATGGTTTCGGCAGCAACCAAGCCTCCTCAAGC 837
Query 835 CATGATCAAGAAGTAGCAGTCACAGACTCTGTAGATTGGCCTGATCATCATCTATTTGAT 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 CATGATCAAGAAGTAGCAGTCACAGACTCTGTAGATTGGCCTGATCATCATCTATTTGAT 897
Query 895 GGCTCCATGTTTCCAGACATTTCTTATCAATCTTAAGGTATGTACGTATGTATATGTTTC 954
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 898 GATTCCATGTTTCCAGACATTTCTTATCAATCTTAAGGTATGTATGTATGTATATGTTTC 957
Query 955 ATAAGAACTTGACTGAATTTGTTTGATGTTGCTGTGCATGTGGTTCTATATATATCTATA 1014
| ||||| ||||||| ||||||||| ||| ||| ||||||||||||||||| |||||
Sbjct 958 ACAAGAAGTTGACTGGATTTGTTTGGTGTCGCTCTGCATGTGGTTCTATAT----CTATA 1013
Query 1015 TACGTTGATTCATGATGTGTGATAATGTCTTAGAATGTA---CATGTGTTCCTATGTATA 1071
|||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 1014 TACGATGATTCATGATGTGTGATAATGTCTTAGAATGTAGTACATGTGTTCTTATGTATT 1073
Query 1072 ACTCATACATGTTGTTTGTGTTGTTATAGAACATTCTATATGTTTGAATGTATCTTCATT 1131
|||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 1074 TCTCATACATGTTATTTGTGTTCTTATAGAACATTTTATATGTTTGAATGTATCTTCATT 1133
Query 1132 ACCCTAGTATGTAGAGAGACCAACCAACGATTGTTCAGATAAT 1174
||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 1134 ACCTTAGTATGTAGAGAGACCAATCAACGATTGTTCAGATAAT 1176
> AT5G10280.1 | Symbols: MYB92, ATMYB92, ATMYB64 | myb domain protein
92 | chr5:3232569-3234210 FORWARD LENGTH=1466
Length=1466
Score = 538 bits (291), Expect = 5e-152
Identities = 507/610 (83%), Gaps = 19/610 (3%)
Strand=Plus/Plus
Query 1 ATGGGAAGATCTCCTAGCTCAGACGAAACCGGTCTGAAGAAAGGTCCATGG-TTGCCTGA 59
|||||||||||||||| ||| || || | ||||| ||||||||||| ||| | |||||
Sbjct 208 ATGGGAAGATCTCCTATCTCTGATGACTCTGGTCTCAAGAAAGGTCCTTGGACT-CCTGA 266
Query 60 AGAAGATGATAAACTCATCAATTATATCCACAAACATGGCCATAGCAGCTGGAGTGCCCT 119
|||||||| ||||| |||| ||| | || |||||||| ||||| |||||||| |||||
Sbjct 267 TGAAGATGAGAAACTTGTCAACTATGTTCAAAAACATGGTCATAGTAGCTGGAGAGCCCT 326
Query 120 TCCCAAGCTCGCTGGTCTTAACAGGTGTGGGAAGAGTTGCAGGCTACGATGGACAAACTA 179
|||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 327 TCCCAAACTCGCTGGTCTTAACAGGTGTGGGAAGAGTTGCAGGCTAAGATGGACGAACTA 386
Query 180 TTTGAGACCGGACATTAAGCGAGGAAAATTCTCAGCTGAAGAAGAAGAGACCATCCTGAA 239
|||||||| ||||| ||| |||| | |||||| | || || ||| |||| ||| ||||
Sbjct 387 CTTGAGACCAGACATCAAGAGAGGGAGATTCTCTCCGGACGAGGAACAGACTATCTTGAA 446
Query 240 CCTTCATGCGGTTCTTGGCAACAAGTGGTCAATGATTGC-AAGCCACTTACCTGGAAGAA 298
|||||| | |||||||| ||||||||||||| |||||| || | | ||||| || ||||
Sbjct 447 TCTTCATTCAGTTCTTGGAAACAAGTGGTCAACGATTGCGAATC-AGTTACCAGGGAGAA 505
Query 299 CTGACAACGAGATCAAGAATTTCTGGAACACTCATTTGAAGAAAAAACTGATTCAGATGG 358
| || |||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 506 CAGATAACGAGATCAAGAATTTCTGGAACACTCATTTGAAGAAGAAGCTGATTCAGATGG 565
Query 359 GTTTTGACCCCATGACTCATCGGCCAAGAACCGATGATATCTTCTCAAGCTTATCTCAGC 418
||||||| || |||||||| || |||||||||||| || |||||| ||||||||||||
Sbjct 566 GTTTTGATCCAATGACTCACCGTCCAAGAACCGAT-AT--CTTCTCCGGCTTATCTCAGC 622
Query 419 TCATGTCTCTGTCT---AACCTAAGAGGACTT-GTTGATCTGCAGCAACAGTTTCCAATT 474
|||||||| ||||| ||||| ||||| ||| ||||||||||| ||||||||||| |||
Sbjct 623 TCATGTCTTTGTCTTCTAACCTGAGAGG-CTTTGTTGATCTGCAACAACAGTTTCCTATT 681
Query 475 GA--A-GATCATGCTCGAATGAATCTCCAAACTGAGATGGCTAAGCTGCAGTTGTTCCAT 531
|| | || || || | | || |||||||| |||||||| || || || ||||||||
Sbjct 682 GATCAAGAACACACTATACTCAAACTCCAAACCGAGATGGCCAAACTCCAATTGTTCCAA 741
Query 532 TACCTTCTTCAATCTCCTCCTCC-TCC-TAGCAATATTAACCCTAATGACTTAAACATTC 589
|||||||||||| | | || ||| | || |||| |||||||||||||||| ||| ||
Sbjct 742 TACCTTCTTCAA-C-CGTCTTCCATGAGTAACAATGTTAACCCTAATGACTTTGACACTC 799
Query 590 TCAATCTCCT 599
||| ||||||
Sbjct 800 TCAGTCTCCT 809
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57630225660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5