BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496790
Length=2163
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65570.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 3430 0.0
> AT5G65570.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:26203968-26206184 FORWARD LENGTH=2217
Length=2217
Score = 3430 bits (1857), Expect = 0.0
Identities = 2066/2168 (95%), Gaps = 10/2168 (0%)
Strand=Plus/Plus
Query 1 ATGAGAAGAGATTATAACGGCGGATTGATCGCCTTTTCGAGATATCTCAGCTTCTTTGCA 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 55 ATGAGAAGAGATTATAACGGCGGATTGATCGCCTTTTCGAGATATTTCAGCTTCTTTTCT 114
Query 61 ACCAAAACTTGTTCACCGGAACT-ATCTATCAATAGCCAGTTTAGGCTTCTCTGCGTCAC 119
| || ||| |||||||||||| | ||||||||||| ||||||||||||||||||| ||||
Sbjct 115 AGCAGAACATGTTCACCGGAA-TCATCTATCAATAACCAGTTTAGGCTTCTCTGCATCAC 173
Query 120 TTGTGACT-CCTTGACAACGACGCACACTTTCTCTCAGCTTCTCAGACAATGCATAGACG 178
|||||| | || ||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 174 TTGTGA-TACCCTGACAACGACGCACAATTTCTCTCAGCTTCTCAGACAATGCATCGACG 232
Query 179 AAAAATCGATATCAGGAATCAAGAATATCCAAGCCCAGATGCTCAAATCAGGTTTTCCAG 238
||| |||||||||||||||||||| |||||||||||| ||||| ||||| |||||||| |
Sbjct 233 AAAGATCGATATCAGGAATCAAGACTATCCAAGCCCATATGCTGAAATCTGGTTTTCCGG 292
Query 239 TCGAACTTTCCGGCAGTAAACTCGTCGACGCGAGTTTGAAA-TGTGGCGAGATCGGTTAC 297
|||| |||||||||| |||||||||||||||||||| ||| |||||||| |||| ||||
Sbjct 293 CCGAAATTTCCGGCAGCAAACTCGTCGACGCGAGTTT-AAAGTGTGGCGATATCGATTAC 351
Query 298 GCACGCCAGCTGTTCGATGGAATGCCTGAGAGACATATTGTAACATGGAACTCTATT-AT 356
||||| ||| |||||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 352 GCACGACAGGTGTTCGATGGAATGTCTGAGAGACATATTGTAACATGGAACTCT-TTAAT 410
Query 357 TGCTTATTTCATTAAGCACAGAAGAAGCAAGGAAGCTGTTGAGATGTATAGATTGATGAT 416
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 TGCTTATTTAATTAAGCACAGAAGAAGCAAGGAAGCTGTTGAGATGTATAGATTGATGAT 470
Query 417 CT-CGAATAATGTTTTGCCAGATGAGTACACGTTGTCTAGTGTTTTCAAGGCGTTTTCAG 475
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 -TACGAATAATGTTTTGCCAGATGAGTACACGTTGTCTAGTGTTTTCAAGGCGTTTTCAG 529
Query 476 ATTTGAGTCTTGAGAAGGAAGCACAGAGAAGCCACGGACTTGCTGTGATTTTGGGTTTGG 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 ATTTGAGTCTTGAGAAGGAAGCACAGAGAAGCCACGGACTTGCTGTGATTTTGGGTTTGG 589
Query 536 AAGTCTCGAACGTGTTTGTGGGAAGTGCCCTTGTGGATATGTATGTAAAGTTTGGTAAAA 595
||||||| |||||||| || |||||||| |||||||||||||||||||||||||||||||
Sbjct 590 AAGTCTCAAACGTGTTCGTTGGAAGTGCTCTTGTGGATATGTATGTAAAGTTTGGTAAAA 649
Query 596 CGAGGGAGGCAAAGTTAGTTTTGGACCGCGTGGAGGAGAAAGATGTAGTTTTGATCACAG 655
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 650 CGAGGGAGGCGAAGTTAGTATTGGACCGCGTGGAGGAGAAAGATGTAGTTTTGATCACAG 709
