BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496768
Length=1089
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65330.1 | Symbols: AGL78 | AGAMOUS-like 78 | chr5:26110326-... 917 0.0
AT4G11250.1 | Symbols: AGL52 | AGAMOUS-like 52 | chr4:6849578-6... 789 0.0
AT4G02235.1 | Symbols: AGL51 | AGAMOUS-like 51 | chr4:980955-98... 399 2e-110
> AT5G65330.1 | Symbols: AGL78 | AGAMOUS-like 78 | chr5:26110326-26111351
FORWARD LENGTH=1026
Length=1026
Score = 917 bits (496), Expect = 0.0
Identities = 672/753 (89%), Gaps = 27/753 (4%)
Strand=Plus/Plus
Query 341 ATTGGTATCCGAACTTTGATCATTACTCTCCCCACCAACTCTCTCAATTGAATCAGTCCT 400
|||||||||| |||||||||||||||||||| || |||||||||||||||| ||||||||
Sbjct 293 ATTGGTATCCAAACTTTGATCATTACTCTCCTCAACAACTCTCTCAATTGATTCAGTCCT 352
Query 401 TAGAACAGACTCTCTCAACTTTGCAAGAAAGGCTTCGTTTTGTTGAGGCGCAGAAACAAC 460
|||||| |||||| || ||| ||||||||||||||||| |||||||||||||||||| ||
Sbjct 353 TAGAACGGACTCTTTCTACTCTGCAAGAAAGGCTTCGTATTGTTGAGGCGCAGAAACTAC 412
Query 461 AGAACATAAACTTGGTTG-ATCAGAATTTAACACCATCGTATCTGAACCAGAACCAACAC 519
|||||| |||||||| || |||||| |||||||||||||||||||||||||| |||||||
Sbjct 413 AGAACACAAACTTGG-TGCATCAGAGTTTAACACCATCGTATCTGAACCAGACCCAACAC 471
Query 520 TTGAATCCTAGCAAGTTCTCGCTGTATATGTACAACCATGGAGATGCTACTCTCTCACAA 579
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 472 TTGAATCCTAGCAAGTTCTCGCTGTTTATGTACAACCATGGAGATGCTACTCTCTCACAA 531
Query 580 CTCCCACTGTCTGCTTCACACTCCGACCAACTCACCAATTACCAAAATCACTTGATGCAG 639
||||||||||||||| |||||||| | ||||||| ||||||||| |||||||||||||||
Sbjct 532 CTCCCACTGTCTGCTCCACACTCCAATCAACTCATCAATTACCAGAATCACTTGATGCAG 591
Query 640 CAGCAGGAGCTTTATGGTTTTGGTCAGAACTTGTGTTTGGGCAACATCACCAACA-CAAA 698
|| | ||||||||||||||| |||||| || |||||||||||||| |||
Sbjct 592 CA--------T----GGTTTTGGTCAGAACATGTGTTCGGACAACATCACCAACAACAA- 638
Query 699 CTTTCAACGTCCTTACGTGTCAAACACACAAGACTACTCACCGTTACTTTCAGCACAAGC 758
|||| ||| |||| |||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 639 CTTTGAACATCCTGGCGTGTCAAACACACAAGACTACTCACCGTTACTTTCGGTACAAGC 698
Query 759 ATCTGTGGTGAATAACTACGGGTTGAATAATCACTCGATGCAGAAACAGGA-C--CTTCA 815
||||| |||||||||||||||||||||||||||| ||||||| ||||||| | |||||
Sbjct 699 ATCTGCAGTGAATAACTACGGGTTGAATAATCACTTGATGCAGCAACAGGATCAGCTTCA 758
Query 816 TGGTATTGATCGGAACGTATGTATGTTGAGTGAAATCATcaacaacaacaacaacaacGA 875
|||| |||||| |||| | |||||| |||||||||||||||||||||||||| |
Sbjct 759 TGGTTTTGATCAGAACATGTGTATGGTGAGTGAAATCATCAACAACAACAACG-----G- 812
