BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496782
Length=2150
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65490.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 3269 0.0
AT5G65480.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 178 2e-43
> AT5G65490.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING:
13 growth stages; CONTAINS InterPro DOMAIN/s: SGT1 (InterPro:IPR010770);
Has 1807 Blast hits to 1807 proteins in 277
species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi -
347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source:
NCBI BLink). | chr5:26177800-26180316 REVERSE LENGTH=2142
Length=2142
Score = 3269 bits (1770), Expect = 0.0
Identities = 2036/2160 (94%), Gaps = 36/2160 (2%)
Strand=Plus/Plus
Query 1 ATGTCGAAGCCttcttcttcagtc-ttcttctctgaaacctcttctcgtctacc-tgacg 58
||||||||||||||||||||| | ||||||||||||||| |||||||||| || ||||
Sbjct 8 ATGTCGAAGCCTTCTTCTTCA-CCTTTCTTCTCTGAAACCACTTCTCGTCT-CCAAGACG 65
Query 59 agaccgttttcttct-ctATATTCCCGGACTCATCTCTCTCCAGCGCCGGATCAGAAACC 117
| || |||||||||| || ||||||| |||||||| | || | | ||
Sbjct 66 AAACAGTTTTCTTCTCCT-TATTCCCTGACTCATC-C-CT-------C---T------CC 106
Query 118 TCCGCCGCTCTTCAGTCACTTCACTTGGAAATCATCGATTTCGTTTCTCCATTTACTTCT 177
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 107 TCCGCCGCTCTTCAGTCACTTCACTTAGAAATCATCGATTTCGTTTCTCCGTTTACTTCT 166
Query 178 CCTTACATATGGCAACACGAGCCTTTCTCTCTATCCATAGCTCTCTCTTCCTCTTGTGCT 237
|||||||||||||| ||||||||||||||||| || || |||||||||||||||||||||
Sbjct 167 CCTTACATATGGCAGCACGAGCCTTTCTCTCTCTCAATCGCTCTCTCTTCCTCTTGTGCT 226
Query 238 TGTACTAATACTGCTATGCCTCATCTTCACGGGAAGCTCAAGTACGGTGACAATCTGGAG 297
||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 227 TGTACCAATACTGCTATACCTCATCTCCACGGGAAGCTCAAGTACGGTGACAATCTCGAA 286
Query 298 GACGAATGGTTCGCTGTGTTCTTGCTTTTTCGAATCTCCGCTGCGTTTCCGTCTAATTCG 357
|||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 287 GACGAATGGTTCGCTGTGTTTTTACTTTTTCGAATCTCCGCCGCGTTTCCGTCTAATTCG 346
Query 358 ATTCGTGTTTGGGACACTGACGGCGAGTTTCTCCTAATCGAAGCTGCTTTTCATCTCCCG 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 347 ATTCGTGTTTGGGACACTGACGGCGAGTTTCTCCTAATCGAAGCTGCTTTTCATCTCCCG 406
Query 418 CGTTGGCTCAATCCGGAGACTAGTCTCAATCGTGTTTTCATTCGCGGCGGAGACCTCCAC 477
|||||||| |||||||||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 407 CGTTGGCTTAATCCGGAGACTAGTCTCAATCGTGTCTTCATTCGCGGTGGTGACCTCCAC 466
Query 478 ATCGTTCCCAGAAGCCGTTTGCCTGATCCTTCTTTAGTTGCGTCTCTGCGGTTTCTAATC 537
|| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 467 ATAGTTCCCAGAAGCCGTTTGCCTGATCCTTCTTTGGTTGCGTCTCTACGGTTTCTAATC 526
Query 538 GAGCGTGGTAACGAATCTCGTGCGTCGGATTCAGTTCAATCCGCGTTGAAGAATCGGATT 597
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 527 GAGCGTGGTAACGAATCTCGTGCGTCGGATTCAGTTCAATCTGCGTTGAAGAATCGGATA 586
Query 598 TCTGAGTATCCCGAAAGAGCGTGGAGGAATATGCATCGTGTTAGGGTTAGGGTTCCGATA 657
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 587 TCTGATTATCCTGAAAGAGCGTGGAGGAATATGCATCGTGTTAGGGTTAGGGTTCCGGTA 646
