BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496774
Length=1016
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65430.3 | Symbols: GRF8 | general regulatory factor 8 | chr... 1206 0.0
AT5G10450.4 | Symbols: GRF6 | G-box regulating factor 6 | chr5:... 795 0.0
> AT5G65430.3 | Symbols: GRF8 | general regulatory factor 8 | chr5:26148382-26150476
REVERSE LENGTH=1252
Length=1252
Score = 1206 bits (653), Expect = 0.0
Identities = 717/749 (96%), Gaps = 0/749 (0%)
Strand=Plus/Plus
Query 1 AAAATCGAGATCTTCTTCTCTAATGGCGACGACGTTAAACAGAGATCAATACGTGTACAT 60
|||| |||||||||||||||||||||||||||| |||| |||||||||||| || |||||
Sbjct 200 AAAAGCGAGATCTTCTTCTCTAATGGCGACGACCTTAAGCAGAGATCAATATGTCTACAT 259
Query 61 GGCGAAGCTTGCTGAGCAAGCTGAGCGTTACGAAGAGATGGTTCAATTCATGGAGCAGCT 120
||||||||| || |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 260 GGCGAAGCTCGCCGAGCAAGCCGAGCGTTACGAAGAGATGGTTCAATTCATGGAACAGCT 319
Query 121 CGTAAGTGGAGCTACACCGGCCGGTGAACTCACGGTTGAAGAGAGGAATCTTCTCTCCGT 180
||||||||||||||||||||||||||| || || || |||||||||||||||||||| ||
Sbjct 320 CGTAAGTGGAGCTACACCGGCCGGTGAGCTGACCGTAGAAGAGAGGAATCTTCTCTCGGT 379
Query 181 CGCGTATAAGAACGTGATCGGATCTCTTCGTGCGGCATGGAGAATCGTTTCTTCGATTGA 240
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 380 CGCGTATAAGAACGTGATTGGATCTCTTCGTGCGGCATGGAGAATCGTGTCTTCGATTGA 439
Query 241 GCAAAAGGAAGAGAGCAGGAAGAACGAAGAACACGTGTCGCTTGTTAAGGATTACAGATC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 GCAAAAGGAAGAGAGCAGGAAGAACGAAGAACACGTGTCGCTTGTTAAGGATTACAGATC 499
Query 301 TAAAGTTGAGAGTGAGCTTTCTTCGATCTGTTCTGGAATTCTCAGGTTGCTTGATTCGCA 360
||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 500 TAAAGTTGAGACTGAGCTTTCTTCGATCTGTTCTGGGATTCTCAGGTTACTTGATTCGCA 559
Query 361 TCTGATTCCTTCAGCTACTGCTAGTGAGTCTAAGGTTTTTTACTTGAAGATGAAAGGAGA 420
||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 560 TCTAATTCCTTCAGCTACTGCCAGTGAGTCTAAGGTTTTTTACCTGAAGATGAAAGGAGA 619
Query 421 TTATCATCGTTATTTGGCTGAGTTTAAATCTGGTGATGAGAGGAAAACAGCTGCGGAAGA 480
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 620 TTATCATCGTTATTTGGCTGAGTTTAAATCTGGTGATGAGAGGAAAACTGCTGCTGAAGA 679
Query 481 TACTATGATCGCTTACAAAGCTGCTCAGGACGTTGCGGTTGCTGATCTAGCACCAACACA 540
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 680 TACTATGATCGCTTACAAAGCTGCTCAGGACGTTGCAGTTGCTGATCTAGCACCTACACA 739
Query 541 TCCGATCAGGCTGGGTCTGGCTCTCAATTTCTCAGTGTTTTACTACGAGATTCTCAACTC 600
|||||||||||| ||| ||||||| || ||||||||||||||||||||||||||||||||
Sbjct 740 TCCGATCAGGCTTGGTTTGGCTCTTAACTTCTCAGTGTTTTACTACGAGATTCTCAACTC 799
Query 601 TTCAGAGAAAGCTTGTAGCATGGCCAAACAGGCTTTTGAAGAAGCCATTGCTGAGCTGGA 660
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 800 TTCAGAGAAAGCTTGTAGCATGGCGAAACAGGCTTTTGAAGAAGCCATTGCTGAGCTGGA 859
Query 661 CACATTGGGAGAGGAGTCATACAAGGACAGTACTCTCATCATGCAGTTGCTGAGGGACAA 720
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 860 CACATTGGGAGAGGAGTCATACAAGGACAGTACTCTCATCATGCAGTTGCTAAGGGACAA 919
Query 721 TCTAACCCTTTGGACCTCCGATATGCAGG 749
|||||||||||||||||||||||||||||
Sbjct 920 TCTAACCCTTTGGACCTCCGATATGCAGG 948
Score = 279 bits (151), Expect = 3e-74
Identities = 182/196 (93%), Gaps = 5/196 (3%)
Strand=Plus/Plus
Query 742 TATGCAGGAGCAGATGGATGAGGCCTGAAGGTTTAATGGAAG-AAAGACGGTTATGTAAT 800
||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 1061 TATTCAGGAGCAGATGGATGAGGCCTGAAGGTCTAATGGAAGAAAAGACGGTTATGTAAT 1120
Query 801 GTTTCTGCAACCTTAACCGGAAACCTGAGTGAGTCCAACCCCCTTTGCTGTAAAACTTGT 860