Query 876 TCTACAACATCCTAATCTCTCAAACAAGATTCCACATGAATTCTCTTCTGATTTCCAGCA 935
|||||||||||||||||||||||||| | |||||||||||||||||||||||||| | ||
Sbjct 813 TCTACAACATCCTAATCTCTCAAACACGGTTCCACATGAATTCTCTTCTGATTTCAACCA 872
Query 936 GAACCCTTATTTTAATACGGTCGGTAACACTAGCTTCTCTCAAGATATGTTTTCAAGCTA 995
|||||||||| |||| |||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 873 GAACCCTTATGGTAATGCGGTCGGTAACATTAGCTTCTCTCAAGACATGTTTTCAAGCTA 932
Query 996 TGATGCGAGCAGTTTGC-ATCAGGCATCTTCTCTGCCACCCCTTCACAACATTCCTAACA 1054
||||||||||||| ||| | ||| |||||||||||||||| || ||||||||||||| ||
Sbjct 933 TGATGCGAGCAGTCTGCTA-CAGACATCTTCTCTGCCACCTCTCCACAACATTCCTAGCA 991
Query 1055 GTTATTGTTTTTCTGACAACTCAAGACTTCTCT 1087
||||||||||| ||| |||||||||||||||||
Sbjct 992 GTTATTGTTTTCCTGGCAACTCAAGACTTCTCT 1024
Score = 411 bits (222), Expect = 1e-113
Identities = 248/261 (95%), Gaps = 0/261 (0%)
Strand=Plus/Plus
Query 20 cttcttcttcttcttcGTCTCGTAATTCAACAAGTTTAACAAACAGACTTAAAACCATCT 79
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 11 CTTCTTCTTCTTCTTCGTCACGTAATTCAACAAGTTTAACAAATAGACTTAAAACCATCT 70
Query 80 TCAAGAAAGCTTTGGAGCTTTCGATTCTCTGTGCTATTGAGGTTTGCGTCATCTATTATG 139
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 71 TCAAGAAAGCTGAAGAGCTTTCGATTCTCTGTGCTATTGAGGTTTGCGTCATCTATTACG 130
Query 140 GACCAGGCGGTGAACTAAAAACATGGCCTAAGGAGAGAGAGACAGTGAAAGACATGGCTT 199
|||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 131 GACCAGACGGTGAACTGAGAACATGGCCTAAGGAGAGAGAGACAGTGAAAGACATGGCTT 190
Query 200 TGAGGTATAAAGAGGCAAGAAAACGCAAGAAGAGCCTCAATCTTCACGAGTTCCTCgaca 259
|||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||| |
Sbjct 191 TGAGGTATAAAGAGGCCAGAAAACGCAAGAAGAGCCGCAATCTTCATGAGTTCCTCGAGA 250
Query 260 aggagaaggacaaggacaagg 280
|||||||||||||||||||||
Sbjct 251 AGGAGAAGGACAAGGACAAGG 271
> AT4G11250.1 | Symbols: AGL52 | AGAMOUS-like 52 | chr4:6849578-6850567
FORWARD LENGTH=990
Length=990
Score = 789 bits (427), Expect = 0.0
Identities = 764/912 (84%), Gaps = 81/912 (9%)
Strand=Plus/Plus
Query 23 cttcttcttcttcGTC-TCGTAATTCAACAAGTTTAACAAACAGACTTAAAACCATCTTC 81
|||||||||||||||| | ||||| |||||||||||||||||||||||||||| |||||
Sbjct 11 CTTCTTCTTCTTCGTCAT-GTAATCCAACAAGTTTAACAAACAGACTTAAAACAATCTTT 69
Query 82 AAGAAAGCTTTGGAGCTTTCGATTCTCTGTGCTATTGAGGTTTGCGTCATCTATTATGGA 141
|||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 70 AAGAAAGCAGAAGAGCTTTCGATTCTCTGTGCTATTGACGTTTGCGTCATCTATTACGGA 129
Query 142 CCAGGCGGTGAACTAAAAACATGGCCTAAGGAGAGAGAGACAGTGAAAGACATGGCTTTG 201
