BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496791
Length=1370
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65590.1 | Symbols: | Dof-type zinc finger DNA-binding fami... 2061 0.0
AT3G52440.1 | Symbols: | Dof-type zinc finger DNA-binding fami... 84.2 3e-15
> AT5G65590.1 | Symbols: | Dof-type zinc finger DNA-binding family
protein | chr5:26211746-26213136 REVERSE LENGTH=1391
Length=1391
Score = 2061 bits (1116), Expect = 0.0
Identities = 1309/1397 (94%), Gaps = 33/1397 (2%)
Strand=Plus/Plus
Query 1 CTCTCCTCTCCTACTTTACTTATTTCCTATTCAAAGCAAGAAATCGAAAAAGGACCTCAA 60
||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||
Sbjct 1 CTCTCCTCTCCTACTTTACTTATTT-C-ATTCAAAGCAAGAAATCGAAAAAGGACCCCAA 58
Query 61 ACtttttttCTATCCTTCATTTTTCTCTCCTCCCATCATCATCACCATGTCCTCCCATAC 120
|| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 59 AC-TTTTTTCT-TCCTTCATCTTTCTCTCCTCCCATCATCATCACCATGTCCTCCCATAC 116
Query 121 CAATCTCCCCTCTCCCAAACCAGTTCCTAAACCGGATCACCGTATCTCCGGTACATCCCA 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 117 CAATCTCCCCTCTCCCAAACCAGTTCCTAAACCAGATCACCGTATCTCCGGTACATCCCA 176
Query 181 AACCAAGAAACCACCGTCTTCCTCCGTCGCTCAAGACCAACAAAACCTAAAATGCCCTCG 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 177 AACCAAGAAACCACCGTCTTCCTCCGTAGCTCAAGACCAACAAAACCTAAAATGCCCTCG 236
Query 241 CTGCAACTCTCCAAACACAAAGTTCTGTTACTACAACAACTACAGTCTCTCTCAGCCTCG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 237 TTGCAACTCTCCAAACACAAAGTTCTGTTACTACAACAACTACAGTCTCTCTCAACCTCG 296
Query 301 TCACTTCTGCAAATCTTGTCGCCGTTACTGGACACGTGGCGGCGCTTTAAGAAACGTTCC 360
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||
Sbjct 297 TCACTTCTGCAAATCTTGTCGCCGTTACTGGACACGTGGCGGTGCTCTAAGAAACGTCCC 356
Query 361 CATCGGTGGTGGTTGCCGGAAAACCAAAAAATCCATCAAACCTAACTCCTCCCTGAACAC 420
||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||
Sbjct 357 CATCGGTGGTGGTTGCCGGAAAACCAAAAAATCTATCAAACCTAATTCCTCCATGAACAC 416
Query 421 ActtccttcgtcttcttcttctcagaggttcttctcttcAATCATGGAAGATTCATCCAA 480
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 417 ACTTCCTTCGTCTTCTTCCTCTCAGAGGTTCTTCTCATCAATCATGGAAGATTCATCCAA 476
Query 481 ATTCTTCCCTCCTCCGACAACAATGGATTTTCAGCTCGCTGGCTTATCTCTCAACAAAAT 540
|||||||||||||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct 477 ATTCTTCCCTCCTCCGACAACAATGGATTTTCAGCTGGCCGGATTATCTCTCAACAAAAT 536
Query 541 GAACGATCTTCAACTTTTGAATAACCAAGAAGTTCTTGATCTTAGGCCCATGATCTCCTC 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 537 GAACGATCTTCAACTTTTGAATAACCAAGAAGTTCTTGATCTTAGGCCCATGATGTCCTC 596
Query 601 GGGTCGAGAAAACACACCCGTTGATGTCGGGTCGGGTTTATCCTTAATGGGTTTCGGAGA 660
||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 597 GGGCCGAGAAAACACACCCGTTGATGTCGGGTCGGGTTTATCCCTAATGGGTTTTGGAGA 656
Query 661 TTACAACAACAACCATTCACCGACGGCTTTCACAACCGCCGGAGCAAGCGACGGGAACTT 720
|| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 657 TTTCAACAACAACCATTCACCGACGGGGTTCACAACCGCCGGAGCAAGCGACGGAAACTT 716
