BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496771
Length=1743
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65380.1 | Symbols: | MATE efflux family protein | chr5:261... 2750 0.0
> AT5G65380.1 | Symbols: | MATE efflux family protein | chr5:26122989-26126439
REVERSE LENGTH=1800
Length=1800
Score = 2750 bits (1489), Expect = 0.0
Identities = 1664/1748 (95%), Gaps = 13/1748 (1%)
Strand=Plus/Plus
Query 1 TCTCTCGTCTTCACCATTCTTCTCACTGCTTCTTTTCTCCTTATATTTCATTTCGTCCAC 60
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 2 TCTCTCGTCTTCACCATTCTTCTCACTTCTTCTTTTCTCCTTATATTTCATTTCTTCCAC 61
Query 61 ATAACT--aaaaaaaaGGAATTAGCGATGAGAGGAAGTGGCGGAGAAGAAGGATCGGAGT 118
|||||| ||||||||||||||||||||||| ||| ||| |||||||||||||||||||
Sbjct 62 ATAACTAAAAAAAAAAGGAATTAGCGATGAGGGGAGGTGATGGAGAAGAAGGATCGGAGT 121
Query 119 CGAGAGTTGCACTGTTGAAAAGTCCTCACACGGGGGAAGAAGACGGTGAAGGATTGAAGA 178
| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 122 CAAGAGTTGCACTGTTGAAAAGTCCTCACACGGCGGAGGAAGACGGTGAAGGATTGAAGG 181
Query 179 ATAGAATTTTGGTTGAGACAAAAAAGCTATGGCAAATCGTTGGTCCGGCCATATTCAGTC 238
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 182 ATAGAATTTTGGTTGAGACAAAAAAGCTATGGCAAATAGTTGGTCCGGCCATATTCAGTC 241
Query 239 GAATTACGACATATTCGATGCTTATCATCACTCAAGCTTTCGCTGGTCATCTCGGCGATC 298
|| | |||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 242 GAGTAACGACATATTCGATGCTTGTAATCACTCAAGCTTTCGCTGGTCATCTCGGCGATC 301
Query 299 TCGAACTCGCCGCCATCTCCATCGTTAATAACGTCACCGTTGGCTTCAACTTTGGCCTCT 358
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 TTGAACTCGCCGCCATATCCATCGTTAATAACGTCACCGTTGGCTTCAACTTTGGCCTCT 361
Query 359 TGCTTGGAATGGCGAGCGCGTTGGAAACGCTGTGTGGGCAAGCGTTTGGAGCGAAGAAAT 418
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 362 TGCTTGGAATGGCGAGTGCGTTGGAAACGCTGTGTGGACAAGCGTTTGGAGCGAAGAAAT 421
Query 419 ATTATATGTTGGGAGTTTATATGCAGCGTTCTTGGATTGTTCTCTTCTTTTGTTGTGTCT 478
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 422 ATCATATGTTGGGAGTTTATATGCAGCGTTCTTGGATTGTTCTCTTCTTTTGCTGTGTCT 481
Query 479 TGTTATTACCAACTTATATTTTCACTACTCCAGTTCTCAAATTTCTTGGTCAACCGGACG 538
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 482 TGTTATTACCAACTTATATTTTCACTACTCCGGTTCTTAAATTTCTTGGTCAACCGGACG 541
Query 539 ATATCGCTGAGCTTTCCGGTGTTGTCGCCATTTGGGTCATACCTCTTCATTTCGCCTTCA 598
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 542 ATATCGCTGAGCTGTCCGGTGTTGTCGCCATTTGGGTCATACCGCTTCATTTCGCCTTCA 601
Query 599 CTTTCTCTTTTCCCCTTCAACGTTTCCTCCAGTGCCAGCTCAAAAACCAAGTGACTGCGT 658
|||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 602 CTTTGTCTTTTCCCCTTCAACGTTTCCTTCAGTGCCAGCTCAAAAACCGAGTGACTGCGT 661
Query 659 ATGCCGCAGCCGTTGCATTGGTAGTTCACATTTTAGTGTGTTGGTTGTTCGTGGACGGAC 718
|||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |
Sbjct 662 ATGCGGCAGCGGTTGCATTGGTGGTTCATATTTTAGTGTGTTGGTTGTTCGTGGACGGGC 721
Query 719 TTAAACTAGGAGTCGTCGGGACTGTGGCTACGATTAGTATCTCGTGGTGGGTCAATGTTC 778
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 722 TTAAACTAGGAGTCGTGGGGACTGTAGCTACGATTAGTATCTCGTGGTGGGTCAATGTTC 781
Query 779 TTATTCTATTGGTTTACTCTACTTGTGGCGGTTGTCCACTTACTTGGACCGGCCTCTCCT 838
||||||| || ||||||||||||||||| |||||||| ||||||||||||||| | ||||
Sbjct 782 TTATTCTGTTAGTTTACTCTACTTGTGGTGGTTGTCCGCTTACTTGGACCGGCTTATCCT 841
