BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496759
Length=405
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65274.1 | Symbols: | ARP2/3 complex 16 kDa subunit (p16-Ar... 580 2e-165
AT4G01710.1 | Symbols: CRK, ARPC5 | ARP2/3 complex 16 kDa subun... 418 2e-116
> AT5G65274.1 | Symbols: | ARP2/3 complex 16 kDa subunit (p16-Arc)
| chr5:26085300-26085960 FORWARD LENGTH=408
Length=408
Score = 580 bits (314), Expect = 2e-165
Identities = 369/395 (93%), Gaps = 6/395 (2%)
Strand=Plus/Plus
Query 1 ATGGCTGGTGCAGCAGCACTTGTTGAAGCTGATAATGCAAATGAAATAATGGCAAGGATC 60
|||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||
Sbjct 1 ATGGCTGGTGCAGCAGCATTTGTTGAAGCTGATAATGCAGAGGAAATAATGGCAAGGATC 60
Query 61 GAAACCAAATCGCAGAAGATTGAAAGCTTACTCAAACACTACAAACATGTCGAAGCTCTG 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAAACCAAATCGCAGAAGATTGAAAGCTTACTCAAACACTACAAACATGTCGAAGCTCTT 120
Query 121 AAAACAGCTCTTGATGGTTCGCCTT-TGACAACT-TATGATGAACGTTGCAAGTCGGCTA 178
||||| ||||||||||||||||| | | |||| | || |||||||||||||| ||||
Sbjct 121 AAAACGGCTCTTGATGGTTCGCCACCTAA-AACTCTC-GACGAACGTTGCAAGTCAGCTA 178
Query 179 ATTGGATAGTTGTGCACAGAGCTATCATGGCGATAAAGGATATCGACGGAATGCTAAATT 238
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 179 ATTGGATAGTTGTGCACAGAGCTATCATGGCGATAAAGGATATCGAAGGAATGTTAAATT 238
Query 239 CTCTTGCTGCCGAGTATTACGACATTCTCATGAAGTACTTGTATAGAGGTCTTTCGACTG 298
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 239 CTCTTACTGCCGAGTATTACGACATTCTCATGAAGTACTTGTACAGAGGTCTTTCGACTG 298
Query 299 G-GAACGAACCCACATGCGAACAATGTTTGATAATTCACGAGAAACTAATAGAGAGAGCT 357
| || |||||||||||||||||| |||||||| |||||||||||||||| ||||||||||
Sbjct 299 GTGA-CGAACCCACATGCGAACAGTGTTTGATGATTCACGAGAAACTAACAGAGAGAGCT 357
Query 358 GGTCTCGGTTGCATTCTGCGTTGTCTTAGTGATAC 392
||||||||||||||||| |||||||| ||||||||
Sbjct 358 GGTCTCGGTTGCATTCTCCGTTGTCTGAGTGATAC 392
> AT4G01710.1 | Symbols: CRK, ARPC5 | ARP2/3 complex 16 kDa subunit
(p16-Arc) | chr4:735753-736604 FORWARD LENGTH=576
Length=576
Score = 418 bits (226), Expect = 2e-116
Identities = 329/378 (87%), Gaps = 10/378 (3%)
Strand=Plus/Plus
Query 22 GTTGAAGCTGATAATGCA-AATGAAATAATGGCAAGGATCGAAACCAAATCGCA-GAAGA 79
|||||||||||||| ||| || | |||||| || |||||||||||||||||| | |||||
Sbjct 36 GTTGAAGCTGATAACGCAGAA-GCAATAATCGCGAGGATCGAAACCAAATCG-AGGAAGA 93
Query 80 TTGAAAGCTTACTCAAACACTACAAACATGTCGAAGCTCTGAAAACAGCTCTTGATGGTT 139
|||||||| |||||||||| ||||||||||| |||||| ||||||| |||||||| ||||
Sbjct 94 TTGAAAGCCTACTCAAACAGTACAAACATGTAGAAGCTTTGAAAACGGCTCTTGAAGGTT 153
Query 140 CGCCTTTGACAACTTATGATGAACGTTGCAAGTCGGCTAATTGGATAGTTGTGCACAGAG 199
||||| || |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 154 CGCCTCCGAAAACTCGCGATGAACGTTGCAAGTCGGCTAATTGGATAGTTGTGCACAGAG 213
Query 200 CTATCATGGCGATAAAGGATATCGACGGAATGCTAAATTCTCTTGCTGCCGAGTATTACG 259
|| | ||||| || |||||||| ||||||||||| ||| |||||| || ||| |||||||
Sbjct 214 CTTTAATGGCCATTAAGGATATTGACGGAATGCTCAATGCTCTTGATGTCGAATATTACG 273
Query 260 ACATTCTCATGAAGTACTTGTATAGAGGTCTTTCGACTGGGAAC-GAACCCACATGCGAA 318
|||||||||||||||||||||| ||||| ||||| |||||| || || ||||| |||||
Sbjct 274 ACATTCTCATGAAGTACTTGTACAGAGGACTTTCTACTGGGGACCGA-CCCACCTGCGAT 332
Query 319 CAATGTTTGATA-ATTCACGAGAAACTAA-TAGAGAGAGCTGGTCTCGGTTGCATTCTGC 376
|| || ||| | |||||||||||||| | | |||||||||||||||||||||||||| |
Sbjct 333 CAGTGCCTGA-AGATTCACGAGAAACTCACT-GAGAGAGCTGGTCTCGGTTGCATTCTCC 390
Query 377 GTTGTCTTAGTGATACCA 394
| ||||||| ||||||||
Sbjct 391 GATGTCTTACTGATACCA 408
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19152012369
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5