BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496788
Length=2021
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65540.1 | Symbols: | unknown protein; Has 6825 Blast hits ... 3199 0.0
> AT5G65540.1 | Symbols: | unknown protein; Has 6825 Blast hits
to 3811 proteins in 289 species: Archae - 0; Bacteria - 184;
Metazoa - 2139; Fungi - 760; Plants - 816; Viruses - 52;
Other Eukaryotes - 2874 (source: NCBI BLink). | chr5:26195689-26198322
FORWARD LENGTH=2049
Length=2049
Score = 3199 bits (1732), Expect = 0.0
Identities = 1927/2023 (95%), Gaps = 6/2023 (0%)
Strand=Plus/Plus
Query 3 AAATCAACAGTGACAATGGCACTGCTCGGCGACGACGGTCGTGGCTTCGATCTAGCGAGA 62
|||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 7 AAATTAAGAGTGACAATGGCACTGCTCGGCGACGACGGTCGTGGCTTCGATCTAGCCAGA 66
Query 63 AGACTCGAACTGTCCGGCGTATGGCGGACATGGCTCGGCGATTCTATCTACTCTTCTTTC 122
| ||| ||| | |||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 67 AAACTTGAAGTTTCCGGCGTGTGGCGGACATGGCTCGGCGATTCTATTTACTCTTCTTTC 126
Query 123 CACCACTACCTTTCTTCTCCTTCTAACTGGGAAGCTTTTATGCGCGTTGATGAATCCAAG 182
||||| || |||||||||||||||| |||||||||||| |||||||||||||| ||||||
Sbjct 127 CACCATTATCTTTCTTCTCCTTCTACCTGGGAAGCTTTCATGCGCGTTGATGAGTCCAAG 186
Query 183 CCTAGGGCTCAGATTCAGCTCCAGCTCCGCGTTCGCGCTCTCTTATTCGATAAAGCCACC 242
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 187 TCTAGGGCTCAGATTCAGCTCCAGCTCCGCGTTCGTGCTCTCTTATTCGATAAAGCCACC 246
Query 243 GTCTCTCTCTTCCTCCGATCCAATACAATCGCCGCTTCATCATCATCCTCTGCTTCCATT 302
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 247 GTCTCTCTTTTCCTTCGATCCAATACAATCGCCGCTTCTTCATCATCCTCTGCTTCCATT 306
Query 303 TCCGATGTTTCTTCCGTCGCGGTGTCCAAGCTCAATCCTAATTATTTACAGCTACATGGA 362
|| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 307 TCTGATGTCTCTTCCGTCGCGGTGTCTAAGCTCAATCCTAATTATTTACAGCTACACGGA 366
Query 363 GATGATGTGTACTACACGTTGGAGAATGCTTCTCTTGAAAGTGGGTTTCAACGAGACGGA 422
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 367 GATGATGTGTACTACACGTTGGAGAATGCTTCTCTTGAAAGTGGGTTTCAGCGAGAGGGA 426
Query 423 GGGATTCGCCACAATCAGAGCTTAACCAAGAGCCTATCAAAGCCAAGTTTTACCTCTGGG 482
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 427 GGGATTCGCCACAATCCGAGCTTAACCAAGAGCCTATCGAAGCCAAGTTTTACCTCTGGG 486
Query 483 ACGAGAGGTAGTGAGTCTGATTTTAGTAATCTTTCTCAAAGGTCGAGGTTTGAGGAGTTA 542
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 ACAAGAGGTAGTGAGTCTGATTTTAGTAATCTTTCTCAAAGGTCGAGGTTTGAGGAGTTA 546
Query 543 CCGGACACTTGGTACACTCAGTTTATTTCAAGGTATGGTTTTAAGTATGGAATGTCGGTT 602