Query 656 CTTTGATTGTTGGTTACTCGCAGAAGGGTGAAGATACTGAAGCTGTGAAGGCATTTCAAA 715
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 CTTTGATCGTTGGTTACTCGCAGAAGGGTGAAGATACTGAAGCTGTGAAGGCATTTCAAA 769
Query 716 GTATGTTGGTTGAGAAAGTTCAGCCTAACGAGTATACTTACGCTAGTGTATTGATATCTT 775
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 770 GTATGTTGGTGGAGAAAGTTCAGCCTAATGAGTATACTTACGCTAGTGTATTGATTTCTT 829
Query 776 GTGGAAACTTAAAGGATATAGGTAATGGCAAGTTGATTCATGGACTTATGGTCAAATCCG 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 830 GTGGAAACTTAAAGGATATAGGTAATGGCAAGTTGATTCATGGACTTATGGTCAAGTCCG 889
Query 836 GTTTTGAGTCTGCTCTTGCTTCGCAAACTTCTCTTCTTACAATGTACTTGAGGTGCAGCT 895
||||||||||||| |||||||| ||||||||||||||||| ||||| ||||||||||| |
Sbjct 890 GTTTTGAGTCTGCGCTTGCTTCACAAACTTCTCTTCTTACCATGTATTTGAGGTGCAGTT 949
Query 896 TAGTCGATGATTCCCTACTGGTTTTTAAGTGTATTAAGTACCCAAATCAGGTAACTTGGA 955
| |||||||||||| | | |||||| ||||||||| |||||||||||||||| | |||||
Sbjct 950 TGGTCGATGATTCCTTGCGGGTTTTCAAGTGTATTGAGTACCCAAATCAGGTGAGTTGGA 1009
Query 956 CGTCTCTCATATCAGGGCTTGTACAAAACGGTAGAGAAGAGACGGCTCTAATCGAATTTA 1015
||||||| |||||||||||||| ||||| ||||||||||||| |||||||||||||||||
Sbjct 1010 CGTCTCTTATATCAGGGCTTGTCCAAAATGGTAGAGAAGAGATGGCTCTAATCGAATTTA 1069
Query 1016 GAAAAATGATGCGAGATTCAGTCAAGCCCAACTCTTTTACATTGTCAAGTGCTCTCAGGG 1075
||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 1070 GAAAAATGATGCGTGATTCAATCAAGCCTAACTCTTTTACATTGTCAAGTGCTCTCAGGG 1129
Query 1076 GGTGTTCGAATCTCGCAATGTTTGAAGAAGGCAGACAGGTTCATGGTATCGTGAGTAAAT 1135
|||| |||||||||||||||||||||||||| |||||| |||||||||| |||| |||||
Sbjct 1130 GGTGCTCGAATCTCGCAATGTTTGAAGAAGGTAGACAGATTCATGGTATAGTGACTAAAT 1189
Query 1136 ATGGTTTTGATAGAGATAAGTATGCCGGATCAGGGCTCATTGATTTATATGGGAAATGTG 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 ATGGTTTTGATAGAGATAAGTATGCCGGATCAGGGCTCATTGATTTATATGGGAAATGTG 1249
Query 1196 GATGCTCAGACATGGCAAGGTTGGTTTTTGATACCTTGAGTGAAGTTGATGTTATATCTT 1255
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1250 GATGCTCAGACATGGCAAGATTGGTTTTTGATACCTTGAGTGAAGTTGATGTTATATCTT 1309
Query 1256 TGAACACAATGATATATAGTTATGCACAGAACGGTTTTGGACGCGAAGCACTTGAGTTGT 1315
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1310 TGAACACAATGATATACAGTTATGCACAGAACGGTTTTGGACGCGAAGCACTTGACTTGT 1369
Query 1316 TTGAGAGAATGATAAATCTTGGACTGCAGCCGAACGATGTAACAGTCTTGAGCGTACTCT 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1370 TTGAGAGAATGATAAATCTTGGACTGCAGCCGAACGATGTAACAGTCTTGAGCGTACTCT 1429
Query 1376 TGGCTTGTAATAACTCTGGATTAGTTGAGGAAGGTTGCGAACTCTTTGAGTCCTTTAGAA 1435
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1430 TGGCTTGTAATAACTCTAGATTAGTTGAGGAAGGTTGCGAACTCTTTGACTCCTTTAGAA 1489
