BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496765
Length=1519
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65310.1 | Symbols: ATHB5, ATHB-5, HB5 | homeobox protein 5 ... 1744 0.0
AT2G22430.1 | Symbols: ATHB6, HB6 | homeobox protein 6 | chr2:9... 137 3e-31
> AT5G65310.1 | Symbols: ATHB5, ATHB-5, HB5 | homeobox protein
5 | chr5:26101960-26104614 REVERSE LENGTH=1833
Length=1833
Score = 1744 bits (944), Expect = 0.0
Identities = 1123/1207 (93%), Gaps = 22/1207 (2%)
Strand=Plus/Plus
Query 129 TATTAGTCAATTCTCTATTTCCATCTTATATGGATAGTGTAGACACAGAGCAAAGATCCT 188
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 178 TATTAGTCAATTCTCTGTTTCCATCTTATATGGATAGTCTAGACACAGAGCAAAGATCCT 237
Query 189 TCTTTGGAGAAAAACAAGATGAGAGACGAGAGAGGATCGTTTCTTCACGTATTGGTCGTA 248
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TCTTTGGAGAAAAAGAAGATGAGAGACGAGAGAGGATCGTTTCTTCACGTATTGGTCGTA 297
Query 249 GGTAGATCTGAATCGATAACGATATAGCTAGGCCTTGATCTAACCATT-ATATATAAACT 307
| ||||||| |||||||||| || ||||||||||||||||||||| | |||||||||
Sbjct 298 GATAGATCTTAATCGATAAC--CAT--CTAGGCCTTGATCTAACCATTCA-ATATAAACT 352
Query 308 TCATTT-CTTCTCAAGTAATTTTCAATCCCTATAGTTCCGACCAAACAAGATGAAGAGGT 366
| |||| ||||| | ||||| ||| | || |||||||||||||||||||||||| |
Sbjct 353 TTATTTCCTTCT----T-CTTTTCGATCTCAATTGTTCCGACCAAACAAGATGAAGAGAT 407
Query 367 CACGTGGAAGCTCCGATTCTTTAGCCGGTTTCTTACCAATTCGCCATTCTACAACAGACA 426
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 408 CACGTGGAAGCTCCGATTCTTTATCCGGTTTCTTACCAATTCGCCATTCTACAACAGACA 467
Query 427 AACAAATAAGTCCAAGACCAACAACCACTGGCTTTCTCTATTCCGGCGCCGGAGACTACT 486
|||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 468 AACAAATAAGCCCAAGACCAACAACTACCGGCTTTCTCTATTCCGGCGCCGGAGACTACT 527
Query 487 CGCAGATGTTCGACGCATTAGAAGACGACGGAAGTCTAGAAGACATCGGCGGTGTTGGAC 546
| |||||||| ||||||||||||||||||||||||||||| ||| ||||||| |||||||
Sbjct 528 CCCAGATGTTTGACGCATTAGAAGACGACGGAAGTCTAGAGGACCTCGGCGGCGTTGGAC 587
Query 547 ACGCGTCTTCTACGGCGGCGGAGAAAAAACGGCGGTTGGGTGTAGAGCAAGTGAAAGCGT 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 ACGCGTCTTCTACGGCGGCGGAGAAAAAACGGCGGTTGGGTGTAGAGCAAGTGAAAGCGT 647
Query 607 TAGAGAAGAATTTTGAGATTGATAACAAGTTAGAGCCAGAAAGGAAAGTGAAGCTGGCCC 666
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 648 TAGAGAAGAATTTCGAGATTGATAACAAGTTAGAGCCAGAGAGGAAAGTGAAGCTGGCTC 707
Query 667 AAGAGCTTGGGTTGCAGCCGCGTCAAGTGGCGATCTGGTTTCAGAACCGCCGTGCTCGGT 726
||||||||||||||||||| || ||||| |||||||||||||| ||||||||||||||||
Sbjct 708 AAGAGCTTGGGTTGCAGCCACGCCAAGTCGCGATCTGGTTTCAAAACCGCCGTGCTCGGT 767
Query 727 GGAAGACAAAACAGCTTGAACGTGATTATGGCGTTCTTAAGTCAAACTTTGATGCACTCA 786
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 768 GGAAGACAAAGCAGCTTGAACGTGATTACGGCGTTCTTAAGTCAAACTTTGATGCACTCA 827
Query 787 AACGCAGCCGCGACTCGCTTCAACGCGATAACGATTCCCTCCTTGGACAGATTAAAGAGC 846
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 828 AACGCAACCGCGACTCGCTTCAACGCGATAACGATTCACTCCTTGGACAGATTAAAGAGC 887
Query 847 TGAAAACAAAACTTAACGTGGAAGGGGTTAAAGGTATAGAAGAGAACGGCG-TTGAAAAA 905
||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 888 TGAAAGCAAAACTTAACGTGGAAGGGGTTAAAGGTATAGAAGAGAACGGCGCTT-TAAAA 946
Query 906 GCCA-TGGAAGCAAATCAGGCGGTGATGGCTAGTAATGAAGTCTTAGAGCTAAACCACCG 964
| || ||||||||||||| |||||||||||| |||||||||||||||||||| ||||||
Sbjct 947 G-CAGTGGAAGCAAATCAATCGGTGATGGCTAATAATGAAGTCTTAGAGCTAAGCCACCG 1005
Query 965 TCCTCCGCCGCCGCCAACGCATATTCCTACTGAAGATCCGACATCGGAGCTCGCATACGA 1024
