BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496795
Length=1266
Score E
Sequences producing significant alignments: (Bits) Value
AT5G65640.1 | Symbols: bHLH093 | beta HLH protein 93 | chr5:262... 1921 0.0
> AT5G65640.1 | Symbols: bHLH093 | beta HLH protein 93 | chr5:26237055-26239084
FORWARD LENGTH=1318
Length=1318
Score = 1921 bits (1040), Expect = 0.0
Identities = 1205/1281 (94%), Gaps = 26/1281 (2%)
Strand=Plus/Plus
Query 2 CACAAACTCACACACACTCTCTGtttttttCTTCCATTCTATTACCAGAAAACAGAGTTC 61
|||| || ||||||||| ||||||||| ||| |||||||||||||||||||||||||||
Sbjct 8 CACACACACACACACACACTCTGTTTTCTTCGTCCATTCTATTACCAGAAAACAGAGTTT 67
Query 62 CAGAGAGAGaaaaaaaTGGAACTGTCGACTCAAATGAATGTGTTCGAAGAGCTTCTTGTT 121
| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 68 GATAGAGAGAAAAGAATGGAACTGTCGACTCAAATGAATGTGTTCGAAGAGCTTCTTGTT 127
Query 122 CCGACAAAGCAAGAAACCACCG---ACAACATCAACAACCTGAGCTTTAATGGCGGATTT 178
||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||
Sbjct 128 CCGACAAAGCAAGAAACAACCGACAACAACATCAACAATCTGAGCTTTAATGGCGGATTT 187
Query 179 G---------ATCATCAATTCTTCCCAAATGCATATAATATTGATTACCTCTGTTTCAAC 229
| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 188 GATCATCATCATCATCAATTCTTCCCAAATGGATATAATATTGATTACCTCTGTTTCAAC 247
Query 230 AATGAAGAAGAAGACGAAAATACCCTTCTT-TATCCTTCTTCTTTCATGGATCTAATCTC 288
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 248 AATGAAGAAGAAGACGAAAATACCCTT-TTGTATCCTTCTTCTTTCATGGATCTAATCTC 306
Query 289 TCAACCTCCTCCATTGCTTCTTCACCAACCACCACCGTTACAACCACTGTCGCCGCCGTT 348
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 307 TCAACCTCCTCCATTGCTTCTTCACCAACCGCCACCGTTACAACCACTGTCGCCGCCGTT 366
Query 349 ATCCTCCTCCGCTACCGCCGCCGCAGCATCATTTGATTACCCTTTTCTTGAGGCTTTACA 408
|||||||||||| ||||||| | |||| ||||||| |||||||||||||||||||| ||
Sbjct 367 ATCCTCCTCCGCGACCGCCG--G-AGCAACATTTGACTACCCTTTTCTTGAGGCTTTGCA 423
Query 409 AGAGATAATTGACTCTTCTTCCTCTTCACCTCCATTGATCCTTCAAAATGGTCAAGAAGA 468
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 424 AGAGATAATTGACTCTTCTTCCTCATCGCCTCCATTGATCCTTCAAAATGGTCAAGAAGA 483
Query 469 GAACTTTAACAATCCGACGTCGTATCCATCTCCATTGATGGAGTCTGATCAGAGCAAGAG 528
||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 484 GAACTTTAATAATCCGATGTCGTATCCCTCTCCATTGATGGAGTCTGATCAGAGCAAGAG 543
Query 529 CTTCAGTGTTGGTTACTGTGGAGGGGAGACGAACAAGAAGAAGAATAAAAAACTCGAAGG 588
|||||||||||||||||||||||| ||||||||||||||||||| ||||| || |||||
Sbjct 544 CTTCAGTGTTGGTTACTGTGGAGGAGAGACGAACAAGAAGAAGAGCAAAAAGCTTGAAGG 603
Query 589 CCAACCTTCTAAGAATCTCATGGCGGAGAGACGACGGAGAAAACGACTTAACGATCGTCT 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 CCAACCTTCTAAGAATCTCATGGCGGAGAGACGACGGAGAAAACGACTTAACGATCGTCT 663
Query 649 TTCAATGCTCCGATCCATCGTCCCAAAAATCAGCAAGATGGACAGGACATCGATATTAGG 708
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 664 TTCTATGCTCCGATCCATCGTCCCAAAAATCAGTAAGATGGACAGGACATCGATATTAGG 723
Query 709 AGATGCCATAGAATACATGAAAGAGCTTTTAGACAAAATCAACAAATTACAAGATGAGGA 768
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 AGATGCCATAGATTACATGAAAGAGCTTTTAGACAAAATCAACAAATTACAAGATGAGGA 783
Query 769 ACGAGAACTTGGAAATAGCAACAATTCACATCACTCTAAGCTCTTCGGTGATCTCAAGGA 828
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 ACAAGAACTTGGAAATAGCAACAATTCACATCACTCTAAGCTCTTCGGTGATCTCAAGGA 843
Query 829 TCTTAATGCAAACGAATCTCTGGTCAGAAACTCTCCAAAGTTTGAAATAGATCGGAGAGA 888
||||||||| |||||| |||||||||||||||| |||||||||||||||||||| |||||
Sbjct 844 TCTTAATGCGAACGAACCTCTGGTCAGAAACTCACCAAAGTTTGAAATAGATCGTAGAGA 903
Query 889 TGAGGATACTCGAGTTGATATATGTTGCTCTCCAAAACCGGGATTGCTTCTATCGACTGT 948
||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| |||||
Sbjct 904 CGAGGATACTCGAGTTGATATATGCTGCTCGCCAAAACCGGGATTGCTACTATCTACTGT 963
Query 949 TAATACATTAGAGACTCTAGGCTTGGAGATTGAACAATGTGTTATAAGCTGCTTTAGTGA 1008
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 GAATACATTAGAGACTCTAGGCTTGGAGATTGAACAATGTGTTATAAGCTGCTTTAGTGA 1023
Query 1009 TTTCTCTTTGCAGGCTTCTTGTTCTGAGGGAGCTGAGCAGAGAGATTTCATAACATCGGA 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1024 TTTCTCTTTGCAGGCTTCTTGTTCTGAGGGAGCTGAGCAGAGAGATTTCATAACATCAGA 1083
Query 1069 GGATATAAAACAAGCATTATTCAGAAACGCAGGTTATGGTGGAAGTTGCTTGTAAAATGA 1128
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 1084 AGATATAAAACAAGCATTATTCAGAAACGCAGGTTATGGTGGAAGCTGCTTGTAA--TGA 1141
Query 1129 GTTATCATGATTGAAATTAATAAACCAAAATTATTGTTTATTT-TAAATAATACTAGCGC 1187
|| ||||||||||| ||||||||||||| |||||||||||| ||| ||||||||||||
Sbjct 1142 GT---CATGATTGAAACTAATAAACCAAAACTATTGTTTATTTCTAA-TAATACTAGCGC 1197
Query 1188 TTATAAACTTTAGATGTTGTGTTAATTCCCTTGTGAGTTTGAAttttttt-CTT-GGGGA 1245
|||||||||||||||||||| |||||||||||||||||||| ||||||| | | |||||
Sbjct 1198 TTATAAACTTTAGATGTTGTTTTAATTCCCTTGTGAGTTTGGTTTTTTTTTCCTAGGGGA 1257
Query 1246 AAACATTATGAGTTCAGTTGT 1266
|||||||||||||||||||||
Sbjct 1258 AAACATTATGAGTTCAGTTGT 1278
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62248675800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5