BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496786
Length=703
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65520.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1099 0.0
> AT5G65520.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:26189725-26190591 REVERSE LENGTH=867
Length=867
Score = 1099 bits (595), Expect = 0.0
Identities = 668/704 (95%), Gaps = 2/704 (0%)
Strand=Plus/Plus
Query 1 GTGACTGGTTTAGTCTTCTGAGATTCAGAGAGAGCaaaaaaa-aaaaaaGACAATGGCTA 59
|||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||
Sbjct 44 GTGACTGGTTTAGTCTTCTGAGATTCAGAGAGAGCAAAAAAAGGAAGAAGAC-ATGGCTA 102
Query 60 CAACAGAAACAATCATACAAGGAGCAATTTTGGTGCTAACCTTGGTTATGTTCTGGGCGA 119
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 103 CAACAGAAACAATCATACAAGGAGCAATTCTGGTGTTAACCTTGGTTATGTTCTGGGCGA 162
Query 120 TTAAGTATCTCTCTCAACGAGGCCTAACCAAATTCCGAACCAAACACCGAGCCACACTCC 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 163 TTAAGTATCTCTCTCAACGAGGCCTAACCAAATTCCGAACCAAACACCGAGCCACACTCC 222
Query 180 AAACCCAGCGTCAGCTAATCCAAGCCTCTCGTCTCCTAGCTCGAGCCCGAACCACACCCA 239
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 223 AAACCCAGCGTCAGCTAATCCAAGCCTCACGTCTCCTAGCTCGAGCCCGAACCACACCCA 282
Query 240 AGAAATCCCAATCTCAATCTCTCGCCAAAACGGCGCTCACCGAAGCTGATAATGTGATCT 299
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 AGAAATCTCAATCTCAATCTCTCGCCAAAACGGCGCTCACCGAAGCTGATAATGTGATCG 342
Query 300 CGATTTCACCAGATGATGCCGCCGGTCACATCGTCCGTGCCCTAGCTCTAGATCTGCTCG 359
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 343 CGATTTCTCCAGATGATGCCGCCGGTCACATCGTCCGTGCCCTAGCTCTAGATCTGCTCG 402
Query 360 GTCACCACACTTCTGCTCTCAAGTCATTCGATATGGCGCTGACTTATCCGCGTTTGAAGT 419
||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 403 GTCACCATACTTCTGCTCTCAAATCGTTCGATATGGCGCTGACTTATCCGCGTTTGAAGT 462
Query 420 CGCTTTCGGTTGGAGAACGTGCCGATGCGCTTGTGAAGAGAGCTGAGATGAAACTGGCTG 479
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 463 CGCTTTCGGTTGGAGAACGAGCCGATGCGCTTGTGAAGAGAGCTGAGATGAAGCTGGCTG 522
Query 480 TGAATCGGCGACGGAGGATTGATTCGGCAATCGAAGATCTGGAAGAGGCGGTGAGGCTCC 539
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 523 TGAATCGGCGACGGAGGATTGATTCGGCGGTCGAGGATCTGGAAGAGGCGGTGAGGCTCG 582
Query 540 CCGCCGGTACAGATACGGCGAGATTATTCCGTCTATTAGGCGAGTGTTATGAGTTCAAGG 599
||||||||||||||||||||||||| ||||| || || || |||||||||||||||||||
Sbjct 583 CCGCCGGTACAGATACGGCGAGATTGTTCCGGCTGTTGGGAGAGTGTTATGAGTTCAAGG 642
Query 600 GCTTGAATGAGAAAGCCCAATGGGCTTTTAATGAAGCTTTAAAAGCCCAACCGAGTTCGG 659
||||||| ||||||||||| ||||| |||||||||||||||||||| ||||| ||||| |
Sbjct 643 GCTTGAAAGAGAAAGCCCAGTGGGCCTTTAATGAAGCTTTAAAAGCTCAACCTAGTTCCG 702
Query 660 CAAACGGGTCGTGATGAATGAGATAGAGCGGACTAGGCCGTGGC 703
|||||| ||||||||||||||| || ||||||||| ||||||
Sbjct 703 TAAACGGCACGTGATGAATGAGATGGACCGGACTAGGTCGTGGC 746
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34058751666
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5