Query 1436 AGGATAATATCATGTTAACGAATGATCATTATGCTTGTATGGTAGATATGCTTGGACGGG 1495
||||||| ||||||||||| ||||||||||| || |||||||||||| ||||||||||||
Sbjct 1490 AGGATAAGATCATGTTAACAAATGATCATTACGCGTGTATGGTAGATTTGCTTGGACGGG 1549
Query 1496 CAGGGAGATTAGAGGAAGCGGAAATGCTTATAACCGAGGTAACAAATCCGGATTTGGTTC 1555
|||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||
Sbjct 1550 CAGGGAGATTAGAGGAAGCGGAAATGCTTACAACCGAGGTAATAAACCCGGATTTGGTTC 1609
Query 1556 TGTGGAGGACGCTGCTTAGTGCTTGTAAGGTTCATAGAAAGGTAGAAATGGCAGAGCGGA 1615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1610 TGTGGAGGACGCTGCTTAGTGCTTGTAAGGTTCATAGAAAGGTAGAAATGGCAGAGCGGA 1669
Query 1616 TAACGAGAAAAATCCTAGAGATAGCACCTGGAGATGAAGGAACTCTCATTCTAATGTCAA 1675
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 1670 TAACGAGAAAAATCCTAGAGATAGAACCTGGGGATGAAGGAACTCTCATTCTAATGTCAA 1729
Query 1676 ATCTCTACGCATCCACTGGGAAATGGAACAGGGTGATTGAGATGAAGAGCAAAATGAAGG 1735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1730 ATCTCTACGCATCCACTGGGAAATGGAACAGGGTGATTGAGATGAAGAGCAAAATGAAGG 1789
Query 1736 AGATGAAACTAAAGAAGAATCCAGCAATGAGTTGGGTTGAAATCGATAAAGAGACGCATA 1795
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1790 ATATGAAACTAAAGAAGAATCCAGCAATGAGTTGGGTTGAAATCAATAAAGAGACGCATA 1849
Query 1796 CATTCATGGCTGGAGATTTGTTTTCGCATCCAAACTCTGAGCAGATTCTTGAAAATCTCG 1855
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1850 CATTCATGGCTGGAGATTTGTTTTCGCATCCCAACTCTGAGCAGATTCTTGAAAATCTCG 1909
Query 1856 AAGAGCTGATTAAGAAGGCTAAAGATTTGGGATATGTTGAAGACAAAAGCTGTGTGTTTC 1915
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1910 AAGAGCTGATTAAGAAGTCTAAAGATTTGGGATATGTAGAAGACAAAAGCTGTGTGTTTC 1969
Query 1916 AAGACATGGAGGAGACTGCAAAAGAGAGATCTCTGCATCAACATAGCGAAAAACTCGCCA 1975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1970 AAGACATGGAGGAGACTGCAAAAGAGAGATCTCTGCATCAACATAGCGAAAAACTCGCCA 2029
Query 1976 TAGCTTTTGCGGTTTGGAGAAACGTTGGTGGAAGTATAAGGATTCTAAAGAACCTTAGAG 2035
||||||| || || |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2030 TAGCTTTCGCAGTGTGGAGAAATGTTGGTGGAAGTATAAGGATTCTAAAGAACCTTAGAG 2089
Query 2036 TTTGTGTCGATTGTCACAGTTGGATCAAGATCGTATCAAGAATTATAAAGAGAGAAATTA 2095
||||||| |||||||||||||||||||||||||| |||||| |||| |||||||||||||
Sbjct 2090 TTTGTGTTGATTGTCACAGTTGGATCAAGATCGTGTCAAGAGTTATGAAGAGAGAAATTA 2149
Query 2096 TCTGTAGAGATTCAAAGAGGTTTCATCATTTCAGAGATGGGTCTTGTTCGTGTGGGGATT 2155
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2150 TATGTAGAGATTCAAAAAGGTTTCATCATTTCAGAGATGGGTCTTGTTCGTGTGGGGATT 2209
Query 2156 ATTGGTAA 2163
||||||||
Sbjct 2210 ATTGGTAA 2217
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107278564665
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5