BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496783
Length=485
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65495.1 | Symbols: | unknown protein; Has 9 Blast hits to ... 702 0.0
> AT5G65495.1 | Symbols: | unknown protein; Has 9 Blast hits to
9 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr5:26180470-26181069 FORWARD LENGTH=600
Length=600
Score = 702 bits (380), Expect = 0.0
Identities = 454/488 (93%), Gaps = 12/488 (2%)
Strand=Plus/Plus
Query 1 CGAAGAATTGATTTTTGTG-TTCTCTTTCC-TTTACGATGTGTTATGGTCACAATCAATC 58
||||||||||||||||||| || ||||||| |||||||||||||| ||||||||||||||
Sbjct 1 CGAAGAATTGATTTTTGTGTTTATCTTTCCTTTTACGATGTGTTACGGTCACAATCAATC 60
Query 59 GTTTTCGTCGCGAAGCAGCCTCCGTCGCCGATCGCACGACGGAGATGACGATTCAGTGGT 118
||| |||||||||||||| ||||||||||||||||| |||||||| || |||||| ||
Sbjct 61 GTTGTCGTCGCGAAGCAGTCTCCGTCGCCGATCGCATGACGGAGAAGATGATTCA---GT 117
Query 119 GGTAGAAGATCTTCGCGACCGGCTGGCGGAAACCGAGGCGCGGCTGAGACGAGCAAGGGC 178
|||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 118 GGTAGACGATCTTCGAGACCGGCTGGCGGAAACCGAGGCGCGGCTGAGAAGAGCAAGGGC 177
Query 179 GAGAGAAGCTGAGCTAAGCCGGAGGTTGGAGCATATGAAGAGATTCGTTTCGGTGATGGA 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GAGAGAAGCTGAGCTAAGCCGGAGGTTGGAGCATATGAAGAGATTCGTTTCGGTGATGGA 237
Query 239 GATCATTGAGACTTTCTTGGAACGACGATTCCAAGAGCAGAAAGATCGAATTGCTCGCCT 298
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 238 GATCATTGAGACTTTCTTGGAAAGACGATTCCAAGAGCAGAAAGATCGAATTGCTCGCCT 297
Query 299 TTTCTCTCCTGTATCGACTAAATAAAAGGGAAGGcttcttcttcctcttgctttgtttct 358
||||||||||||||| || |||||||| |||||||||||||||| ||| |||||||||
Sbjct 298 TTTCTCTCCTGTATCCACGAAATAAAA---AAGGCTTCTTCTTCCTTTTG-TTTGTTTCT 353
Query 359 tccttttgttgtgggatctttttacttttgactgtcccttgtttgtttgttgtttgATAG 418
|| |||||||||||||||| |||| ||||| |||||||||| ||||||| |||||||||
Sbjct 354 TCTTTTTGTTGTGGGATCTCTTTAGTTTTGGTTGTCCCTTGTCTGTTTGT-GTTTGATAG 412
Query 419 TAGCAAATTTCTAAGAACCATAGATTTTGTTTTGTTGAAGCTTAAGGTAAAAATGAAA-G 477
|||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 413 TAGCTAATTTCGAAGAACCATAGATTTTGTTTTGTTGAAGCTTAAGGTAAAA-TGAAAAG 471
Query 478 CTATGTGC 485
||||||||
Sbjct 472 CTATGTGC 479
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23107707620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5