Query 658 TCAGTAGCTCAAGTGCTTAGGCATGAACCTCTCTTGATTTCGCTTGCAGTAGAAGGGTTT 717
|| |||||||||||| |||||||||||||| ||||||| || ||||| || |||||||||
Sbjct 647 TCGGTAGCTCAAGTGATTAGGCATGAACCTTTCTTGATCTCACTTGCTGTGGAAGGGTTT 706
Query 718 TATGATCGTGATATGGATTCAATGAAATACGCAGCGAAGATGGAGAAGTTTTTGAGTAAA 777
|| |||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||
Sbjct 707 TACGATCGTGATATGGATTCAATGAAACACGCAGCGAAGATGGAGAAGTTTCTGAGCAAA 766
Query 778 GGAAGAGAAGAGAAGCTTGTGCTTGTTCTTGTCAAGATGTCTCGTGCTATGTATGGGCAG 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 GGAAGAGAAGAGAAGCTTGTGCTTGTTCTTGTCAAGATGTCTCGTGCTATGTATGGGCAG 826
Query 838 CTAGTGCAGCAGAAGTTTCAAGCACCAAATTGTTATCCAATGCCTAGTGTCAGTGACAGG 897
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 827 CTAGTGCAGCAGAAGTTTCAAGCACCGAATTGTTATCCAATGCCTAGTGTCAGTGACAGG 886
Query 898 GATGCTTTCTCCGAGGCTGAGCTAGGGATGAAAATAGCTTGTGGCATGGAAATGATGTAT 957
||||||||||| || ||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 887 GATGCTTTCTCTGAAGCTGAGCTAGGGATGAAGATAGCTTGTGGTATGGAAATGATGTAC 946
Query 958 CAGCAGAGGAAGAAGGAAGGAGAAGATGGGAAAGGGATTAGCTGGAGCAAGTATATAGAC 1017
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 947 CAGCAGAGGAAGAAGGAAGGAGAAGATGGGAAAGGGATTAGTTGGAGCAAGTATAAAGAC 1006
Query 1018 AATCTTGAGAAGAATGGTTATTTTGAAGGATTGATTTCTGGTTCGAAGGAGTACAAGAGG 1077
|||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 1007 AATCTTGAGAAGTATGGTTATTTTGAAGGATTGCTTTCTGGTTCGAAGGAGTATAAGAGG 1066
Query 1078 TTGATGGAGAATGCTGAGGAATACTACCAGAAGAGTTCTTCGTTTTCAAGGACAAGAGAC 1137
|||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||
Sbjct 1067 TTGATGGAGAATGCTGAGGAATACCACCAGAAGAGTTCTTCGTTTTCGAGGACTAGAGAC 1126
Query 1138 ATTATGAGTGCACCGGTGAGACGTATTGATGAGATTCTTGCTTTACCTTATTCGGAGGAT 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1127 ATTATGAGTGCACCGGTGAGACGTATTGATGAGATTCTTGCTTTACCTTATTCGGAGGAT 1186
Query 1198 GACTTTAAGGGTCAGGAGGTTCCTGCTTCTGACAATGATTCTTGGCTCTACGATGGTGAA 1257
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1187 GACTTTAAGGGCCAGGAAGTTCCTGCTTCTGACAATGATTCTTGGCTCTACGATGGTGAA 1246
Query 1258 GATGAGCTAAACTCTGTTCTTCAAGAGAGGCAGAAAGAGATGGAGTTTTATAACTcaaag 1317
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1247 GATGAACTAAACTCTGTTCTTCAAGAGAGGCAGAAAGAGATGGAGTTTTATAACTCAAAG 1306
Query 1318 aaggaaagcaaaaagaaaggtaaggagaagcaagaagctggaagctcatctgaagcaaaC 1377
|||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1307 AAGGAACGCAAAAATAAAGGTAAGGAGAAGCAAGAAGCTGGAAGCTCATCTGATGCAAAC 1366
Query 1378 ATGAACAATTTTGATCTCGGTGATATCTCAAAGTCGATGCAGCAATTCATGCACAAGGTA 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1367 ATGAACAATTTTGATCTCGGTGATATCTCAAAGTCGATGCAGCAATTCATGCACAAGGTA 1426
Query 1438 TCAAGCTACAAAGGAGCAGAAGTTCCAGAAAACAGGGATTTCAAAGAAGTGAATCTAGAT 1497
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1427 TCAAGCTACAAAGGAGCAGAAGTTCCAGAAAACAGGGATTTCAAAGAAGTGAGTATAGAT 1486
Query 1498 GTTGACCGTTTCATGAAAGATATTGAGTCAATGCTAGGGAGCCAAGGTCGTGACAAACAA 1557
