BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496787
Length=1795
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65530.1 | Symbols: | Protein kinase superfamily protein | ... 2586 0.0
> AT5G65530.1 | Symbols: | Protein kinase superfamily protein
| chr5:26190592-26193106 REVERSE LENGTH=1903
Length=1903
Score = 2586 bits (1400), Expect = 0.0
Identities = 1659/1777 (93%), Gaps = 45/1777 (3%)
Strand=Plus/Plus
Query 47 ACACAAAAACACAAAACTTCTGTTCCCCTGTTTCTACGGATTCTCTCCGGCTCTGAGAGC 106
|||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||
Sbjct 84 ACACAAAAACACAAAACTTCTGTTTCCCTGTTTCTCCGGATTCTCTCCGGCTCT--GAGC 141
Query 107 TTTC-GCTTTCTCCTCT-CGGAGATGTTACTCTGCTTCCCTCTTTTGTGTTCTTTTTGTT 164
|||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 TTTCGGC-TTCTCCTCTCCGGAGATGTTACTCTGCTTCCCTCTTTTGTGTTCTTTTTGTT 200
Query 165 TTCTGGGTGAA-ATCTGTATGAAGCTTTGACT--TATATTTAGCGAAGAAGCATCCCAGA 221
||||||||||| || |||||||| |||||||| || ||| |||||||| ||||||||
Sbjct 201 TTCTGGGTGAATAT-TGTATGAACCTTTGACTGGGAT-TTTTCCGAAGAAGAATCCCAGA 258
Query 222 -GTACGTAAATTTTTCTCAAAGCTATGGCTGTTGAAGAGATGGAGAAGAAGATCAAAGGA 280
| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 259 CG-ACGT-AATTTTTCTCCAAGCTATGGCTGTTGAAGAGATGGAGAAGAAGATCAAAGGA 316
Query 281 AGCCATGATACGGAGCTACATAACAACGACTTATCCATCGAAGATCCATCTCCAAGATGC 340
||||| || |||||||||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct 317 AGCCAAGAGACGGAGCTACATAAAAACGACTTATCAATCGAAGACCCATCTCCAAGATGC 376
Query 341 GTGCTTGAAATCCCGGCAATGAGTTCCGATTCCGATAACAGCAGCAGCAGCAGTAGTTGT 400
||||||||||| |||| ||||||||| ||||||||| | | ||||||| ||||||
Sbjct 377 GTGCTTGAAATTCCGGTAATGAGTTCAGATTCCGAT---A--A-CAGCAGC---AGTTGT 427
Query 401 AGCTCGTGTTCTCCTGATAAATCATCGTCGCCATTATCAACAACTCCTACAAACGTTTCG 460
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 428 AGCTCGTGTTCTCCTGATAAATCATCGTCGCCATTATCAACAACTCCTCCAAACGTTTCG 487
Query 461 TCTTTTCATCAATGGAACAAGATGATCGAATCTATCAAGAAGAAATCAATTAGGAGATTC 520
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 488 TCTTTTCATCAATGGAACAAGATGATCGAATCCATCAAGAAGAAATCAATTAGGAGATTC 547
Query 521 TCTGTCATTCCTCTCCTCGCTAGCTACGAGCTCACCCGTAAAAACATGCGGCGGAAACTA 580
|||||||||||||||||||||||||||||||||||||| ||||| | | | |||||||
Sbjct 548 TCTGTCATTCCTCTCCTCGCTAGCTACGAGCTCACCCGCAAAAAGAAACAACCGAAACTA 607
Query 581 TCTCCGTGTTCAGAAAACGAATTCGATTGTGACCAAATCCTCGTCGCTAAACCTTCGTGG 640
||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 608 TCTCCTTGTTCAGAAAACGACTTCGATTGTGATCAAATCCTCGTCGCTAAACCTTCGTGG 667
Query 641 CGCAATTTCACCTTCGACGAGCTCGTTGCCGCCACCGACAATTTTAATCCCGAGAACATG 700
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 668 CGTAATTTCACCTTCGACGAACTCGTTGCCGCCACCGACAATTTTAATCCCGAGAACATG 727
Query 701 ATTGGGAAAGGAGGGCATGCGGAGGTGTACAAAGGTGTTTTACCGGACGGAGAGACTGTG 760
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 728 ATTGGGAAAGGAGGACATGCGGAGGTGTACAAAGGGGTTTTACCGGACGGAGAGACTGTG 787
Query 761 GCGATCAAGAAGCTGACGAGACACGCAAAGGAAGTAGAAGAAAGAGTCAGTGATTTCTTA 820
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 788 GCGATCAAGAAGCTGACGAGACATGCAAAGGAAGTAGAAGAACGAGTCAGTGATTTCTTA 847
Query 821 TCGGAGCTTGGAATAATCGCACACGTTAACCATCCAAACGCAGCTAGGCTTCGTGGTTTC 880
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 848 TCGGAGCTTGGGATAATCGCACATGTTAACCATCCAAACGCAGCTAGGCTTCGTGGTTTC 907
Query 881 AGTTGTGATCGCGGTTTGCATTTTGTGCTTGAGTACTCTCCTCATGGCAGTCTCGCTTCT 940