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 547 CCAGACACTTGGTACACTCAGTTTATTTCAAGGTATGGTTTTAAGTATGGAATGTCTGTT 606
Query 603 GGAGGACAAGAATCTGATAAACGCACACCTGAAGGAATGTCTACTTACCTTAGAGTTGTG 662
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 607 GGAGGACAAGAATCTGATAAACGCACACCTGAAGGGATGTCTACTTACCTTAGAGTTGTA 666
Query 663 GATACTCATAAGAGAAAGCGTGCACCTTTTTTAGAAGATCGAAGTTTAGCTCATATGAGT 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GATACTCATAAGAGAAAGCGTGCACCTTTTTTAGAAGATCGAAGTTTAGCTCATATGAGT 726
Query 723 AGATCTAGTACACATCCAAGTTCTGGCTTTGATGGACGTAGTTCAGAAGATGATATACTT 782
||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||
Sbjct 727 AGATCTAGTACACATCCTAGTTCTGGCTTTGATGGAAGTACTTCAGAAGATGATATACTT 786
Query 783 TTTCTTCCGGAGACAATGTTTAGAATGAACTGTGTACCTGAGACTGCCCTTTCGCCGGTT 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 787 TTTCTTCCGGAGACAATGTTTAGAATGAACTGTGTACCTGAGACTGCCCTTTCGCCGATT 846
Query 843 ACTAGAACACAAGACAACTTAAAAACAGAGTTCTATGGGGTACTTGATACTTTACCACAA 902
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 847 ACCAGAACACAAGACAACTTAAAAACAGAATTCTATGGGGTACTTGATACTTTACCGCAA 906
Query 903 GTTACTACCAGGAGTCATATCATGATCGAGAGGCTTGGGATGATGCCTGAGTACCATAGG 962
|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 907 GTTACTACCAGGAGTCATATTATGATCGAGAGGCTTGGGCTGATGCCTGAGTACCATAGA 966
Query 963 ATGGAAGATAGAGGACTTTTACGCCGTAGAAAAGCTGAAAAATTGGGTTTTAGTGACGAT 1022
|||||||| |||||| |||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 967 ATGGAAGAAAGAGGAGTTTTACGCAGTAGAAAAGCTGAAAAAATGGGTTTTAGTGACGAT 1026
Query 1023 CAAGCAGCTCTGGTGTCACGGAAAGTTGTTGCACGCATGCTTCTGACGATGGGATTTGAA 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 CAAGCAGCTCTGGTGTCACGGAAAGTTGTTGCACGCATGCTTCTGACGATGGGATTTGAA 1086
Query 1083 GGTGCAACAGAGGTTCCGATTGATGTCTTCTCTCAGTTGGTTAGCCGACATATGAGTAAA 1142
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1087 GGTGCCACAGAGGTTCCGATTGATGTCTTCTCTCAGTTGGTTAGCCGACATATGAGTAAA 1146
Query 1143 TTAGGCCATATTTTGAAGCTTCTCAGTGACAGTTACAAAAAGGAGTGTTCAGCAATGCAG 1202
||||||| ||||||||||||||| | |||||| |||||||| ||||||||||||||||||
Sbjct 1147 TTAGGCCGTATTTTGAAGCTTCTTACTGACAGCTACAAAAAAGAGTGTTCAGCAATGCAG 1206
Query 1203 TTGATCAAGATGTTCCTTAATACTACAGGATATAGTAATCTTGGGAGTTTAGCAGAGCTT 1262
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 1207 TTGATTAAGATGTTCCTTAATACTACGGGATATAGTAATCTTGGGAGTTTAGCAGAGATT 1266
Query 1263 GTTAAGGATGGTACGAGGAATCATCCTCCCCCAAATCAGAAACAACCACAAGTGCTTCAG 1322
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1267 GTTAAGGATGGTACTAGGAATCATCCTCCCCCAAATCAGAAACAACCACAAGTGCTTCAG 1326