Query 721 AGCTTCTTCCATAGAGACTTTGAGTTGTTTAAACCAAGATTTACACTGGAGGCTTCAGCA 780
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 AGCTTCTTCTATAGAGACTTTGAGTTGTTTAAACCAAGATTTACACTGGAGGCTTCAGCA 776
Query 781 ACAGAGGATGGCGATGCTTTTTGGTAATTCTAAGGAAGAAACTGTTGTTGTGGAGAGGCC 840
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 777 ACAGAGGATGGCGATGCTTTTTGGTAATTCTAAGGAAGAAACTGTTGTCGTCGAGAGGCC 836
Query 841 ACAACCTATTCTTTATCGGAATCTTGAGATCGTGAACTCATCATCGCCGTCGTCTCCGAC 900
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 837 ACAACCTATTCTTTATCGGAATCTTGAGATCGTAAACTCATCATCGCCGTCGTCGCCGAC 896
Query 901 GAAGAAAGGAGATAATCAGACAGAGTGGTATTTTGGTAATAATAGTGATAATGAAGGAGT 960
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 897 GAAGAAAGGAGATAATCAGACAGAGTGGTATTTTGGTAATAACAGTGATAATGAAGGAGT 956
Query 961 GATTAGTAATAATGCTAATACAGGAGGAGGA--A-GTGAATGGAACAATGGAATTCAAGC 1017
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 957 GATTAGTAATAATGCTAATACAGGAGGAGGAGGAAGTGAATGGAACAATGGAATTCAAGC 1016
Query 1018 TTGGGCTGATCTTAATCATTATAATGCTTTGCCTTGATTCTTGGTAAGTTTAAGAAACTA 1077
|||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 1017 TTGGACTGATCTTAATCATTATAATGCATTGCCTTGAATCTTGGTAAGTTTAAGAAACTA 1076
Query 1078 TATAATCTATAATTT--TATA-T--AT--G-T--GT-T-GTGATGTAATGCCAAAACTAT 1125
||||||||||||||| |||| | || | | || | |||||||||||||||||||||
Sbjct 1077 TATAATCTATAATTTCATATAATCTATTTGCTATGTGTTGTGATGTAATGCCAAAACTAT 1136
Query 1126 TTATGTTTGTAGttttttctttttGGGGTGTTCTTTTCGTTGTCGTTGTTGGTT--TA-- 1181
|||||||||||||||||| ||||| || ||||||| |||||||||||||||| ||
Sbjct 1137 TTATGTTTGTAGTTTTTTTTTTTTTTTGTATTCTTTTTGTTGTCGTTGTTGGTTACTATT 1196
Query 1182 ---GTACTTTAAGTTTCAATTTGTAAACaaaaaaaCAAAATTGGGGGAGATATTCAAGAA 1238
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 CTAGTATTTTAAGTTTCAATTTGTAAACAAAAAAACAAAATTGGGGGAGATATTCAAGAA 1256
Query 1239 TGGAGAGAGATACTTACATAATATATTC-T-ATATATTTGTGATTTGTCT--AA-GTTGG 1293
||||||||||||||||||| ||||| | | || | | ||| ||| | | || | |||
Sbjct 1257 TGGAGAGAGATACTTACATTATATACTGGTGATTTGTCTGT-ATT-GAATTGAAAGGTGG 1314
Query 1294 AACAGAATTTACTGTGTTTAATTATTGAAAAGCTCTTGGTTTGATGGTGAAATGTTCACT 1353
||||||| ||||||||||||||||| | ||||||||||||||| || |||||||||||||
Sbjct 1315 AACAGAACTTACTGTGTTTAATTATCGGAAAGCTCTTGGTTTGGTGATGAAATGTTCACT 1374
Query 1354 TAATGACTTATTGGATG 1370
|||||||||||||||||
Sbjct 1375 TAATGACTTATTGGATG 1391
> AT3G52440.1 | Symbols: | Dof-type zinc finger DNA-binding family
protein | chr3:19435447-19436190 FORWARD LENGTH=744
Length=744
Score = 84.2 bits (45), Expect = 3e-15
Identities = 56/61 (92%), Gaps = 2/61 (3%)
Strand=Plus/Plus
Query 254 AACACAAAGTTCTGTTACTACAACAACTACAGTCTCTCTCAGCCTCG-TCACTTCTGCAA 312
||||||||||||||||||||||||||||| || ||| |||||||||| | ||||||||||
Sbjct 100 AACACAAAGTTCTGTTACTACAACAACTATAGCCTCACTCAGCCTCGCT-ACTTCTGCAA 158
Query 313 A 313
|
Sbjct 159 A 159
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67469532480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5