BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496763
Length=576
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65300.1 | Symbols: | unknown protein; Has 30201 Blast hits... 872 0.0
> AT5G65300.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:26095147-26095771
REVERSE LENGTH=625
Length=625
Score = 872 bits (472), Expect = 0.0
Identities = 548/583 (94%), Gaps = 12/583 (2%)
Strand=Plus/Plus
Query 1 AGAAAAATGGAATGCAGAAAACACAACCACCAAAGCAACAGAGGAGTTTGTCCTTGTTGT 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 48 AGAAAAATGGAATGCAGAAAACACAACCACCAAGGCAACAGAGGAGTTTGTCCTTGTTGT 107
Query 61 TTAAGAGATCAACTCTCTCGGCTACCTAATACTACGTCGTATTACATCATTCACCGATCT 120
||||||||| |||||||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct 108 TTAAGAGATAAACTCTCTCGATTACCTAATACTACGTCGTATTACATCGTTCACAGATCT 167
Query 121 TCTTCTTC--C-TCCACCACCGTTTCGTCTTCTCCGTCGTCTCCGGCGGTGAAGGATCAT 177
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 168 TCTTCTTCTTCATCCACCACCGTTTCGTCTTCTCCGTCGTCTCCGGCGGTGAAGGATCAT 227
Query 178 CGGAGAGCTGGTTCGATGTCGATGTCTTTCGCTGTGAGGGAAGCGTTGAGTGGTAATCTG 237
||||||||||||||||||||||||||||||||||| |||||||| || | ||||||||||
Sbjct 228 CGGAGAGCTGGTTCGATGTCGATGTCTTTCGCTGTTAGGGAAGCTTTAAATGGTAATCTG 287
Query 238 ATTGAAGCTTTAGGTGGAGGATTGAA-GAAAAGCAGATCCATGGCGCATGTTCCCAAGGA 296
|| |||||||||||||||||||| || |||||||||||| ||||| ||||||||||||||
Sbjct 288 ATCGAAGCTTTAGGTGGAGGATT-AATGAAAAGCAGATCTATGGCTCATGTTCCCAAGGA 346
Query 297 TTATATTGTTAGGGATTCGACGAAGAAGAAGACGGAGAAATTGAAATCTACGTCGGTGAA 356
||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||
Sbjct 347 TTATATTGTTAGGGATTTGACGAAGAAGAAGACGGAGAAATTGAAATCTACGACGGTTAA 406
Query 357 GAAGAAGACTGGGTTTTGGACTAAGTTGCTTCATCTTAAAGGGAAAGGCGGTGGCGCCGT 416
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 GAAGAAGACTGGGTTTTGGACTAAGTTGCTTCATCTTAAAGGGAAAGGCGGTGGCGCCG- 465
Query 417 CGACGTCGGAGGGTTTGTTACTTCACGGCAACGAGTTTATTAAATGACCGACTTTAGT-T 475
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 466 --ACGTCGGCGGGTTTGTTACTTCACGGCAACGAGTTTATTAAATGACCGACTTTAGTCT 523
Query 476 TTTT--CCTGAAACGTTTATTTTTGATGTGTACAGTTACAGATAAAGAAAGTAAAATGGT 533
|||| |||||||| ||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 524 TTTTTTCCTGAAACTTTTATTTTTGACGTGTACAGTTACAGATTAAGAAAGTAAAATGGT 583
Query 534 GGAAAATAATGAAAGTCATTTCTGATTAATGAAAATAGAGATT 576
| |||||||||||||| |||||| |||||||||||| ||||||
Sbjct 584 G-AAAATAATGAAAGTGATTTCTCATTAATGAAAATGGAGATT 625
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27679014997
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5