|||| |||||| || | ||||||||||||||| ||||||||||||||| | |||||||||
Sbjct 130 CCAGACGGTGATCTGAGAACATGGCCTAAGGATAGAGAGACAGTGAAAAATATGGCTTTG 189
Query 202 AGGTATAAAGAGGCA-AGAAAACGCAAGAAGAGCCTCAATCTTCACGAGTTCCTCgacaa 260
||||||||||||| | ||||||||||||||| ||||||||||||| ||||||||||| ||
Sbjct 190 AGGTATAAAGAGG-ACAGAAAACGCAAGAAGTGCCTCAATCTTCATGAGTTCCTCGAGAA 248
Query 261 ggagaaggacaaggacaaggacaaggacaaggggaagacaaatttgaagaagaagcagaa 320
||||||| |||||||| |||||| | ||||||||||| || || | |
Sbjct 249 AGAGAAGGTGAAGGACAAAGACAAGTATAAGGGGAAGACGAA-TT--------A--TG-T 296
Query 321 gaagaatgtcaagTATCATGATTGGTATCCGAACTTTGATCATTACTCTCCCCACCAACT 380
|||||| | | | |||||||||| |||||||||||||||||||| || |||||
Sbjct 297 GAAGAA---C------CCTAATTGGTATCCAAACTTTGATCATTACTCTCCTCAACAACT 347
Query 381 CTCTCAATTGAATCAGTCCTTAGAACAG-ACTCTCTCAACTTTGCAAGAAAGGCTTCGTT 439
||||||||||| |||||||||||||| | || || || ||| | ||| |||||||||||
Sbjct 348 CTCTCAATTGATTCAGTCCTTAGAAC-GAACACTTTCTACTCTCCAAAAAAGGCTTCGTA 406
Query 440 TTGTTGAGGCGCAGAAACAACAGAACATAAACTTGGTTG-ATCAGAATTTAACACCATCG 498
|||||||| |||||||| ||||||||| |||||||| || |||||| |||||||||||||
Sbjct 407 TTGTTGAGTCGCAGAAAAAACAGAACACAAACTTGG-TGCATCAGAGTTTAACACCATCG 465
Query 499 TATCTGAACCAGAAC-CAACACTTGAATCCTAGCAAGTTCTCGCTGTATATGTACAACCA 557
|||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 466 TATCTGAACCAG-ACACAACACTTGGATCCTAGCAAGTTCTCGCTGTATATGTACAACCA 524
Query 558 TGGAGATGCTACTCTCTCACAACTCCCACTGTCTGCTTCACACTCCGACCAACTCACCAA 617
|||||||||||||||||||||||||||||||||||||||||| ||| | ||||||| |||
Sbjct 525 TGGAGATGCTACTCTCTCACAACTCCCACTGTCTGCTTCACAATCCAATCAACTCATCAA 584
Query 618 TTACCAAAATCACTTGATGCAGCAGCAGGAGCTTTATGGTTTTGGTCAGAACTTGTGTTT 677
|||||| ||||||||| | ||||||||||||||| |||||||
Sbjct 585 TTACCA---------GATGCAGCA--------T----GGTTTTGGTCAGAACATGTGTTT 623
Query 678 GGGCAACATCACCAACA-CAA-A-CTTTCAACGTCCTTACGTGTCAAACACACAAGACTA 734
|| |||||||||||||| ||| | |||||||| |||| |||||||||||||||||||||
Sbjct 624 GGACAACATCACCAACAACAACAACTTTCAACATCCTGGCGTGTCAAACACACAAGACTA 683
Query 735 CTCACCGTTACTTTCAGCACAAGCATCTGTGGTGAATAACTACGGGTTGAATAATCACTC 794
||||||||||||||| | || | |||||||||||||||||||||||||
Sbjct 684 CTCACCGTTACTTTC-G-----GC----G-----AATAACTACGGGTTGAATAATCACTT 728
Query 795 GATGCAGAAACAGGA-C--CTTCATGGTATTGATCGGAACGTATGTATGTTGAGTGAAAT 851
||||||| ||||||| | ||||||||| |||||| |||| | |||||| ||||||||||
Sbjct 729 GATGCAGCAACAGGATCAGCTTCATGGTTTTGATCAGAACTTGTGTATGATGAGTGAAAT 788
Query 852 CATcaacaacaacaacaacaacGATCTACAACATCCTAATCTCTCAAACAA-GATTCCAC 910