Query 1323 CAACAGTTACATCTACAGCAACCAGCTTCTCTCCGGTTACCGCAACAAATTCAGAGGCAA 1382
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1327 CAACAGTTACATCTGCAGCAACAAGCTTCTCTCCGGTTACCGCAACAAATTCAGAGGCAA 1386
Query 1383 ATGCATCCACAGATGCAGCAAATGGTTAATCCCCAAAACTTTCAGCAGCAGCAACAGCTA 1442
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1387 ATGCATCCACAGATGCAGCAAATGGTTAATCCCCAAAATTTTCAGCAGCAGCAACAGCTA 1446
Query 1443 GAAAGAATGCGTAGACGTCCAGTTACATCACCGCGACCCAACATGGATATGGAAAATGAT 1502
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1447 GAAAGAATGCGTAGGCGTCCAGTTACATCACCGCGACCCAACATGGATATGGAAAAGGAT 1506
Query 1503 CGGCCGCTGGTTCAGGTAAAGCTAGAGAATCCTTCTGATATGGCAGTAGATGGAAATGCC 1562
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1507 CGGCCGCTGGTTCAGGTAAAGCTAGAGAATCCTTCTGAAATGGCAGTAGATGGAAATGCC 1566
Query 1563 TTCAACCCTATGAACCCAAGACACCAGCAACAGATGCAGCAGCAACTCAGACAGCAACAG 1622
|| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1567 TTTAACCCTATGAACCCAAGACACCAGCAACAGCTACAGCAGCAACTCAGACAGCAACAA 1626
Query 1623 -A--TTGCTGCCATGTCGAATATGCAACAACAGCCGGGCTATAGCCAATTCAGGCAATTG 1679
| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1627 CAAATTGCTGCCATGTCGAATATGCAACAACAGCCGGGCTATAACCAATTCAGACAATTG 1686
Query 1680 GCTTCAATGCAAATTCCACAAATGCAAACACCTACACCAGGCA-TGGTCAGGGCTCAACC 1738
|||||||||||||||||||| ||||||||||| |||| ||| | || |||||||||||||
Sbjct 1687 GCTTCAATGCAAATTCCACAGATGCAAACACCCACACTAGGAACTG-TCAGGGCTCAACC 1745
Query 1739 CGTTAAGGTTGAAGGATTCGAACAACTAATGGGAGGGGATTCTTCTCTTAAACATGAGTC 1798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1746 CGTTAAGGTTGAAGGATTCGAACAACTAATGGGAGGGGATTCTTCTCTTAAACATGACTC 1805
Query 1799 GGATGATAAGCTGAGATCTCCACCTACCAAATAATATTTTGTACATAGACAAACTACCCT 1858
||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||
Sbjct 1806 GGATGATAAGCTGAGATCTCCACCTACCAAATAGCATTATGTACAGAGACAAACTACCCT 1865
Query 1859 GACCAAGGTACTTATTTGTGTTGCACGTGTACACAAAGCCCTGTTAGTTCAACATTTTGG 1918
|||||||||||||||||||||||||| ||||||||||| |||||||||| ||| ||||||
Sbjct 1866 GACCAAGGTACTTATTTGTGTTGCACTTGTACACAAAGTCCTGTTAGTTTAACTTTTTGG 1925
Query 1919 GTCAATGTATTTATCTGATATTTCATCTAAGTTTAATTATCATCATGTGCAAAAGGGAGA 1978
|||||| ||||||||||||||| ||||| ||||| ||||| ||||||| ||||| ||||
Sbjct 1926 GTCAATATATTTATCTGATATT-CATCTGTGTTTAGTTATCCTCATGTGTAAAAGAGAGA 1984
Query 1979 GTCGGATTATAGGTTGACATCTTTTGGAATCACCAAGTTTTTG 2021
|||||||||||||||||||||| |||||||||||||||||||
Sbjct 1985 ATCGGATTATAGGTTGACATCTTGTGGAATCACCAAGTTTTTG 2027
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100150087275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5