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 908 AGTTGTGATCGCGGTTTGCATTTTGTGCTTGAGTACTCTTCTCATGGCAGTCTTGCTTCT 967
Query 941 CTACTCTTTGGATCTGAGGAGTGTTTGGATTGGAAGAAACGGTATAAAGTGGCTTTGGGT 1000
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 968 CTACTCTTTGGATCAGAGGAGTGTTTGGATTGGAAGAAACGGTATAAAGTGGCTATGGGT 1027
Query 1001 ATAGCTGATGGTTTGAGTTATCTTCATAATGATTGCCCTCGACGGATTATTCACCGAGAC 1060
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1028 ATAGCTGATGGTTTGAGTTATCTTCATAACGATTGCCCTCGACGGATTATTCACCGAGAC 1087
Query 1061 ATCAAAGCTTCCAACATTTTGCTCAGTCAAGATTACGAAGCTCAGATTTCGGATTTTGGA 1120
|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 1088 ATCAAAGCTTCCAACATTTTGCTCTCTCAAGACTACGAAGCTCAGATTTCGGATTTTGGA 1147
Query 1121 CTAGCTAAGTGGCTACCAGAGAATTGGCCTCATCACATTGTTTTCCCTATCGAAGGCACA 1180
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1148 CTAGCTAAGTGGCTCCCAGAGCATTGGCCTCATCACATTGTTTTCCCTATCGAAGGCACA 1207
Query 1181 TTCGGATATCTAGCTCCAGAGTACTTTATGCATGGGATTGTAGACGAGAAGACGGATGTG 1240
|||||||||||||||||||||||||| ||||| |||||||| || ||||||||||||||
Sbjct 1208 TTCGGATATCTAGCTCCAGAGTACTTCATGCACGGGATTGTCGATGAGAAGACGGATGTT 1267
Query 1241 TTTGCATTTGGTGTATTGCTTCTAGAGATCATAACTGGTCGTCGAGCTGTTGATACCGCT 1300
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1268 TTTGCTTTTGGTGTATTGCTTCTAGAGATCATAACTGGTCGTCGAGCTGTTGATACCGAT 1327
Query 1301 AGCCGGCAAAGCATAGTTATGTGGGCAAAACCTCTTTTGGAGAAAAACAGCGTGGAAGAA 1360
|||||||||||||||||||||||||||||||||||| ||||||| |||| | ||||||||
Sbjct 1328 AGCCGGCAAAGCATAGTTATGTGGGCAAAACCTCTTCTGGAGAAGAACAACATGGAAGAA 1387
Query 1361 ATAGTTGATCCTCAACTAGGAAATGACTTTGATGAGATCGAGATGAAACGAGTGATGCAA 1420
|||||||||||||| ||||| |||||||||||||| | ||||||||||||||||||||||
Sbjct 1388 ATAGTTGATCCTCAGCTAGGCAATGACTTTGATGAAACCGAGATGAAACGAGTGATGCAA 1447
Query 1421 ACAGCTTCAATGTGCATACACCATGTATCCACTATGCGCCCTGATATGAACCGGTTGGTT 1480
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1448 ACAGCTTCAATGTGCATACACCATGTATCCACTATGCGTCCTGACATGAACCGGTTGGTT 1507
Query 1481 CAGCTGTTGCGCGGAGATGACCAGTTAGCAGAACAAAAACCAGGTGGAGCAAGAACAGTG 1540
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1508 CAGCTGTTGCGCGGAGATGACCAGTTAGCTGAACAAAAACCAGGTGGAGCAAGAACAGTG 1567
Query 1541 AGTCTCGACGATTGCGACTTAGATCACACCTCTTCCTCTTACCTTAACGATCTCACTCGA 1600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1568 AGTCTCGACGATTGCGACTTAGATCACACCTCTTCCTCTTACCTTAACGATCTCACTCGA 1627
Query 1601 CATAGACAACTCTTAATGGAGTGAGCAATCTGATGATTCCA-T-C-----------CTCC 1647
|||||||| ||||||||||||| |||||||||||||| ||| | | ||||
Sbjct 1628 CATAGACAGCTCTTAATGGAGTAAGCAATCTGATGATACCAATACTTTAAAAAAAACTCC 1687
Query 1648 -C--ACAGAGAAGAA-A--CAACAAGAAGCAAAAATGtttttcttttcctttttcttgtc 1701
| ||||||||||| | |||||||||||||||||||| |||||| |||||||||||||
Sbjct 1688 TCTCACAGAGAAGAAGAAACAACAAGAAGCAAAAATGTTCTTCTTTCCCTTTTTCTTGTC 1747
Query 1702 tgtgattttgcttcttttgtctCCATTGTAAAAATCTTCAAAAGAGGGAAAATGTTGTAT 1761
|||||||||||||| | | ||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1748 TGTGATTTTGCTTCGTCT-TCTCCATTGTAAAAATCTTAAAAAGAGGGAATATGTTGTAT 1806
Query 1762 GTAT-AATTTGGCTT--GTCTTCAAATTCTGGTTGTC 1795
|||| |||||||||| ||||||||||||||||||||
Sbjct 1807 GTATTAATTTGGCTTTTGTCTTCAAATTCTGGTTGTC 1843
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88804764105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5