Query 839 CTGAAGCCTTAACCGGACTTTGGGAATTCCTTAAACTCTCTGCTTCTTCCGGCGTCATGC 898
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 842 CTGAAGCCTTAACCGGACTTTGGGAATTCCTTAAACTCTCTGCTTCTTCAGGCGTCATGC 901
Query 899 TTTGTTTGGAGAATTGGTATTATCGGATTTTGATTATAATGACTGGGAATCTTCAGAATG 958
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 902 TCTGTTTGGAGAATTGGTATTATCGGATTTTGATTATAATGACTGGGAATCTTCAAAATG 961
Query 959 CTCGCATCGCCGTTGACTCCTTGTCCATATGCATGGCGATAAATGGTTGGGAGATGATGA 1018
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 CTCGAATCGCCGTTGACTCCTTGTCCATATGCATGGCGATAAATGGTTGGGAGATGATGA 1021
Query 1019 TACCTCTCGCTTTCTTCGCCGGAACCGGTGTTCGTGTGGCGAACGAATTAGGAGCTGGTA 1078
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1022 TACCTCTCGCTTTCTTCGCCGGAACCGGTGTCCGTGTGGCGAACGAATTAGGAGCTGGTA 1081
Query 1079 ATGGCAAAGGAGCAAGATTTGCGACGATTGTATCAGTAACACAATCGTTGATAATCGGAT 1138
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1082 ATGGTAAAGGAGCAAGATTTGCGACGATTGTATCGGTAACACAATCGTTGATAATCGGAT 1141
Query 1139 TGTTTTTCGGGGTGCTAATAATGCTTCTCCATACCCAAATCGCATGGATCTTCTCTTCGA 1198
||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1142 TGTTTTTTTGGGTGCTAATAATGCTTCTCCATAACCAAATCGCATGGATCTTCTCTTCGA 1201
Query 1199 GTGTAGCCGTCTTAGACGCCGTTAATAAACTTTCACTTCTGTTAGCTTTCACCGTTCTTC 1258
|||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||
Sbjct 1202 GTGTAGCCGTCTTAGACGCCGTCAATAAACTCTCACTTCTGCTAGCTTTCACCGTTCTTC 1261
Query 1259 TTAACAGCGTTCAACCGGTTCTTTCCGGTGTGGCGGTTGGATCGGGTTGGCAATCGTATG 1318
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1262 TTAACAGCGTTCAACCGGTTCTTTCCGGTGTGGCGGTTGGATCGGGTTGGCAATCGTACG 1321
Query 1319 TGGCATATATAAACTTGGGATGTTACTATTGCATTGGTGTTCCACTTGGGTTTCTCATGG 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1322 TGGCATATATAAACTTGGGATGTTACTATTGCATTGGTGTTCCACTTGGGTTTCTCATGG 1381
Query 1379 GCTGGGGTTTTAAACTCGGTGTCATGGGAATTTGGGCTGGTATGATTTTTGGAGGAACCG 1438
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1382 GCTGGGGTTTTAAACTCGGTGTCATGGGAATTTGGGGTGGTATGATTTTTGGAGGAACCG 1441
Query 1439 CTGTTCAAACAATGATCTTA-GCTTTTATTACAATGAGATGTGATTGGGAAAAAGAGGCG 1497
|||||||||| ||||||||| | |||||| |||||||||||||| |||||||||||||||
Sbjct 1442 CTGTTCAAACCATGATCTTAAG-TTTTATCACAATGAGATGTGACTGGGAAAAAGAGGCG 1500
Query 1498 CAGAAAGCAAGTGCTCGTGTTAACAAATGGTCCAACACAATAAAATGATTCAAGATTTTG 1557
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 CAGAAAGCAAGTGCTCGTATTAACAAATGGTCCAACACAATAAAATGATTCAAGATTTTG 1560
Query 1558 TTGAGTCAACTATTAAATAATTTTGCAGCATAATTTTGTTTTGGAAAACTGGTGTATGCT 1617
|||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
Sbjct 1561 TTGAATCAACTATTAAATAATTTTGCAGCATAATATGGTTTTGGAAAACTGGTGTATGTT 1620
Query 1618 T-GTATCGAAATGTGATACAATATCTT-AGAGCCGGTTTATAGATTAAATATGGTCTCTG 1675
| ||||| ||||||||||||| || || |||||||||| |||||||| ||| || || |
Sbjct 1621 TTGTATCCAAATGTGATACAACATATTTAGAGCCGGTTCATAGATTACATA-GGA-TC-G 1677
Query 1676 TAAACTGCAATTACTGCAACATGGCCTTTGTGATTTTCTTTTTATAGCATGCCTTGTAAT 1735
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 ----CTGCAATTACTGCAAAATGGCCTTTGTGATTTTCTTTTTATAGCATGCCTTGTAAT 1733
Query 1736 ATTATTAG 1743
||||||||
Sbjct 1734 ATTATTAG 1741
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86194335765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5