BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496756
Length=1166
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65250.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1550 0.0
> AT5G65250.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:26078533-26080198
REVERSE LENGTH=1216
Length=1216
Score = 1550 bits (839), Expect = 0.0
Identities = 1050/1146 (92%), Gaps = 37/1146 (3%)
Strand=Plus/Plus
Query 52 TGGACGTCAAGGTCGTAGCCATTACTTGCAATGACCTGAG-TTTTTCTCAGTCACTAGTC 110
||||||||||||||||||||||| |||||||||||||||| ||| | |||||||| |||
Sbjct 69 TGGACGTCAAGGTCGTAGCCATTTCTTGCAATGACCTGAGATTTAAC-CAGTCACTTGTC 127
Query 111 ACAGACCCGAAAAGACAATAATGTCCTTATCGCTTCCTTCTCGATACGCTCTCTTCTCTG 170
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 128 ACAGACCCGAAAAGACGATAATGTCCTTATCGCTTCCTTCTCGATACGCTCTCTTCTCCG 187
Query 171 GCTCGACTCCTGTTCGCATCAGC---AGGAGCAACCTCTGCTTCGCAGTCTCCGCCGTAC 227
||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||
Sbjct 188 GCTCGACTCCTGTTCGCATCAGCAGGAGGAGCAACCTCTGCTTCGCCGTCTCCGCCGCAC 247
Query 228 GAACTTCTCGCCGGGATTCTATATCATTCCCTCAGCCTATCCTCCTCCGCCACGTCATCT 287
|| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 248 GAGCTTCTCGCCGGGATTCTATATCATTCCCCCAGCCTATCTTCCTCCGCCACGTCATCT 307
Query 288 CTACCCGGTCGAATTTCGAGATCGATCGAGACTATAGAGCTCATGCGTCTTCTATCGGAT 347
|||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 308 CTACCCAGTCGAATTTCGAGATCGATCGAAATTATAGAGCTCATGCGTCTTCTATCGGAT 367
Query 348 CATACGAGGATAGCTCTTCTTCTAACGAACTAGAAGACGCCAATTCCGATGGTTTCGATT 407
||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 368 CATTCGAGGATAGCTCTTCTTCTAACTTACTAGAAGACGCCAGTTCCGATGGTTTCGATT 427
Query 408 TGGGCAGCTTTGTTTCTTTCGCGGAAGCGCTTTGTATTTTATCTTCCGCCGTGATTTCGG 467
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 428 TGGGCAGCTTTGTTTCTTTCGCGGAAGCGCTTTGTATTTTATCATCCGCCGTGATTTCAG 487
Query 468 TGGTTCTCGCGGTGAATTACGTGGTGGTAGGTGAAATTGGGAAAAAGGTCTTGTCTTTAG 527
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 488 TGGTTCTCGCGGTGAATTACGTGGTGGTTGGTGAAATTGGGAAAAAGGTTTTGTCTTTAG 547
Query 528 GTTTCGTTGGATTGGTTGGTTCAGTCGCCACTGGTTCGTGGCTTAGACGACGGCAATGGA 587
||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||
Sbjct 548 GTTTCGTTGGATTGGTTGGCTCAGTCGCCACTGGTTCTTGGCTTAGACGACGACAATGGA 607
Query 588 TGAGGATTTGCAAAGGAACGAGAGAAAGTGAGGGAACTAATCTAATTCGAAGGTTGGAGA 647
|||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 608 TGAGGATTTGCAAAGGCGCGAGAGAAAGTGAGGGGACTAATCTAATTCGAAGGTTGGAGA 667
Query 648 AACTTGAAAAGGATTTAAAAAGCTCTACTTCTATTGTTAGAGTTCTTTCTAGGCATCTCG 707
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
Sbjct 668 AACTTGAAAAGGATTTAAAAAGTTCGACTTCTATTGTTAGAGTTCTTTCTAGGCATCTGG 727
Query 708 AGAAGCTGGGAATTCGGTTTCGGGTCACCCGAAAATCTCTAAAGGAACCCATTTCTGAGA 767
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 728 AGAAGCTGGGAATTCGGTTTCGGGTCACACGAAAAGCTCTAAAGGAACCCATTTCTGAGA 787
Query 768 CTGCAGCTTTGGCTCAAAAGAACTCTGAGGCCACTAGAGTGTTAGCTGCACAACAAGAGA 827
|||||||||| ||||||||||| |||||||| || || || |||| |||||| |||||||
Sbjct 788 CTGCAGCTTTAGCTCAAAAGAATTCTGAGGCTACGAGGGTATTAGTTGCACAGCAAGAGA 847
Query 828 TTCTAGAGAAGGAGCTTGGCGAAATTCAAAAGGTGCTGCTTGCCT-TGCAGGAACAACAG 886
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 848 TTCTAGAGAAGGAGCTTGGCGAAATTCAAAAGGTGCTGCTTGC-TATGCAGGAACAACAG 906
Query 887 CGAAAGCAACTTGAGCTAATCCTTACAATAGCAAAGAGCAGCAAGCTGTTTGAGAGCAGT 946
||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 907 CGAAAGCAACTCGAGCTTATCCTTACAATCGCAAAGAGCAGCAAGCTGTTTGAGAGCAGT 966
Query 947 AGTAGCAAGCA-GCAAGTGCC-TAACGAACAACGGAAAGATAAAGCAGAGGAACCCTCAA 1004
| ||| | ||| |||| | || || |||||||||||| |||||||||||||||||||||
Sbjct 967 ACTAGTA-GCAAGCAA-TCCCCTAGTGAACAACGGAAAAATAAAGCAGAGGAACCCTCAA 1024
Query 1005 CACCCAAACAGATACTCGTTCAATAAACCAGACATAATGACAATGTGTAAGTTTTA-A-G 1062
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||| | |
Sbjct 1025 CACCCAAACAGATACTCGTTCAATAAAC-AGACGTAATGACAATGTGTAAGTTTTGTATG 1083
Query 1063 -AGAG--C-----GAA---AACA---C--TGA-A-T-T-TGGAGAAG-TCACTGTGGTTA 1101
| | | ||| || | | | | | | | ||||||| ||||||||||||
Sbjct 1084 GACAATACTCTTTGAAGTCAAGAGAGCGATAACACTGTATGGAGAAACTCACTGTGGTTA 1143
Query 1102 CGTAGCTGTAATTGTCATCATTGTTTTGGGTTT-GTAATTTTCACTTGTATCGAATTAAA 1160
|||||||||| || ||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1144 CGTAGCTGTA-TTATCATCATTGTTTTGGGTTTTGTAATTTTCACTTGTTTCGAATTAAA 1202
Query 1161 GTTTTT 1166
||||||
Sbjct 1203 GTTTTT 1208
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57228621300
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5