|| |||||||| |||||| ||| |||||| | ||||| |||||||||||||||||||
Sbjct 1121 GTACCTGCAACCGTAACCGAAAATCTGAGT---T-CAACCTCCTTTGCTGTAAAACTTGT 1176
Query 861 CGAAAAGAAAAGTTTGtttttttATGACAGATTATGTGCACAGCTTTGGTGTTATCTGCT 920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1177 CGAAAAGAAAAGTTTGTTTTTTTATGACAGATTATGTGCACAGCTTTGGTGTTATCTGCT 1236
Query 921 GCTCTGTACCAACTCT 936
|||||||| |||||||
Sbjct 1237 GCTCTGTATCAACTCT 1252
> AT5G10450.4 | Symbols: GRF6 | G-box regulating factor 6 | chr5:3283853-3286347
REVERSE LENGTH=1531
Length=1531
Score = 795 bits (430), Expect = 0.0
Identities = 638/740 (86%), Gaps = 7/740 (1%)
Strand=Plus/Plus
Query 13 TTCT-TCTCTAATGGCGACGACGTTAAACAGAGATCAATACGTGTACATGGCGAAGCTTG 71
|||| |||||||||||| |||| ||| |||||| || || ||||||||||||||||| |
Sbjct 76 TTCTCTCTCTAATGGCGGCGACATTAGGCAGAGACCAGTATGTGTACATGGCGAAGCTCG 135
Query 72 CTGAGCAAGCTGAGCGTTACGAAGAGATGGTTCAATTCATGGAGCAGCTCGTAAGTGGAG 131
| ||||| || |||||||||||||||||||||||||||||||| |||||||| | || |
Sbjct 136 CCGAGCAGGCGGAGCGTTACGAAGAGATGGTTCAATTCATGGAACAGCTCGTTACAGGCG 195
Query 132 CTACACCGGCCGGT-GAACTCACGGTTGAAGAGAGGAATCTTCTCTCCGTCGCGTATAAG 190
|||| || || || || ||||| ||||||||||||||||| ||||| || || || ||
Sbjct 196 CTACTCCAGC-GGAAGAGCTCACCGTTGAAGAGAGGAATCTCCTCTCTGTTGCTTACAAA 254
Query 191 AACGTGATCGGATCTCTTCGTGCGGCATGGAGAATCGTTTCTTCGATTGAGCAAAAGGAA 250
||||||||||||||||| || || || ||||| ||||| |||||||||||||| ||||||
Sbjct 255 AACGTGATCGGATCTCTACGCGCCGCCTGGAGGATCGTGTCTTCGATTGAGCAGAAGGAA 314
Query 251 GAGAGCAGGAAGAACGAAGAACACGTGTCGCTTGTTAAGGATTACAGATCTAAAGTTGAG 310
||||| ||||||||||| || |||||||||||||| ||||||||||||||||||||||||
Sbjct 315 GAGAGTAGGAAGAACGACGAGCACGTGTCGCTTGTCAAGGATTACAGATCTAAAGTTGAG 374
Query 311 AGTGAGCTTTCTTC-GATCTGTTCTGGAATTCTCAGGTTGCTTGATTCGCATCTGATTCC 369
|||||||||||| | | || |||||||| || | | | ||||| ||||||||||| ||
Sbjct 375 TCTGAGCTTTCTTCTGTT-TGCTCTGGAATCCTTAAGCTCCTTGACTCGCATCTGATCCC 433
Query 370 TTCAGCTACTGCTAGTGAGTCTAAGGTTTTTTACTTGAAGATGAAAGGAGATTATCATCG 429
|| ||| || |||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 434 ATCTGCTGGAGCGAGTGAGTCTAAGGTCTTTTACTTGAAGATGAAAGGTGATTATCATCG 493
Query 430 TTATTTGGCTGAGTTTAAATCTGGTGATGAGAGGAAAACAGCTGCGGAAGATACTATGAT 489
|| ||||||||||||| |||||||||||||||||||| ||||| |||||||| ||| |
Sbjct 494 GTACATGGCTGAGTTTAAGTCTGGTGATGAGAGGAAAACTGCTGCTGAAGATACCATGCT 553
Query 490 CGCTTACAAAGCTGCTCAGGACGTTGCGGTTGCTGATCTAGCACCAACACATCCGATCAG 549
|||||||||||| |||||||| | || | ||| ||| | ||||| || |||||||| ||
Sbjct 554 CGCTTACAAAGCAGCTCAGGATATCGCAGCTGCGGATATGGCACCTACTCATCCGATAAG 613
Query 550 GCTGGGTCTGGCTCTCAATTTCTCAGTGTTTTACTACGAGATTCTCAACTCTTCAGAGAA 609
||| |||||||| || |||||||||||||| ||||| ||||||||||| |||||||| ||
Sbjct 614 GCTTGGTCTGGCCCTGAATTTCTCAGTGTTCTACTATGAGATTCTCAATTCTTCAGACAA 673
Query 610 AGCTTGTAGCATGGCCAAACAGGCTTTTGAAGAAGCCATTGCTGAGCTGGACACAT-TGG 668
|||||||| ||||||||||||||||||||| || ||||| |||||||| ||||| | |||
Sbjct 674 AGCTTGTAACATGGCCAAACAGGCTTTTGAGGAGGCCATAGCTGAGCTTGACAC-TCTGG 732
Query 669 GAGAGGAGTCATACAAGGACAGTACTCTCATCATGCAGTTGCTGAGGGACAATCTAACCC 728
||||||| || ||||| ||||| |||||||| ||||||||||||||||||||| ||||||
Sbjct 733 GAGAGGAATCCTACAAAGACAGCACTCTCATAATGCAGTTGCTGAGGGACAATTTAACCC 792
Query 729 TTTGGACCTCCGATATGCAG 748
||||||||||||||||||||
Sbjct 793 TTTGGACCTCCGATATGCAG 812
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49782039677
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5