||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 1487 GTTGATCGTTTCATGAAAGATATTGAGTCAATGCTAGGAAGCCAAGGTCGTGACGAACAA 1546
Query 1558 GCTGATGATGACAGTGATGGCTCTGAAGGATCTTCTATGGACATGGATTTTGATGACTTT 1617
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 1547 GCTGATGATGACAGTGATGGCTCTGAAGGATCTTCCATGGACATGGATTTTGATGACGTT 1606
Query 1618 GAAGATGATAGCGAAGGAGAAGAGTCTAACGAAGATGCTAAGGAAAGCTTTAAGGAATCC 1677
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 1607 GAAGATGATAGCGAAGGAGAAGAATCTAACGAAGATGCTAAGGAAAGCTTTGAGGAATCC 1666
Query 1678 TACTATGGAGCAATGAATGAGGAACTGAAAAACTCAACTCTTGAGAAAAGCTTTGAACAT 1737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1667 TACTATGGAGCAATGAATGAGGAACTGAAAAACTCAACTCTTGAGAAAAGCTTTGAAAAT 1726
Query 1738 GTGAATCAACAACATTCTTCTAAGCAAAAAGAGGAATCATCAAAGACTTCAGATGAGAAG 1797
||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||
Sbjct 1727 GTGAATCAACAACATTCTTCTAAGCAAAACGAGGAATCATCAAAAACTAGAGATGAGAAG 1786
Query 1798 GATGATGATGAATTTACACCAGTTGATGCAGATTTTAACCTTGTTAAAAACCTACTTGAA 1857
|||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1787 GATGATGA-G--TTTACACCAGTTGATGCAGATTTTAACCTTGTTAAGAACCTACTTGAA 1843
Query 1858 TCCTACTCTTCACAAGAAGGACTTCCTGGTCCTGCTTCCAATTTGCTCGGCCTCATGGGT 1917
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1844 TCCTACTCTTCACAACAAGGACTTCCTGGTCCTGCTTCCAATTTGCTCGGCCTCATGGGT 1903
Query 1918 TTGCAGCTTCCCAAGGATTCTAGCGACAAAAACTGAATGCTGT-TCAAAAATGTAGTTTG 1976
||||||||||| || ||||| ||||||||||||||||||| | |||||| |||||||||
Sbjct 1904 TTGCAGCTTCCAAAAGATTCCGGCGACAAAAACTGAATGCT-TATCAAAA-TGTAGTTTG 1961
Query 1977 TTTTTGGGTTCACTTTGTTTAATCACATAATTGTAAGTAACGTTGTTGGGGA-Gtttttt 2035
||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||
Sbjct 1962 TTTTTGGGTTCACTTTGTTTAATCACATAATCGTGAGTAACGTTGTTGGGGAAGTTTTTG 2021
Query 2036 ttttGTCGAAAGTAAGCACATGACATGTGATT-CAAGAAAACAAAATATGTACATGTACA 2094
| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 2022 TGTTGTCGAAAGTAAGCACATGACATGTGATTTCAAGAAAACAACATATGTACATGTACA 2081
Query 2095 ---CTACTATTACACATCATCAAACCACAAAGGAACAAAAGAAAAA-GAttttttttttt 2150
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2082 TTACTACTATTACACATCATCAAACCACAAAGGAACAAAAGAAAAAAGATTTTTTTTTTT 2141
> AT5G65480.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G38060.2);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:26176021-26177917 FORWARD LENGTH=1199
Length=1199
Score = 178 bits (96), Expect = 2e-43
Identities = 111/117 (95%), Gaps = 5/117 (4%)
Strand=Plus/Minus
Query 2039 TGTCGAAAGTAAGCACATGACATGTGA-TTCAAGAAAACAAAATATGTACATGTAC---A 2094
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |
Sbjct 1199 TGTCGAAAGTAAGCACATGACATGTGATTTCAAGAAAACAACATATGTACATGTACATTA 1140
Query 2095 CTACTATTACACATCATCAAACCACAAAGGAACAAAAGAAAAA-GAttttttttttt 2150
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1139 CTACTATTACACATCATCAAACCACAAAGGAACAAAAGAAAAAAGATTTTTTTTTTT 1083
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106625957580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5