BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496780
Length=1844
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65470.1 | Symbols: | O-fucosyltransferase family protein |... 2580 0.0
> AT5G65470.1 | Symbols: | O-fucosyltransferase family protein
| chr5:26172131-26175033 FORWARD LENGTH=1945
Length=1945
Score = 2580 bits (1397), Expect = 0.0
Identities = 1692/1827 (93%), Gaps = 49/1827 (3%)
Strand=Plus/Plus
Query 1 TTCTTTTCAGTGTGTTgaagaagaagaagattaagattcactaaaaccccgaaaaaagt- 59
||||||| |||||||||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct 13 TTCTTTTGAGTGTGTTGAAGAAGAAGAAGATTAAAATTCACTAAAAACCCGAGAAAAGTG 72
Query 60 ---g--gaa-g-a--aagaagaagacaagagaGCATTCTGATTCATGTGACGCTGGTTTC 110
| ||| | | |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 73 GAAGAAGAAGGAAGGAAGAAGAAGACAAGAGAGCATTCTGATTCATGTGACTCTGGTTTC 132
Query 111 GTTTCTTTC--TGACTCTGCTGTGTC-TCTTTCTCGGCAAATTTCTCATCTTTCGTTCTC 167
||||||||| || |||||||||||| | |||||||||| |||||| |||||||||||||
Sbjct 133 GTTTCTTTCTGTGTCTCTGCTGTGTCGT-TTTCTCGGCATATTTCTGATCTTTCGTTCTC 191
Query 168 GGCTGGTTGTTTCGTTTCTGGGTATTGATTGATTGATT-AAAAGTCTTCAACTTTCCCGG 226
|| ||||| ||| ||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 192 GGTTGGTT-TTTGGTTTCTGGGTATTGATTGATTGATTCAAAAGTCTTCAACTTTCCTGG 250
Query 227 -AA----AT-T-GG---A--------T-CT-G---G-G-A-AG--AAAAGGATGAATCTT 258
|| || | || | | || | | | | || ||||||||||||| |
Sbjct 251 AAACTGGATCTGGGTTTATCCGTTTTTACTCGTCTGAGAAGAGAAAAAAGGATGAATCCT 310
Query 259 TATGATGCGAATGACAGAAGAGGGATTCTCTCTGTGCTATTCTTCGTCGTTTTGCTCTGC 318
||||||||||| ||||||||| ||||||||||| || | ||||||||||||||| |||||
Sbjct 311 TATGATGCGAAAGACAGAAGATGGATTCTCTCTATGTTCTTCTTCGTCGTTTTGTTCTGC 370
Query 319 AACAACGTTTCGACTTCGTCTTCTTCATCTGAAGTGATCACGATTAAGCCAAGACATTTA 378
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 371 AACAACGTTTCGACTTCGTCTTCTTCATCTGAAGTTATCACGATTAAGCCAAGACATTTA 430
Query 379 TCTTTGTTAAAGAGTGCTTTGCAACGGTCAAGTGGAGAACAGTCTGACCTATGGAGGCCA 438
|| ||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 431 TCCTTGCTAAAGAGTGCTTTACAACGGTCAAGTGGAGAACAGTCTGATCTATGGAGGCCA 490
Query 439 TTGACTGATCAAGGATGGAGTCCTTGTATTGATTTGGGAAATTCCCCTTCATTACCGGAG 498
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 491 TTGACTGATCAAGGATGGAGTCCTTGTATTGATTTGGGAAATTCTCCTTCATTACCGGAT 550
Query 499 AAAACCGCGGGATATGTTCAGGTATTTCTTGATGGGGGACTTAACCAGCAACGAATGGGG 558
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 551 AAAACCGCGGGATATGTTCAGGTATTTCTTGATGGAGGACTTAACCAGCAACGAATGGGA 610
Query 559 ATATGTGATGCAGTTGCGGTTGCCAAGATATTAAACGCCACACTCGTGATCCCGTATCTT 618
||||||||||| ||||| ||||| ||||| |||||||| |||||||||||||| ||||||
Sbjct 611 ATATGTGATGCTGTTGCAGTTGCGAAGATTTTAAACGCAACACTCGTGATCCCTTATCTT 670
Query 619 GAAGTGAATCCTGTGTGGCAAGATTCAAGTTCTTTTGTTGATATCTTCGATGTTGATCAT 678
|||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||
Sbjct 671 GAAGTGAATCCTGTGTGGCAAGATTCAAGTTCTTTTGTTGATATTTTTGATGTCGATCAT 730
Query 679 TTTATTGATGCGTTAAAAGATGACATAAGGGTGGTTAGAGAACTACCTGATGAATACTCT 738
||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 TTTATCGATTCTTTAAAAGATGACATAAGGGTGGTTAGAGAACTACCTGATGAATACTCT 790
Query 739 TGGAGTACAAGAGAGTATTACGGTACAGCAGTCCGAGAAACCCGTGTGAAAACCGCACCT 798
|||||||||||||||||||||||||||||||| || ||||| || ||||||||||| |||
Sbjct 791 TGGAGTACAAGAGAGTATTACGGTACAGCAGTACGTGAAACACGAGTGAAAACCGCGCCT 850
Query 799 GTCCATGCCTCTGCCAATTGGTATATTGAGAACGTCTCACCAGTTCTACAAAGTTATGGG 858
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 GTTCATGCCTCTGCGAATTGGTATATTGAGAACGTCTCACCAGTTCTACAAAGTTATGGG 910
Query 859 ATTGCTGCTATTTCTCCATTCTCTCACCGTCTGTCGTTCGATCATTTACCTGCTGAGATC 918