| |||| |||| ||| ||||||||||||| || | |||||||||||||||||||| |||
Sbjct 1006 TTCTCCATCGCCACCACCGCATATTCCTACGGACGCTCCGACATCGGAGCTCGCATTCGA 1065
Query 1025 AATGTTTAGCATTTTTCCACGCACCGAAAACTTCAGAGAAGATCCTGCCGATAGCAGCGA 1084
|||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
Sbjct 1066 AATGTTTAGCATTTTTCCACGCACGGAAAACTTCAGAGACGATCCTGCCGATAGCA--G- 1122
Query 1085 CGACTCAAGTGCGGTTTTGAACGAAGAGTATAGTCCCACA-ACCGTTGAAGCAGCGGGCA 1143
||||||||| |||||||||||||||||||||||||||| | || ||||||||||| |||
Sbjct 1123 CGACTCAAGCGCGGTTTTGAACGAAGAGTATAGTCCCA-ATACGGTTGAAGCAGCTGGCG 1181
Query 1144 CGGTGGCGGCCACGGCGGTTGAAATGTCGACGATGGGTTGTTTTAGCCAATTCGTGAAGA 1203
| |||||||||||| | || |||||||||||||||||||||||||||||||||||||| |
Sbjct 1182 CAGTGGCGGCCACGACTGTAGAAATGTCGACGATGGGTTGTTTTAGCCAATTCGTGAAAA 1241
Query 1204 TGGAAGAGCATGAAGATCTGTTTAGTGGAGAGGAAGCTTGCAAGTTGTTTGCGGACAATG 1263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 TGGAAGAGCATGAAGATCTGTTTAGTGGAGAGGAAGCTTGCAAGTTGTTTGCGGACAATG 1301
Query 1264 AGCAATGGTATTGCTCCGATCAGTGGAATTCGTAAAATGTGGGGGCAGAATTGAAAGGGT 1323
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1302 AGCAATGGTATTGCTCCGATCAGTGGAATTCGTAAAATGTGGGGGCAGAATTAAAAGCAT 1361
Query 1324 AGGAAAA 1330
|| ||||
Sbjct 1362 AG-AAAA 1367
Score = 156 bits (84), Expect = 7e-37
Identities = 117/132 (89%), Gaps = 5/132 (4%)
Strand=Plus/Plus
Query 1 tctctctccctctccctatctatctctctctTACAAATTTCGATTTCTCGGGGG-ATA-A 58
||||| || |||||||| |||||||||||||||| |||||| |||||||||||| | | |
Sbjct 12 TCTCTATCTCTCTCCCTCTCTATCTCTCTCTTACCAATTTCCATTTCTCGGGGGAAAATA 71
Query 59 ATATTA-GACTTTTGAAATCTCTATCGCTAATACTTCCCGAGAAAACCTGATGAATTAAA 117
||| || ||||||||||||||| || |||||| ||||| ||||||||||||||||||||
Sbjct 72 ATAATACGACTTTTGAAATCTC--TCACTAATATTTCCCAAGAAAACCTGATGAATTAAA 129
Query 118 AGTTCATATTTT 129
||||||||||||
Sbjct 130 AGTTCATATTTT 141
Score = 124 bits (67), Expect = 2e-27
Identities = 74/77 (96%), Gaps = 2/77 (3%)
Strand=Plus/Plus
Query 1443 aaaaaaaaTTATGTGACAAAGAAATCGTTTTTTCGTCGTTTATAATATTATTTTGAATAA 1502
|||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1571 AAAAAAAA-TATGTGACGAAGAAATCGTTTTTTCGTCGTTTATAATATTATTT-GAATAA 1628
Query 1503 TTTTACTTAGGTGAATG 1519
|||||||||||||||||
Sbjct 1629 TTTTACTTAGGTGAATG 1645
Score = 80.5 bits (43), Expect = 4e-14
Identities = 52/56 (93%), Gaps = 2/56 (4%)
Strand=Plus/Plus
Query 1390 GTTCCATGCACGTGTGGCCGTAATCTTTCCAAGGTT-AA-GAGAGGGGACaaaaaa 1443
|||||||||||||||||||||||||||| ||||||| || ||||| ||||||||||
Sbjct 1496 GTTCCATGCACGTGTGGCCGTAATCTTTTCAAGGTTGAATGAGAGAGGACAAAAAA 1551
> AT2G22430.1 | Symbols: ATHB6, HB6 | homeobox protein 6 | chr2:9526095-9527830
REVERSE LENGTH=1529
Length=1529
Score = 137 bits (74), Expect = 3e-31
Identities = 145/178 (81%), Gaps = 10/178 (6%)
Strand=Plus/Plus
Query 594 CAAGTGAAAGCGTTAGAGAAGAATTTTGAGATT-GATAACAAG-TTAGAGCCAGAAAGGA 651
||||| ||||| || ||||||||||||||| || || || ||| || ||||| || ||||
Sbjct 426 CAAGTTAAAGCTTTGGAGAAGAATTTTGAG-TTAGAGAATAAGCTT-GAGCCTGAGAGGA 483
Query 652 AAGTGAAGCTGGCCCAAGAGCTTGGGT-TGCAGCCGCGTCAAGTGGC-GATCTGGTTTCA 709
|||| ||| | || ||||| ||| ||| | || || |||||||| || | | ||||||||
Sbjct 484 AAGTTAAGTTAGCTCAAGAACTT-GGTCTTCAACCTCGTCAAGTTGCTG-TTTGGTTTCA 541
Query 710 GAACCGCCGTGCTCGGTGGAAGACAAAACAGCTTGA-ACGTGATTATGGCGTTCTTAA 766
||||| ||||||||||||||||||||||||||||| | ||||| || ||||||||
Sbjct 542 AAACCGTCGTGCTCGGTGGAAGACAAAACAGCTTGAGAAA-GATTACGGTGTTCTTAA 598
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74949413685
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5