|||||| ||||||||| | | |||||||||||||||||||||||| | ||||||
Sbjct 789 CATCAATAACAACAACG-----GTT-TACAACATCCTAATCTCTCAAACACTG-TTCCAC 841
Query 911 ATGAATTCTCTT 922
|||||||| |||
Sbjct 842 ATGAATTCCCTT 853
Score = 196 bits (106), Expect = 3e-49
Identities = 123/131 (94%), Gaps = 2/131 (2%)
Strand=Plus/Plus
Query 958 GGTAACACTAGCTTCTCTCAAGATATGTTTTCAAGCTATGATGCGAGCAGTTTGC-ATCA 1016
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||| | ||
Sbjct 856 GGTAACACTAGCTTCTCTCAAGATATGTTTTCGAGCTATGATGGGAGCAGTTTGCTA-CA 914
Query 1017 GGCATCTTCTCTGCCACCCCTTCACAACATTCCTAACAGTTATTGTTTTTCTGACAACTC 1076
| |||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct 915 GACATCTTCTCTGCCACCTCTCCACAACATTCCTAACAGCTATTGTTTTTCTGACAACTC 974
Query 1077 AAGACTTCTCT 1087
|||||||||||
Sbjct 975 AAGACTTCTCT 985
> AT4G02235.1 | Symbols: AGL51 | AGAMOUS-like 51 | chr4:980955-981711
FORWARD LENGTH=591
Length=591
Score = 399 bits (216), Expect = 2e-110
Identities = 327/377 (87%), Gaps = 22/377 (6%)
Strand=Plus/Plus
Query 404 AACAGACTCTCTCAACTTTGCAAGAAAGGCTTCGTTTTGTTGAGGCGCAGAAACAACAGA 463
||| |||||| || ||| ||||||||||||||||| |||||||| ||||||||||||| |
Sbjct 230 AACGGACTCTTTCTACTCTGCAAGAAAGGCTTCGTATTGTTGAGTCGCAGAAACAACAAA 289
Query 464 ACATAAACTTGGTTG-ATCAGAATTTAACACCATCGTATCTGAACCAGAACCAACACTTG 522
||| |||||||| || |||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 290 ACAAAAACTTGG-TGCATCAGAGTTTAACACCATCGTATCTGAACCAGATCCAACACTTG 348
Query 523 AATCCTAGCAAGTTCTCGCTGTATATGTACAACCATGGAGATGCT---ACTCTCTCACAA 579
||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 349 AATCCTAGCAACTTCTCGCCGTATATGTACAACCATGGAGATGCTGCTACTCTCTCACAA 408
Query 580 CTCCCACTGTCTGCTTCACACTCCGACCAACTCACCAATTACCAAAATCACTTGATGCAG 639
||||||||||||||||||| |||| | |||||| | ||||||| ||||||||||||| |
Sbjct 409 CTCCCACTGTCTGCTTCACTCTCCAATCAACTC-C-AATTACCTGAATCACTTGATGC-G 465
Query 640 CAGCAGGAGCTTTATGGTTTTGGTCAGAACTTGTGTTTGGGCAACATCACCAACA-CAA- 697
||| | ||||||||||||||| ||||||||| |||||||||||||| |||
Sbjct 466 --GCA-----T----GGTTTTGGTCAGAACATGTGTTTGGACAACATCACCAACAACAAC 514
Query 698 A-CTTTCAACGTCCTTACGTGTCAAACACACAAGACTACTCACCGTTACTTTCAGCACAA 756
| |||||||| |||| |||||||||||||||||| ||||||||||| ||||| | ||||
Sbjct 515 AACTTTCAACATCCTGGCGTGTCAAACACACAAGAATACTCACCGTTTCTTTCGGTACAA 574
Query 757 GCATCTGTGGTGAATAA 773
||||||| ||||||||
Sbjct 575 GCATCTGCAGTGAATAA 591
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53363179335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5