|||||||| |||||||||||||||||||| || || ||||| || |||||||||||||||
Sbjct 911 ATTGCTGCCATTTCTCCATTCTCTCACCGGCTATCATTCGACCACTTACCTGCTGAGATC 970
Query 919 CAACGGCTAAGGTGCAAAGTGAATTTCCAAGCTTTACGCTTTGTCCCTCACATTACATCA 978
||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 971 CAACGACTAAGATGCAAAGTGAATTTCCAAGCTTTACGTTTTGTCCCTCACATTACATCA 1030
Query 979 CTCGGTGATGCTCTTGTGAGCCGCCTTAGAAACCCATCATGGAGAAACAATAAGGAACTG 1038
||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||| |
Sbjct 1031 CTCGGTGATGCTCTTGTCAGCCGCCTTAGAAACCCGTCATGGAGAAGCAATAAGGAACAG 1090
Query 1039 AAAAATGTGGATCATTTAGGAGACATGACCAACCCACACAAAAGACAAGAACCCGGGAAG 1098
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1091 AAAAATGTTGATCATTTAGGAGACATGACCAACCCACACAGAAGACAAGAACCCGGGAAG 1150
Query 1099 TTTGCCGTACTTCATCTTCGCTTCGACAAGGACATGGCTGCACATTCGGCGTGTGATTTC 1158
||||| || |||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1151 TTTGCTGTGCTTCATCTTCGCTTCGACAAGGACATGGCTGCGCATTCAGCGTGTGATTTT 1210
Query 1159 GGTGGAGGCAAAGCCGAGAAGCT-TGCATTGGCGAAATACAGACAAATGATTTGGCAAGG 1217
|| ||||||||||||||||| || | | ||||||||||||||||||||||||||||||||
Sbjct 1211 GGCGGAGGCAAAGCCGAGAAACTCT-CCTTGGCGAAATACAGACAAATGATTTGGCAAGG 1269
Query 1218 AAGAGTTTTGAATTCTCAATTCACAGATGAAGAGTTAAGAAGTCAAGGACGGTGTCCTCT 1277
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1270 AAGAGTGTTGAATTCTCAATTCACTGATGAAGAGTTAAGAAGTCAAGGACGGTGTCCTCT 1329
Query 1278 AACACCAGAAGAAATGGGACTTCTTTTAGCTGCTTTCGGATTCGACAACAATACTCGTCT 1337
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1330 AACACCAGAAGAAATGGGACTTCTTTTAGCTGCTTTCGGATTCGATAACAATACTCGTCT 1389
Query 1338 CTACCTGGCATCCCACAAGGTATATGGAGGAGAAGCTAGAATCTCAACATTAAGACAAGT 1397
||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1390 CTATCTTGCATCCCACAAGGTGTATGGAGGAGAAGCTAGAATCTCAACATTAAGACAAGT 1449
Query 1398 ATTCCCAAGAATGGAAGACAAAAGAAGTCTTGCATCTTCTGAAGAACGAGCTCGAATCAA 1457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1450 ATTCCCAAGAATGGAAGACAAAAGAAGTCTTGCATCTTCTGAAGAACGAGCTCGAATCAA 1509
Query 1458 AGGCAAAGCTTCTTTATTAGCTGCACTTGATTATTACGTTAGTATGCACAGCGACATTTT 1517
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1510 GGGCAAAGCTTCTTTATTAGCTGCACTTGACTACTACGTTAGTATGCACAGCGACATTTT 1569
Query 1518 CATCTCTGCATCACCTGGAAACATGCACAATGCTCTTGTTGGTCATCGAACATTCGAGAA 1577
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1570 CATCTCCGCATCACCTGGAAACATGCACAACGCTCTTGTTGGTCATCGAACATTCGAGAA 1629
Query 1578 TCTCAAGACGATCAGACCAAACATGGCGTTAATAGGACAGCTGTTCCTCAACAAAAGCAT 1637
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1630 TCTCAAGACGATCAGACCAAACATGGCGTTAATAGGACAGCTTTTCCTCAACAAAAGCAT 1689
Query 1638 CACTTGGGTAGATTTTCAACAGGCACTTGGTGAAGGACATGTGAATAGACAAGGACAGAT 1697
|||||||||||||||||| || || |||||||||||||||||||||||||||||||||||
Sbjct 1690 CACTTGGGTAGATTTTCAGCAAGCGCTTGGTGAAGGACATGTGAATAGACAAGGACAGAT 1749
Query 1698 CCGGTTAAGGAAACCTAAACAGTCGATTTATACTTATCCTGCTCCTGATTGTATGTGCCA 1757
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1750 CCGGTTAAGGAAACCAAAACAGTCGATTTATACTTATCCTGCTCCTGATTGTATGTGCCA 1809
Query 1758 TGTTTGATTAGTTA--AAAGTCT-GAT 1781
||||||||||||| ||||||| |||
Sbjct 1810 TGTTTGATTAGTTTTTAAAGTCTTGAT 1836
Score = 84.2 bits (45), Expect = 4e-15
Identities = 47/48 (98%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 1797 GTTTAGCTTTGTGTTCTTGAGGCTTAATAAAAAGAGTATAGTTTGATT 1844
|||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1898 GTTTAGATTTGTGTTCTTGAGGCTTAATAAAAAGAGTATAGTTTGATT 1945
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91264590810
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5